MedVision / scripts /test_split_qc_figures.py
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Claude Opus 5 (1M context)
[src,script] feat: ship QC figures in separate opt-in archives, keeping every published file under the 50 GB Hub limit
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"""Checks for scripts/split_qc_figures.py.
The split is only safe if the archives it produces, taken together, extract to
exactly the tree the original archive extracted to. Everything here is built in a
temporary directory; no repository archive is touched.
Run:
python scripts/test_split_qc_figures.py
"""
import filecmp
import os
import shutil
import sys
import tempfile
import zipfile
sys.path.insert(0, os.path.dirname(os.path.abspath(__file__)))
from split_qc_figures import is_figure_entry, plan_shards, split_one # noqa: E402
PASS = FAIL = 0
def check(cond, label, detail=""):
global PASS, FAIL
if cond:
PASS += 1
print(f" ok {label}")
else:
FAIL += 1
print(f" FAIL {label} {detail}")
def section(title):
print(f"\n=== {title} ===")
def build_archive(path, entries):
with zipfile.ZipFile(path, "w", zipfile.ZIP_DEFLATED) as z:
for name, data in entries:
z.writestr(name, data)
def extract(zip_paths, dest):
os.makedirs(dest, exist_ok=True)
for p in zip_paths:
with zipfile.ZipFile(p) as z:
z.extractall(dest)
return dest
def tree(root):
out = {}
for dirpath, _, files in os.walk(root):
for f in files:
full = os.path.join(dirpath, f)
out[os.path.relpath(full, root)] = os.path.getsize(full)
return out
# ---------------------------------------------------------------- 1. classifier
section("1. the figure classifier matches directories, not lookalike names")
for name in [
"X/Landmarks-fig/a.png",
"X/Landmarks-Label1-fig-v1.4.0/a.png",
"X/Landmarks-fig-w-projection/b.png",
"X/X-subset/Landmarks-Label2-fig-v1.4.0/s.png", # deep nesting: BraTS24 / MSD
"X/Landmarks-PSMA-Label1-fig-v1.2.0/c.png",
]:
check(is_figure_entry(name), f"figure: {name}")
for name in [
"X/Landmarks-Label1-v1.4.0/plan.json.gz",
"X/config-notes.txt", # holds 'fig', lacks '-fig'
"X/benchmark_plan_biometry_v1.4.0.json.gz",
"X/figures.txt", # 'fig' at the start of a component, still not '-fig'
"X/X-subset/Landmarks-Label2-v1.4.0/plan.json.gz",
]:
check(not is_figure_entry(name), f"kept: {name}")
# ------------------------------------------------------------------- 2. packing
section("2. shard packing respects the byte ceiling")
class FakeInfo:
def __init__(self, size):
self.compress_size = size
shards = plan_shards([FakeInfo(30) for _ in range(10)], shard_bytes=100)
check(all(sum(i.compress_size for i in s) <= 100 for s in shards), "no shard exceeds the ceiling")
check(sum(len(s) for s in shards) == 10, "every entry is placed exactly once")
oversized = plan_shards([FakeInfo(500)], shard_bytes=100)
check(len(oversized) == 1 and len(oversized[0]) == 1, "an entry larger than the ceiling still ships")
check(len(plan_shards([FakeInfo(10)], shard_bytes=100)) == 1, "a small set stays in one shard")
# ------------------------------------- 3. round-trip: split then extract == original
section("3. split archives re-extract to the original tree")
tmp = tempfile.mkdtemp(prefix="qcfig-test-")
try:
entries = [
("SYNTH/", b""),
("SYNTH/SYNTH-subset/", b""),
("SYNTH/SYNTH-subset/Landmarks-Label1-v1.4.0/plan.json.gz", b"KEEP" * 100),
("SYNTH/config-notes.txt", b"the substring fig appears here"),
("SYNTH/Landmarks-fig/a.png", os.urandom(50_000)),
("SYNTH/Landmarks-fig-w-projection/b.png", os.urandom(50_000)),
] + [
(f"SYNTH/SYNTH-subset/Landmarks-Label2-fig-v1.4.0/s{i}.png", os.urandom(40_000))
for i in range(20)
]
src = os.path.join(tmp, "SYNTH.zip")
build_archive(src, entries)
reference = extract([src], os.path.join(tmp, "reference"))
ref_tree = tree(reference)
