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src
large_stringlengths
7
181
⌀
dst
large_stringlengths
7
694
⌀
type
large_stringclasses
16 values
source
large_stringclasses
8 values
evidence
large_stringlengths
0
218
⌀
specificity
large_stringclasses
3 values
family_gene_count
int32
0
591
⌀
rna_family:RF02073
motif_type:1x1
contains_motif
rfam
consensus SS x1
0
rna_family:RF02073
motif_type:1x2
contains_motif
rfam
consensus SS x1
0
rna_family:RF02073
motif_type:2x3
contains_motif
rfam
consensus SS x1
0
rna_family:RF02073
motif_type:hairpin5
contains_motif
rfam
consensus SS x1
0
rna_family:RF02073
motif_type:hairpin7
contains_motif
rfam
consensus SS x1
0
rna_family:RF02054
motif_type:hairpin5
contains_motif
rfam
consensus SS x1
0
rna_family:RF02529
motif_type:1x1
contains_motif
rfam
consensus SS x2
0
rna_family:RF02529
motif_type:hairpin4
contains_motif
rfam
consensus SS x2
0
rna_family:RF02529
motif_type:1x2
contains_motif
rfam
consensus SS x1
0
rna_family:RF02529
motif_type:2x3
contains_motif
rfam
consensus SS x1
0
rna_family:RF02529
motif_type:3x4
contains_motif
rfam
consensus SS x1
0
rna_family:RF02529
motif_type:bulge2
contains_motif
rfam
consensus SS x1
0
rna_family:RF00962
motif_type:bulge2
contains_motif
rfam
consensus SS x2
0
rna_family:RF00962
motif_type:1x1
contains_motif
rfam
consensus SS x1
0
rna_family:RF00962
motif_type:hairpin7
contains_motif
rfam
consensus SS x1
0
rna_family:RF00961
motif_type:1x1
contains_motif
rfam
consensus SS x3
0
rna_family:RF00961
motif_type:1x2
contains_motif
rfam
consensus SS x1
0
rna_family:RF00961
motif_type:bulge1
contains_motif
rfam
consensus SS x1
0
rna_family:RF00966
motif_type:1x1
contains_motif
rfam
consensus SS x1
0
rna_family:RF00966
motif_type:1x2
contains_motif
rfam
consensus SS x1
0
rna_family:RF00966
motif_type:2x2
contains_motif
rfam
consensus SS x1
0
rna_family:RF00966
motif_type:3x3
contains_motif
rfam
consensus SS x1
0
rna_family:RF00963
motif_type:1x1
contains_motif
rfam
consensus SS x1
0
rna_family:RF00968
motif_type:1x2
contains_motif
rfam
consensus SS x2
0
rna_family:RF00968
motif_type:1x1
contains_motif
rfam
consensus SS x1
0
rna_family:RF00968
motif_type:bulge2
contains_motif
rfam
consensus SS x1
0
rna_family:RF00968
motif_type:bulge3
contains_motif
rfam
consensus SS x1
0
rna_family:RF00968
motif_type:hairpin6
contains_motif
rfam
consensus SS x1
0
rna_family:RF00969
motif_type:1x1
contains_motif
rfam
consensus SS x2
0
rna_family:RF00971
motif_type:1x1
contains_motif
rfam
consensus SS x1
0
rna_family:RF00971
motif_type:2x2
contains_motif
rfam
consensus SS x1
0
rna_family:RF00971
motif_type:bulge3
contains_motif
rfam
consensus SS x1
0
rna_family:RF00971
motif_type:hairpin3
contains_motif
rfam
consensus SS x1
0
rna_family:RF00970
motif_type:bulge4
contains_motif
rfam
consensus SS x2
0
rna_family:RF00970
motif_type:1x1
contains_motif
rfam
consensus SS x1
0
rna_family:RF00970
motif_type:1x2
contains_motif
rfam
consensus SS x1
0
rna_family:RF00970
motif_type:2x2
contains_motif
rfam
consensus SS x1
0
rna_family:RF00970
motif_type:bulge1
contains_motif
rfam
consensus SS x1
0
rna_family:RF00970
motif_type:hairpin6
contains_motif
rfam
consensus SS x1
0
rna_family:RF00974
motif_type:1x1
contains_motif
rfam
consensus SS x1
0
rna_family:RF00974
motif_type:hairpin5
contains_motif
rfam
consensus SS x1
0
rna_family:RF00976
motif_type:1x1
contains_motif
rfam
consensus SS x1
0
rna_family:RF00976
motif_type:bulge1
contains_motif
rfam
consensus SS x1
0
rna_family:RF00976
motif_type:hairpin3
contains_motif
rfam
consensus SS x1
0
rna_family:RF02551
motif_type:hairpin4
contains_motif
rfam
consensus SS x1
0
rna_family:RF00979
motif_type:1x1
contains_motif
rfam
consensus SS x2
0
rna_family:RF00979
motif_type:hairpin6
contains_motif
rfam
consensus SS x1
0
rna_family:RF00977
motif_type:1x1
contains_motif
rfam
consensus SS x2
0
rna_family:RF00977
motif_type:1x3
contains_motif
rfam
consensus SS x2
0
rna_family:RF00983
motif_type:bulge1
contains_motif
rfam
consensus SS x3
0
rna_family:RF00983
motif_type:1x1
contains_motif
rfam
consensus SS x2
0
rna_family:RF00983
motif_type:2x2
contains_motif
rfam
consensus SS x1
0
rna_family:RF00983
motif_type:hairpin5
contains_motif
rfam
consensus SS x1
0
rna_family:RF00984
motif_type:1x1
