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============================= test session starts ==============================
platform linux -- Python 3.12.13, pytest-8.4.1, pluggy-1.6.0 -- /usr/local/bin/python3
rootdir: /app
configfile: ../dev/null
plugins: json-ctrf-0.3.5
collecting ... collected 8 items
../app::test_inputs_match_hashes_and_source_provenance PASSED [ 12%]
../app::test_parameters_reconstruct_all_four_traces_and_reference_solution FAILED [ 25%]
../app::test_com_occupations_thermal_tails_and_trace_rmse_are_derived FAILED [ 37%]
../app::test_conditional_covariance_and_optimizer_evidence_are_consistent FAILED [ 50%]
../app::test_model_adequacy_and_profile_likelihood_are_independently_reproducible FAILED [ 62%]
../app::test_wild_bootstrap_ensemble_percentiles_bias_and_csv FAILED [ 75%]
../app::test_delete_one_delay_jackknife_and_bca_interval FAILED [ 87%]
../app::test_scientific_condition_flags_are_explicit FAILED [100%]
=================================== FAILURES ===================================
______ test_parameters_reconstruct_all_four_traces_and_reference_solution ______
def test_parameters_reconstruct_all_four_traces_and_reference_solution() -> None:
> output = load_output()
^^^^^^^^^^^^^
test_outputs.py:834:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
test_outputs.py:787: in load_output
output = json.loads((ROOT / "joint_fit.json").read_text())
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/local/lib/python3.12/pathlib.py:1027: in read_text
with self.open(mode='r', encoding=encoding, errors=errors) as f:
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = PosixPath('/root/joint_fit.json'), mode = 'r', buffering = -1
encoding = 'locale', errors = None, newline = None
def open(self, mode='r', buffering=-1, encoding=None,
errors=None, newline=None):
"""
Open the file pointed to by this path and return a file object, as
the built-in open() function does.
"""
if "b" not in mode:
encoding = io.text_encoding(encoding)
> return io.open(self, mode, buffering, encoding, errors, newline)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
E FileNotFoundError: [Errno 2] No such file or directory: '/root/joint_fit.json'
/usr/local/lib/python3.12/pathlib.py:1013: FileNotFoundError
________ test_com_occupations_thermal_tails_and_trace_rmse_are_derived _________
def test_com_occupations_thermal_tails_and_trace_rmse_are_derived() -> None:
> output = load_output()
^^^^^^^^^^^^^
test_outputs.py:866:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
test_outputs.py:787: in load_output
output = json.loads((ROOT / "joint_fit.json").read_text())
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/local/lib/python3.12/pathlib.py:1027: in read_text
with self.open(mode='r', encoding=encoding, errors=errors) as f:
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = PosixPath('/root/joint_fit.json'), mode = 'r', buffering = -1
encoding = 'locale', errors = None, newline = None
def open(self, mode='r', buffering=-1, encoding=None,
errors=None, newline=None):
"""
Open the file pointed to by this path and return a file object, as
the built-in open() function does.
"""
if "b" not in mode:
encoding = io.text_encoding(encoding)
> return io.open(self, mode, buffering, encoding, errors, newline)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
E FileNotFoundError: [Errno 2] No such file or directory: '/root/joint_fit.json'
/usr/local/lib/python3.12/pathlib.py:1013: FileNotFoundError
______ test_conditional_covariance_and_optimizer_evidence_are_consistent _______
def test_conditional_covariance_and_optimizer_evidence_are_consistent() -> None:
> output = load_output()
^^^^^^^^^^^^^
test_outputs.py:915:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
test_outputs.py:787: in load_output
output = json.loads((ROOT / "joint_fit.json").read_text())
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/local/lib/python3.12/pathlib.py:1027: in read_text
with self.open(mode='r', encoding=encoding, errors=errors) as f:
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = PosixPath('/root/joint_fit.json'), mode = 'r', buffering = -1
encoding = 'locale', errors = None, newline = None
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