# A 100 KB ceiling against ~1 MB of figures forces real sharding.
report = split_one(src, shard_bytes=100_000, dry_run=False)
print(f" [{report.strip()}]")
produced = sorted(f for f in os.listdir(tmp) if f.endswith(".zip"))
shard_files = [f for f in produced if "_fig" in f]
check(len(shard_files) > 1, "sharding actually happened", f"got {shard_files}")
check(
all(f.startswith("SYNTH_fig.part") for f in shard_files),
"multi-shard sets use the partNN name",
f"got {shard_files}",
)
check(
all(os.path.getsize(os.path.join(tmp, f)) <= 150_000 for f in shard_files),
"each shard stays near the ceiling",
)
# The dataset archive alone must carry no figures...
with zipfile.ZipFile(src) as z:
names = z.namelist()
check(not any(is_figure_entry(n) for n in names), "dataset archive holds no figures")
check(
any(n.endswith("plan.json.gz") for n in names) and "SYNTH/config-notes.txt" in names,
"dataset archive keeps the annotations",
)
# ...and every shard must carry nothing but figures.
for f in shard_files:
with zipfile.ZipFile(os.path.join(tmp, f)) as z:
check(
all(is_figure_entry(n) for n in z.namelist()),
f"{f} holds only figures",
)
# The restore path MedVision.py uses: extractall the dataset archive, then
# extractall every shard, into the same root.
restored = extract(
[src] + [os.path.join(tmp, f) for f in shard_files],
os.path.join(tmp, "restored"),
)
check(tree(restored) == ref_tree, "restored tree matches the original exactly")
match, mismatch, errors = filecmp.cmpfiles(
reference, restored, list(ref_tree), shallow=False
)
check(not mismatch and not errors, "every file is byte-identical", f"{mismatch} {errors}")
# Dataset-archive-only extraction is what a default user gets.
default_only = extract([src], os.path.join(tmp, "default"))
check(
all(not is_figure_entry(p.replace(os.sep, "/")) for p in tree(default_only)),
"a default download contains no figures",
)
# ------------------------------------------------------- 4. idempotent re-run
section("4. re-running is a no-op")
again = split_one(src, shard_bytes=100_000, dry_run=False)
check("no figures, untouched" in again, "second run leaves the archive alone", again)
# -------------------------------------------- 5. an archive without figures
section("5. an archive with no figures is never rewritten")
plain = os.path.join(tmp, "PLAIN.zip")
build_archive(plain, [("PLAIN/Landmarks-Label1-v1.4.0/plan.json.gz", b"x" * 10)])
before = os.path.getsize(plain)
msg = split_one(plain, shard_bytes=100_000, dry_run=False)
check("no figures, untouched" in msg, "reported untouched", msg)
check(os.path.getsize(plain) == before, "byte size unchanged")
check(not os.path.exists(os.path.join(tmp, "PLAIN_fig.zip")), "no empty figure archive created")
# ------------------------------------------- 6. single shard keeps plain name
section("6. a figure set under the ceiling uses <name>_fig.zip")
small = os.path.join(tmp, "SMALL.zip")
build_archive(
small,
[
("SMALL/Landmarks-Label1-v1.4.0/plan.json.gz", b"k" * 100),
("SMALL/Landmarks-Label1-fig-v1.4.0/one.png", os.urandom(1000)),
],
)
split_one(small, shard_bytes=40_000_000_000, dry_run=False)
check(os.path.exists(os.path.join(tmp, "SMALL_fig.zip")), "named SMALL_fig.zip")
check(not os.path.exists(os.path.join(tmp, "SMALL_fig.part01.zip")), "no partNN suffix")
finally:
shutil.rmtree(tmp, ignore_errors=True)
print(f"\n{PASS} passed, {FAIL} failed")
sys.exit(1 if FAIL else 0)