src large_stringlengths 7 181 ⌀ | dst large_stringlengths 7 694 ⌀ | type large_stringclasses 16
values | source large_stringclasses 8
values | evidence large_stringlengths 0 218 ⌀ | specificity large_stringclasses 3
values | family_gene_count int32 0 591 ⌀ |
|---|---|---|---|---|---|---|
rna_family:RF02073 | motif_type:1x1 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF02073 | motif_type:1x2 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF02073 | motif_type:2x3 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF02073 | motif_type:hairpin5 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF02073 | motif_type:hairpin7 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF02054 | motif_type:hairpin5 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF02529 | motif_type:1x1 | contains_motif | rfam | consensus SS x2 | 0 | |
rna_family:RF02529 | motif_type:hairpin4 | contains_motif | rfam | consensus SS x2 | 0 | |
rna_family:RF02529 | motif_type:1x2 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF02529 | motif_type:2x3 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF02529 | motif_type:3x4 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF02529 | motif_type:bulge2 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00962 | motif_type:bulge2 | contains_motif | rfam | consensus SS x2 | 0 | |
rna_family:RF00962 | motif_type:1x1 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00962 | motif_type:hairpin7 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00961 | motif_type:1x1 | contains_motif | rfam | consensus SS x3 | 0 | |
rna_family:RF00961 | motif_type:1x2 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00961 | motif_type:bulge1 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00966 | motif_type:1x1 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00966 | motif_type:1x2 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00966 | motif_type:2x2 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00966 | motif_type:3x3 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00963 | motif_type:1x1 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00968 | motif_type:1x2 | contains_motif | rfam | consensus SS x2 | 0 | |
rna_family:RF00968 | motif_type:1x1 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00968 | motif_type:bulge2 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00968 | motif_type:bulge3 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00968 | motif_type:hairpin6 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00969 | motif_type:1x1 | contains_motif | rfam | consensus SS x2 | 0 | |
rna_family:RF00971 | motif_type:1x1 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00971 | motif_type:2x2 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00971 | motif_type:bulge3 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00971 | motif_type:hairpin3 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00970 | motif_type:bulge4 | contains_motif | rfam | consensus SS x2 | 0 | |
rna_family:RF00970 | motif_type:1x1 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00970 | motif_type:1x2 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00970 | motif_type:2x2 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00970 | motif_type:bulge1 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00970 | motif_type:hairpin6 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00974 | motif_type:1x1 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00974 | motif_type:hairpin5 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00976 | motif_type:1x1 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00976 | motif_type:bulge1 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00976 | motif_type:hairpin3 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF02551 | motif_type:hairpin4 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00979 | motif_type:1x1 | contains_motif | rfam | consensus SS x2 | 0 | |
rna_family:RF00979 | motif_type:hairpin6 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00977 | motif_type:1x1 | contains_motif | rfam | consensus SS x2 | 0 | |
rna_family:RF00977 | motif_type:1x3 | contains_motif | rfam | consensus SS x2 | 0 | |
rna_family:RF00983 | motif_type:bulge1 | contains_motif | rfam | consensus SS x3 | 0 | |
rna_family:RF00983 | motif_type:1x1 | contains_motif | rfam | consensus SS x2 | 0 | |
rna_family:RF00983 | motif_type:2x2 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00983 | motif_type:hairpin5 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00984 | motif_type:1x1 | contains_motif | rfam | consensus SS x3 | 0 | |
rna_family:RF00984 | motif_type:hairpin6 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00996 | motif_type:1x1 | contains_motif | rfam | consensus SS x2 | 0 | |
rna_family:RF00996 | motif_type:2x2 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00996 | motif_type:bulge1 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00996 | motif_type:bulge2 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00996 | motif_type:bulge3 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF00996 | motif_type:hairpin5 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF01001 | motif_type:1x1 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF01001 | motif_type:bulge2 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF01921 | motif_type:1x1 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF01921 | motif_type:2x2 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF01921 | motif_type:4x4 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF01921 | motif_type:bulge1 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF01921 | motif_type:hairpin4 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF01924 | motif_type:1x2 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF01924 | motif_type:2x2 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF01924 | motif_type:3x3 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF01922 | motif_type:bulge1 | contains_motif | rfam | consensus SS x2 | 0 | |
rna_family:RF01922 | motif_type:1x1 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF01922 | motif_type:3x3 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF01925 | motif_type:1x1 | contains_motif | rfam | consensus SS x3 | 0 | |
rna_family:RF01925 | motif_type:2x2 | contains_motif | rfam | consensus SS x2 | 0 | |
rna_family:RF01925 | motif_type:1x2 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF02576 | motif_type:1x1 | contains_motif | rfam | consensus SS x21 | 0 | |
rna_family:RF02576 | motif_type:hairpin3 | contains_motif | rfam | consensus SS x6 | 0 | |
rna_family:RF02576 | motif_type:2x2 | contains_motif | rfam | consensus SS x5 | 0 | |
rna_family:RF02576 | motif_type:2x5 | contains_motif | rfam | consensus SS x5 | 0 | |
rna_family:RF02576 | motif_type:bulge1 | contains_motif | rfam | consensus SS x5 | 0 | |
rna_family:RF02576 | motif_type:1x2 | contains_motif | rfam | consensus SS x2 | 0 | |
rna_family:RF02576 | motif_type:1x3 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF02576 | motif_type:hairpin6 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF01019 | motif_type:bulge4 | contains_motif | rfam | consensus SS x2 | 0 | |
rna_family:RF01019 | motif_type:1x2 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF01019 | motif_type:2x2 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF01019 | motif_type:bulge1 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF01019 | motif_type:bulge2 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF01019 | motif_type:hairpin5 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF01014 | motif_type:1x1 | contains_motif | rfam | consensus SS x2 | 0 | |
rna_family:RF01014 | motif_type:2x3 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF01014 | motif_type:3x3 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF01014 | motif_type:hairpin6 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF01023 | motif_type:1x1 | contains_motif | rfam | consensus SS x3 | 0 | |
rna_family:RF01023 | motif_type:1x2 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF01023 | motif_type:2x2 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF01023 | motif_type:bulge1 | contains_motif | rfam | consensus SS x1 | 0 | |
rna_family:RF01023 | motif_type:bulge2 | contains_motif | rfam | consensus SS x1 | 0 |
End of preview. Expand in Data Studio
ARSMA-web biomedical knowledge graph (arsma-knowledge-db)
Identifiers and links from Rfam, ClinVar, Reactome, MONDO, HGNC and miRBase, joined to the motif classes of ARSMA-web. 225,183 nodes and 291,432 edges.
| file | one row is | notes |
|---|---|---|
nodes.parquet |
one node | type, name, source |
edges.parquet |
one edge | type, source, evidence, specificity |
build_report.json |
— | what each source contributed |
Motifs are linked at the level of motif class, not occurrence. An Rfam family is linked to the motif classes its consensus secondary structure contains, so a disease reaches a motif class through a gene and a family, not through a specific structure. Only identifiers, labels and joins are redistributed; annotations stay with the upstream providers.
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