contains_motif
rfam
consensus SS x3
0
rna_family:RF00984
motif_type:hairpin6
contains_motif
rfam
consensus SS x1
0
rna_family:RF00996
motif_type:1x1
contains_motif
rfam
consensus SS x2
0
rna_family:RF00996
motif_type:2x2
contains_motif
rfam
consensus SS x1
0
rna_family:RF00996
motif_type:bulge1
contains_motif
rfam
consensus SS x1
0
rna_family:RF00996
motif_type:bulge2
contains_motif
rfam
consensus SS x1
0
rna_family:RF00996
motif_type:bulge3
contains_motif
rfam
consensus SS x1
0
rna_family:RF00996
motif_type:hairpin5
contains_motif
rfam
consensus SS x1
0
rna_family:RF01001
motif_type:1x1
contains_motif
rfam
consensus SS x1
0
rna_family:RF01001
motif_type:bulge2
contains_motif
rfam
consensus SS x1
0
rna_family:RF01921
motif_type:1x1
contains_motif
rfam
consensus SS x1
0
rna_family:RF01921
motif_type:2x2
contains_motif
rfam
consensus SS x1
0
rna_family:RF01921
motif_type:4x4
contains_motif
rfam
consensus SS x1
0
rna_family:RF01921
motif_type:bulge1
contains_motif
rfam
consensus SS x1
0
rna_family:RF01921
motif_type:hairpin4
contains_motif
rfam
consensus SS x1
0
rna_family:RF01924
motif_type:1x2
contains_motif
rfam
consensus SS x1
0
rna_family:RF01924
motif_type:2x2
contains_motif
rfam
consensus SS x1
0
rna_family:RF01924
motif_type:3x3
contains_motif
rfam
consensus SS x1
0
rna_family:RF01922
motif_type:bulge1
contains_motif
rfam
consensus SS x2
0
rna_family:RF01922
motif_type:1x1
contains_motif
rfam
consensus SS x1
0
rna_family:RF01922
motif_type:3x3
contains_motif
rfam
consensus SS x1
0
rna_family:RF01925
motif_type:1x1
contains_motif
rfam
consensus SS x3
0
rna_family:RF01925
motif_type:2x2
contains_motif
rfam
consensus SS x2
0
rna_family:RF01925
motif_type:1x2
contains_motif
rfam
consensus SS x1
0
rna_family:RF02576
motif_type:1x1
contains_motif
rfam
consensus SS x21
0
rna_family:RF02576
motif_type:hairpin3
contains_motif
rfam
consensus SS x6
0
rna_family:RF02576
motif_type:2x2
contains_motif
rfam
consensus SS x5
0
rna_family:RF02576
motif_type:2x5
contains_motif
rfam
consensus SS x5
0
rna_family:RF02576
motif_type:bulge1
contains_motif
rfam
consensus SS x5
0
rna_family:RF02576
motif_type:1x2
contains_motif
rfam
consensus SS x2
0
rna_family:RF02576
motif_type:1x3
contains_motif
rfam
consensus SS x1
0
rna_family:RF02576
motif_type:hairpin6
contains_motif
rfam
consensus SS x1
0
rna_family:RF01019
motif_type:bulge4
contains_motif
rfam
consensus SS x2
0
rna_family:RF01019
motif_type:1x2
contains_motif
rfam
consensus SS x1
0
rna_family:RF01019
motif_type:2x2
contains_motif
rfam
consensus SS x1
0
rna_family:RF01019
motif_type:bulge1
contains_motif
rfam
consensus SS x1
0
rna_family:RF01019
motif_type:bulge2
contains_motif
rfam
consensus SS x1
0
rna_family:RF01019
motif_type:hairpin5
contains_motif
rfam
consensus SS x1
0
rna_family:RF01014
motif_type:1x1
contains_motif
rfam
consensus SS x2
0
rna_family:RF01014
motif_type:2x3
contains_motif
rfam
consensus SS x1
0
rna_family:RF01014
motif_type:3x3
contains_motif
rfam
consensus SS x1
0
rna_family:RF01014
motif_type:hairpin6
contains_motif
rfam
consensus SS x1
0
rna_family:RF01023
motif_type:1x1
contains_motif
rfam
consensus SS x3
0
rna_family:RF01023
motif_type:1x2
contains_motif
rfam
consensus SS x1
0
rna_family:RF01023
motif_type:2x2
contains_motif
rfam
consensus SS x1
0
rna_family:RF01023
motif_type:bulge1
contains_motif
rfam
consensus SS x1
0
rna_family:RF01023
motif_type:bulge2
contains_motif
rfam
consensus SS x1
0
End of preview. Expand in Data Studio

ARSMA-web biomedical knowledge graph (arsma-knowledge-db)

Identifiers and links from Rfam, ClinVar, Reactome, MONDO, HGNC and miRBase, joined to the motif classes of ARSMA-web. 225,183 nodes and 291,432 edges.

file one row is notes
nodes.parquet one node type, name, source
edges.parquet one edge type, source, evidence, specificity
build_report.json — what each source contributed

Motifs are linked at the level of motif class, not occurrence. An Rfam family is linked to the motif classes its consensus secondary structure contains, so a disease reaches a motif class through a gene and a family, not through a specific structure. Only identifiers, labels and joins are redistributed; annotations stay with the upstream providers.

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