Datasets:
Claude Opus 5 (1M context)
[src,script] feat: ship QC figures in separate opt-in archives, keeping every published file under the 50 GB Hub limit
b040668 Download scripts/test_split_qc_figures.py from YongchengYAO/MedVision: direct link, hf CLI and curl.
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https://huggingface.co/datasets/YongchengYAO/MedVision/resolve/main/scripts/test_split_qc_figures.py
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hf download hf://datasets/YongchengYAO/MedVision/scripts/test_split_qc_figures.py
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curl -L -o test_split_qc_figures.py https://huggingface.co/datasets/YongchengYAO/MedVision/resolve/main/scripts/test_split_qc_figures.py
7.64 kB
| """Checks for scripts/split_qc_figures.py. | |
| The split is only safe if the archives it produces, taken together, extract to | |
| exactly the tree the original archive extracted to. Everything here is built in a | |
| temporary directory; no repository archive is touched. | |
| Run: | |
| python scripts/test_split_qc_figures.py | |
| """ | |
| import filecmp | |
| import os | |
| import shutil | |
| import sys | |
| import tempfile | |
| import zipfile | |
| sys.path.insert(0, os.path.dirname(os.path.abspath(__file__))) | |
| from split_qc_figures import is_figure_entry, plan_shards, split_one # noqa: E402 | |
| PASS = FAIL = 0 | |
| def check(cond, label, detail=""): | |
| global PASS, FAIL | |
| if cond: | |
| PASS += 1 | |
| print(f" ok {label}") | |
| else: | |
| FAIL += 1 | |
| print(f" FAIL {label} {detail}") | |
| def section(title): | |
| print(f"\n=== {title} ===") | |
| def build_archive(path, entries): | |
| with zipfile.ZipFile(path, "w", zipfile.ZIP_DEFLATED) as z: | |
| for name, data in entries: | |
| z.writestr(name, data) | |
| def extract(zip_paths, dest): | |
| os.makedirs(dest, exist_ok=True) | |
| for p in zip_paths: | |
| with zipfile.ZipFile(p) as z: | |
| z.extractall(dest) | |
| return dest | |
| def tree(root): | |
| out = {} | |
| for dirpath, _, files in os.walk(root): | |
| for f in files: | |
| full = os.path.join(dirpath, f) | |
| out[os.path.relpath(full, root)] = os.path.getsize(full) | |
| return out | |
| # ---------------------------------------------------------------- 1. classifier | |
| section("1. the figure classifier matches directories, not lookalike names") | |
| for name in [ | |
| "X/Landmarks-fig/a.png", | |
| "X/Landmarks-Label1-fig-v1.4.0/a.png", | |
| "X/Landmarks-fig-w-projection/b.png", | |
| "X/X-subset/Landmarks-Label2-fig-v1.4.0/s.png", # deep nesting: BraTS24 / MSD | |
| "X/Landmarks-PSMA-Label1-fig-v1.2.0/c.png", | |
| ]: | |
| check(is_figure_entry(name), f"figure: {name}") | |
| for name in [ | |
| "X/Landmarks-Label1-v1.4.0/plan.json.gz", | |
| "X/config-notes.txt", # holds 'fig', lacks '-fig' | |
| "X/benchmark_plan_biometry_v1.4.0.json.gz", | |
| "X/figures.txt", # 'fig' at the start of a component, still not '-fig' | |
| "X/X-subset/Landmarks-Label2-v1.4.0/plan.json.gz", | |
| ]: | |
| check(not is_figure_entry(name), f"kept: {name}") | |
| # ------------------------------------------------------------------- 2. packing | |
| section("2. shard packing respects the byte ceiling") | |
| class FakeInfo: | |
| def __init__(self, size): | |
| self.compress_size = size | |
| shards = plan_shards([FakeInfo(30) for _ in range(10)], shard_bytes=100) | |
| check(all(sum(i.compress_size for i in s) <= 100 for s in shards), "no shard exceeds the ceiling") | |
| check(sum(len(s) for s in shards) == 10, "every entry is placed exactly once") | |
| oversized = plan_shards([FakeInfo(500)], shard_bytes=100) | |
| check(len(oversized) == 1 and len(oversized[0]) == 1, "an entry larger than the ceiling still ships") | |
| check(len(plan_shards([FakeInfo(10)], shard_bytes=100)) == 1, "a small set stays in one shard") | |
| # ------------------------------------- 3. round-trip: split then extract == original | |
| section("3. split archives re-extract to the original tree") | |
| tmp = tempfile.mkdtemp(prefix="qcfig-test-") | |
| try: | |
| entries = [ | |
| ("SYNTH/", b""), | |
| ("SYNTH/SYNTH-subset/", b""), | |
| ("SYNTH/SYNTH-subset/Landmarks-Label1-v1.4.0/plan.json.gz", b"KEEP" * 100), | |
| ("SYNTH/config-notes.txt", b"the substring fig appears here"), | |
