| --- |
| language: |
| - zh |
| - en |
| license: mit |
| pretty_name: PriorGen Data |
| tags: |
| - pathology |
| - whole-slide-image |
| - tcga |
| - cancer-classification |
| task_categories: |
| - image-classification |
| - text-generation |
| configs: |
| - config_name: default |
| data_files: |
| - split: train |
| path: feature_labels.csv |
| - config_name: modality_uni |
| data_files: |
| - split: train |
| path: viewer/feature_labels_modality_uni.csv |
| - config_name: modality_plip |
| data_files: |
| - split: train |
| path: viewer/feature_labels_modality_plip.csv |
| - config_name: organ_acc |
| data_files: |
| - split: train |
| path: viewer/feature_labels_organ_acc.csv |
| - config_name: organ_brca |
| data_files: |
| - split: train |
| path: viewer/feature_labels_organ_brca.csv |
| - config_name: organ_chol |
| data_files: |
| - split: train |
| path: viewer/feature_labels_organ_chol.csv |
| - config_name: organ_coad |
| data_files: |
| - split: train |
| path: viewer/feature_labels_organ_coad.csv |
| - config_name: organ_dlbc |
| data_files: |
| - split: train |
| path: viewer/feature_labels_organ_dlbc.csv |
| - config_name: organ_kich |
| data_files: |
| - split: train |
| path: viewer/feature_labels_organ_kich.csv |
| - config_name: organ_kirc |
| data_files: |
| - split: train |
| path: viewer/feature_labels_organ_kirc.csv |
| - config_name: organ_kirp |
| data_files: |
| - split: train |
| path: viewer/feature_labels_organ_kirp.csv |
| - config_name: organ_lihc |
| data_files: |
| - split: train |
| path: viewer/feature_labels_organ_lihc.csv |
| - config_name: organ_luad |
| data_files: |
| - split: train |
| path: viewer/feature_labels_organ_luad.csv |
| - config_name: organ_lusc |
| data_files: |
| - split: train |
| path: viewer/feature_labels_organ_lusc.csv |
| - config_name: organ_meso |
| data_files: |
| - split: train |
| path: viewer/feature_labels_organ_meso.csv |
| - config_name: organ_stad |
| data_files: |
| - split: train |
| path: viewer/feature_labels_organ_stad.csv |
| - config_name: organ_thca |
| data_files: |
| - split: train |
| path: viewer/feature_labels_organ_thca.csv |
| - config_name: tcga_cases |
| data_files: |
| - split: train |
| path: viewer/tcga_cases/train.csv |
| - split: validation |
| path: viewer/tcga_cases/validation.csv |
| - split: test |
| path: viewer/tcga_cases/test.csv |
| --- |
| |
| # PriorGen_Data |
| |
| PriorGen 使用的数据独立存放于此目录，代码项目位于 `/mnt/datadisk0/PriorGen`。数据按用途组织： |
| |
| ~~~text |
| PriorGen_Data/ |
| ├── features/uni/ # UNI WSI patch features (.pt) |
| ├── features/plip/ # PLIP WSI patch features (.pt) |
| ├── annotations/organs/ # TCGA organ report annotations and images |
| ├── splits/ # train/val/test CSV and label mappings |
| ├── knowledge_banks/ # organ knowledge banks (.pt/.json) |
| ├── anchors/ # PIB anchor features (.pt) |
| ├── feature_labels.csv # 每个 UNI/PLIP 特征文件与 TCGA 器官类别的对应关系 |
| ├── DATASET_CARD.md # 数据集说明与统计 |
| └── dataset_manifest.json |
| ~~~ |
| |
| `tcga_cases` 配置将合并划分表拆成 Viewer 可选择的 `train`、`validation`、`test` 三个 split；每行展示 slide ID、case ID、数字标签和器官类别。原始宽表也保存在 `source/splits_ALL_MERGED.csv`。 |
| |
| Viewer 配置选择器提供 `modality_uni`、`modality_plip` 两个模态子集，以及 `organ_acc` 至 `organ_thca` 的器官子集；`default` 配置包含完整清单。每个配置仍使用 `train` split。 |
| |
| `feature_labels.csv` 的每行对应一个特征文件，包含文件名、相对路径、模态（UNI/PLIP）、TCGA case ID、数字标签、器官类别和标签状态。器官标签编号对应：ACC、BRCA、CHOL、COAD、DLBC、KICH、KIRC、KIRP、LIHC、LUAD、LUSC、MESO、STAD、THCA。 |
| |
| 代码默认通过 `PRIORGEN_DATA_ROOT=/mnt/datadisk0/PriorGen_Data` 读取数据，也可以在 PriorGen/.env.example 中修改路径。 |
| |
