| --- |
| license: cc-by-nc-sa-4.0 |
| tags: |
| - genomics |
| - dna |
| - benchmark |
| pretty_name: GLMap Probe Panels |
| --- |
| |
| # GLMap Probe Panels |
|
|
| Prebuilt DNA probe panels for [GLMap](https://github.com/ai4nucleome/GLMap) |
| — a training-free framework for profiling genomic language models by their |
| likelihood responses over a fixed panel of DNA sequences. |
|
|
| ## Files |
|
|
| | File | Description | |
| |---|---| |
| | `main_panel.parquet` | 10,000-probe biological panel (14 functional elements × 4 categories) | |
| | `panel_manifest.json` | Per-element / per-dataset counts and sampling seeds | |
| | `panel_summary.md` | Human-readable panel composition summary | |
|
|
| ## Usage |
|
|
| ```python |
| import glmap |
| panel = glmap.load_panel() # auto-downloads from this dataset if not local |
| ``` |
|
|
| Or directly: |
|
|
| ```python |
| import pandas as pd |
| from huggingface_hub import hf_hub_download |
| path = hf_hub_download("Tim419/GLMap-panels", "main_panel.parquet", repo_type="dataset") |
| panel = pd.read_parquet(path) |
| ``` |
|
|
| ## License |
|
|
| **CC-BY-NC-SA-4.0.** The panel was assembled from three upstream benchmarks: |
|
|
| - GUE (DNABERT-2) — Apache-2.0 |
| - Plant Genomic Benchmark (ArgoNT) — CC-BY-NC-SA-4.0 |
| - DNA Foundation Benchmark (DFB) — Apache-2.0 |
|
|
| Because the panel contains 1,600 probes drawn from PGB, the combined |
| artefact inherits PGB's CC-BY-NC-SA-4.0 license (ShareAlike). For |
| non-commercial research use with attribution. Please cite all three |
| upstream benchmarks plus the GLMap paper. |
|
|