| ("SYNTH/Landmarks-fig/a.png", os.urandom(50_000)), | |
| ("SYNTH/Landmarks-fig-w-projection/b.png", os.urandom(50_000)), | |
| ] + [ | |
| (f"SYNTH/SYNTH-subset/Landmarks-Label2-fig-v1.4.0/s{i}.png", os.urandom(40_000)) | |
| for i in range(20) | |
| ] | |
| src = os.path.join(tmp, "SYNTH.zip") | |
| build_archive(src, entries) | |
| reference = extract([src], os.path.join(tmp, "reference")) | |
| ref_tree = tree(reference) | |
| # A 100 KB ceiling against ~1 MB of figures forces real sharding. | |
| report = split_one(src, shard_bytes=100_000, dry_run=False) | |
| print(f" [{report.strip()}]") | |
| produced = sorted(f for f in os.listdir(tmp) if f.endswith(".zip")) | |
| shard_files = [f for f in produced if "_fig" in f] | |
| check(len(shard_files) > 1, "sharding actually happened", f"got {shard_files}") | |
| check( | |
| all(f.startswith("SYNTH_fig.part") for f in shard_files), | |
| "multi-shard sets use the partNN name", | |
| f"got {shard_files}", | |
| ) | |
| check( | |
| all(os.path.getsize(os.path.join(tmp, f)) <= 150_000 for f in shard_files), | |
| "each shard stays near the ceiling", | |
| ) | |
| # The dataset archive alone must carry no figures... | |
| with zipfile.ZipFile(src) as z: | |
| names = z.namelist() | |
| check(not any(is_figure_entry(n) for n in names), "dataset archive holds no figures") | |
| check( | |
| any(n.endswith("plan.json.gz") for n in names) and "SYNTH/config-notes.txt" in names, | |
| "dataset archive keeps the annotations", | |
| ) | |
| # ...and every shard must carry nothing but figures. | |
| for f in shard_files: | |
| with zipfile.ZipFile(os.path.join(tmp, f)) as z: | |
| check( | |
| all(is_figure_entry(n) for n in z.namelist()), | |
| f"{f} holds only figures", | |
| ) | |
| # The restore path MedVision.py uses: extractall the dataset archive, then | |
| # extractall every shard, into the same root. | |
| restored = extract( | |
| [src] + [os.path.join(tmp, f) for f in shard_files], | |
| os.path.join(tmp, "restored"), | |
| ) | |
| check(tree(restored) == ref_tree, "restored tree matches the original exactly") | |
| match, mismatch, errors = filecmp.cmpfiles( | |
| reference, restored, list(ref_tree), shallow=False | |
| ) | |
| check(not mismatch and not errors, "every file is byte-identical", f"{mismatch} {errors}") | |
| # Dataset-archive-only extraction is what a default user gets. | |
| default_only = extract([src], os.path.join(tmp, "default")) | |
| check( | |
| all(not is_figure_entry(p.replace(os.sep, "/")) for p in tree(default_only)), | |
| "a default download contains no figures", | |
| ) | |
| # ------------------------------------------------------- 4. idempotent re-run | |
| section("4. re-running is a no-op") | |
| again = split_one(src, shard_bytes=100_000, dry_run=False) | |
| check("no figures, untouched" in again, "second run leaves the archive alone", again) | |
| # -------------------------------------------- 5. an archive without figures | |
| section("5. an archive with no figures is never rewritten") | |
| plain = os.path.join(tmp, "PLAIN.zip") | |
| build_archive(plain, [("PLAIN/Landmarks-Label1-v1.4.0/plan.json.gz", b"x" * 10)]) | |
| before = os.path.getsize(plain) | |
| msg = split_one(plain, shard_bytes=100_000, dry_run=False) | |
| check("no figures, untouched" in msg, "reported untouched", msg) | |
| check(os.path.getsize(plain) == before, "byte size unchanged") | |
| check(not os.path.exists(os.path.join(tmp, "PLAIN_fig.zip")), "no empty figure archive created") | |
| # ------------------------------------------- 6. single shard keeps plain name | |
| section("6. a figure set under the ceiling uses <name>_fig.zip") | |
| small = os.path.join(tmp, "SMALL.zip") | |
| build_archive( | |
| small, | |
| [ | |
| ("SMALL/Landmarks-Label1-v1.4.0/plan.json.gz", b"k" * 100), | |
| ("SMALL/Landmarks-Label1-fig-v1.4.0/one.png", os.urandom(1000)), | |
| ], | |
| ) | |
| split_one(small, shard_bytes=40_000_000_000, dry_run=False) | |
| check(os.path.exists(os.path.join(tmp, "SMALL_fig.zip")), "named SMALL_fig.zip") | |
| check(not os.path.exists(os.path.join(tmp, "SMALL_fig.part01.zip")), "no partNN suffix") | |
| finally: | |
| shutil.rmtree(tmp, ignore_errors=True) | |
| print(f"\n{PASS} passed, {FAIL} failed") | |
| sys.exit(1 if FAIL else 0) | |