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Datasets:
fallingstar10
/
Depmap25Q3

Tasks:
Tabular Classification
Modalities:
Text
Tags:
cancer
depmap
crispr
rnaseq
copy-number
mutations
License:
Dataset card Data Studio Files
xet
 Community

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DepMap Public 25Q3 Raw Files

This dataset repository mirrors the raw DepMap public release files that were uploaded from the local depmap_data workspace directory.

What is included

  • 115 raw DepMap release files from the main depmap_data mirror
  • Plus metmap125.xlsx, the original MetMap 125 Excel workbook that the generated metmap125_metastatic_potential_matrix.csv is derived from
  • Total size: ~46.9 GiB across 118 repository entries (116 data files + this card + .gitattributes)
  • Flat top-level layout matching the local source folder
  • Large binary and tabular assets tracked by Hugging Face storage
  • The original upstream release note file as README.txt

Major file families in this upload include:

  • CRISPR dependency and gene effect matrices
  • RNA expression gene- and transcript-level matrices
  • Copy-number, mutation, and fusion outputs
  • RPPA, metabolomics, and proteomics files
  • Drug screening and subtype-related tables
  • Model and mapping metadata files

Source

The content originates from the Broad Institute DepMap public release labeled 25Q3 in the local workflow used for this workspace.

This repository is intended as a hosting mirror for raw release artifacts. For upstream methodology and file-level context, see:

  • README.txt in this repository
  • the DepMap Portal and Broad Institute release documentation

Companion tooling

The raw files are fetched and managed with DepLorado, a Rust downloader for DepMap:

Structure

All uploaded data files are placed at the repository root to preserve the original filenames and keep automated downstream access simple.

License and attribution

The mirrored data is redistributed under CC BY 4.0, the license applied by the Broad Institute to DepMap public releases. The license front matter above refers to the dataset content, not to any tooling.

Known issues

  • CTRPv2.0_2015_ctd2_ExpandedDataset.zip was previously truncated (missing the ZIP central directory). It has been replaced with the complete archive (342,737,645 bytes, md5=e764f6074a624d515d1b9d75e8b306e7, 16 members).
  • metmap125.xlsx is an Excel workbook (not a DepMap raw release file); it is included only as the source for metmap125_metastatic_potential_matrix.csv.

Notes

  • This mirror does not reinterpret, clean, or remodel the uploaded files.
  • Local resumable-upload metadata under .cache/huggingface/ was not included as dataset content.
  • Please verify any reuse, redistribution, or citation requirements against the original DepMap/Broad Institute terms and documentation.
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