workshop: single Show2D for 3 CoM panels
Browse files
notebooks/berk_workshop_v1.ipynb
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@@ -312,7 +312,7 @@
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"com_row = (data_f * qx).sum(dim=(-2, -1)) / total_per_dp\n",
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"com_col = (data_f * qy).sum(dim=(-2, -1)) / total_per_dp\n",
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"\n",
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"# Detrend so
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"com_row -= com_row.mean()\n",
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"com_col -= com_col.mean()\n",
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"\n",
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@@ -323,43 +323,11 @@
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"print(f\"|CoM| max {com_mag.max().item():.4f} px\")\n",
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"\n",
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"quantem.widget.Show2D(\n",
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" com_row.cpu().numpy(),\n",
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"
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" sampling=meta[\"sampling\"][:2],\n",
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" units=meta[\"units\"][:2],\n",
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" cmap=\"RdBu_r\",\n",
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")"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "5d80052b",
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"metadata": {},
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"outputs": [],
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"source": [
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"quantem.widget.Show2D(\n",
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" com_col.cpu().numpy(),\n",
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" title=\"CoM col (qy) — DPC\",\n",
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" sampling=meta[\"sampling\"][:2],\n",
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" units=meta[\"units\"][:2],\n",
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" cmap=\"RdBu_r\",\n",
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")"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "24a5fdee",
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"metadata": {},
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"outputs": [],
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"source": [
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"quantem.widget.Show2D(\n",
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" com_mag.cpu().numpy(),\n",
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" title=\"|CoM| (total deflection)\",\n",
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" sampling=meta[\"sampling\"][:2],\n",
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" units=meta[\"units\"][:2],\n",
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" cmap=\"magma\",\n",
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")"
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]
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},
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@@ -371,13 +339,12 @@
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"## What you just did\n",
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"\n",
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"1. Loaded real 4D-STEM gold from Hugging Face → torch tensor on the Colab T4.\n",
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"2. Browsed it with `Show4DSTEM`
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"3. Bright field via aperture mask × per-scan sum
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"4. Dark field via the complementary mask.\n",
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"5. DPC / CoM
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"\n",
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"Every reduction
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"interactive WebGPU widget (zoom, contrast, scale bar).\n",
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"\n",
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"## Try next\n",
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"\n",
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"com_row = (data_f * qx).sum(dim=(-2, -1)) / total_per_dp\n",
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"com_col = (data_f * qy).sum(dim=(-2, -1)) / total_per_dp\n",
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"\n",
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"# Detrend so RdBu_r is zero-centered on the signed deflection.\n",
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"com_row -= com_row.mean()\n",
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"com_col -= com_col.mean()\n",
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"\n",
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"print(f\"|CoM| max {com_mag.max().item():.4f} px\")\n",
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"\n",
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"quantem.widget.Show2D(\n",
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" [com_row.cpu().numpy(), com_col.cpu().numpy(), com_mag.cpu().numpy()],\n",
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" labels=[\"CoM row (qx)\", \"CoM col (qy)\", \"|CoM| total\"],\n",
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" sampling=meta[\"sampling\"][:2],\n",
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" units=meta[\"units\"][:2],\n",
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" cmap=[\"RdBu_r\", \"RdBu_r\", \"magma\"],\n",
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")"
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]
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},
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"## What you just did\n",
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"\n",
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"1. Loaded real 4D-STEM gold from Hugging Face → torch tensor on the Colab T4.\n",
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"2. Browsed it with `Show4DSTEM`; hardcoded the aperture at the detector center.\n",
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"3. Bright field via aperture mask × per-scan sum (`Show2D`).\n",
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"4. Dark field via the complementary mask (`Show2D`).\n",
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"5. DPC / CoM: a single `Show2D` with three panels — CoM row, CoM col, and `|CoM|` magnitude.\n",
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"\n",
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"Every reduction on the GPU in milliseconds; every viz is an interactive WebGPU widget.\n",
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"\n",
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"## Try next\n",
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"\n",
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