Add paper/code links, license, and enhance task category

#2
by nielsr HF Staff - opened
Files changed (1) hide show
  1. README.md +56 -52
README.md CHANGED
@@ -1,68 +1,70 @@
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  ---
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  annotations_creators:
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- - expert-generated
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  language:
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- - en
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  multilinguality:
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- - monolingual
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- - translation
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  size_categories:
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- - 10K<n<100K
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  source_datasets:
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- - original
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  task_categories:
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- - text-classification
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- - zero-shot-classification
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- - feature-extraction
 
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  task_ids:
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- - natural-language-inference
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- - semantic-similarity-scoring
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  pretty_name: EMED (e-MedSolution to OMOP CDM Schema Matching dataset)
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  tags:
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- - schema-matching
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- - data-integration
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- - healthcare
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- - omop-cdm
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- - e-medsolution
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- - medical-informatics
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- - tabular-schema
 
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  configs:
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- - config_name: default
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- default: true
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- data_files:
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- - split: train
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- path: data/train.csv
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- - split: validation
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- path: data/validation.csv
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- - split: test
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- path: data/test.csv
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  dataset_info:
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  features:
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- - name: omop
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- dtype: string
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- - name: table
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- dtype: string
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- - name: des1
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- dtype: string
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- - name: des2
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- dtype: string
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- - name: label
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- dtype: int64
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- - name: d1
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- dtype: string
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- - name: d2
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- dtype: string
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- - name: d3
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- dtype: string
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- - name: d4
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- dtype: string
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  splits:
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- - name: train
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- num_examples: 64957
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- - name: validation
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- num_examples: 8126
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- - name: test
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- num_examples: 8121
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  ---
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  # EMED: Healthcare Schema Matching Dataset
@@ -73,6 +75,8 @@ dataset_info:
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  Schema matching in healthcare requires aligning complex, domain-specific clinical tables and attributes across heterogeneous standards. EMED provides **81,204** candidate attribute pairs across **55** e-MedSolution source tables (**804** attributes) and **7** OMOP CDM target tables (**101** attributes), with **239** verified positive matches.
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  ## Dataset Creation Pipeline
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  The **EMED** dataset was created and annotated with the following three-stage pipeline:
@@ -174,4 +178,4 @@ If you use the **EMED** dataset in your research, please cite the following work
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  journal={E{\"o}tv{\"o}s Lor{\'a}nd University, Tech. Rep.},
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  year={2020}
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  }
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- ```
 
1
  ---
2
  annotations_creators:
3
+ - expert-generated
4
  language:
5
+ - en
6
  multilinguality:
7
+ - monolingual
8
+ - translation
9
  size_categories:
10
+ - 10K<n<100K
11
  source_datasets:
12
+ - original
13
  task_categories:
14
+ - text-classification
15
+ - zero-shot-classification
16
+ - feature-extraction
17
+ - other
18
  task_ids:
19
+ - natural-language-inference
20
+ - semantic-similarity-scoring
21
  pretty_name: EMED (e-MedSolution to OMOP CDM Schema Matching dataset)
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  tags:
23
+ - schema-matching
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+ - data-integration
25
+ - healthcare
26
+ - omop-cdm
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+ - e-medsolution
28
+ - medical-informatics
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+ - tabular-schema
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+ license: other
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  configs:
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+ - config_name: default
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+ default: true
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+ data_files:
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+ - split: train
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+ path: data/train.csv
37
+ - split: validation
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+ path: data/validation.csv
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+ - split: test
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+ path: data/test.csv
41
  dataset_info:
42
  features:
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+ - name: omop
44
+ dtype: string
45
+ - name: table
46
+ dtype: string
47
+ - name: des1
48
+ dtype: string
49
+ - name: des2
50
+ dtype: string
51
+ - name: label
52
+ dtype: int64
53
+ - name: d1
54
+ dtype: string
55
+ - name: d2
56
+ dtype: string
57
+ - name: d3
58
+ dtype: string
59
+ - name: d4
60
+ dtype: string
61
  splits:
62
+ - name: train
63
+ num_examples: 64957
64
+ - name: validation
65
+ num_examples: 8126
66
+ - name: test
67
+ num_examples: 8121
68
  ---
69
 
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  # EMED: Healthcare Schema Matching Dataset
 
75
 
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  Schema matching in healthcare requires aligning complex, domain-specific clinical tables and attributes across heterogeneous standards. EMED provides **81,204** candidate attribute pairs across **55** e-MedSolution source tables (**804** attributes) and **7** OMOP CDM target tables (**101** attributes), with **239** verified positive matches.
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+ This dataset is described in the paper [Knowledge Graph-based Retrieval-Augmented Generation for Schema Matching](https://huggingface.co/papers/2501.08686). The accompanying code is available at [https://github.com/machuangtao/kg-rag4sm](https://github.com/machuangtao/kg-rag4sm).
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+
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  ## Dataset Creation Pipeline
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  The **EMED** dataset was created and annotated with the following three-stage pipeline:
 
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  journal={E{\"o}tv{\"o}s Lor{\'a}nd University, Tech. Rep.},
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  year={2020}
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  }
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+ ```