src stringlengths 25 33 ⌀ | dst stringlengths 10 33 ⌀ | type stringclasses 13
values | source stringclasses 3
values | evidence stringclasses 6
values |
|---|---|---|---|---|
seq_group:1x1/CUUAG-GGUUC | motif_type:1x1 | of_type | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:4U4N | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8C01 | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:4U50 | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:6Q8Y | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:6I7O | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8PNN | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8CGN | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:6S47 | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:5LL6 | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:4U51 | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8T3B | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8K2D | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:6ZCE | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8C83 | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:7ZW0 | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:7D5S | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:6LQU | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:6GQB | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:6SNT | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:7WTO | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8P4V | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:6Z6J | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8T3E | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8T3D | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8CCS | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:9AXV | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:6Y7C | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8Y0U | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:7Q08 | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:6RBD | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8S8J | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8C3A | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:4U52 | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8S8G | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8S8E | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:7Q0R | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:7Q0F | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:6ZU9 | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8T3A | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:4U4O | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:4U4U | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8Q5I | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:6GQV | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8P9A | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8OJ3 | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:6Z6K | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:6TB3 | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8P85 | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8OI5 | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:4U4Z | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8OGJ | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:7PZY | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:5I4L | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8T3F | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8OH6 | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:6HHQ | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:4U3M | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8CF5 | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:4V7R | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:7Q0P | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8EWB | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8CAS | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:7ZUX | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:5OBM | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:6GQ1 | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:8CQ7 | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:5NDG | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | pdb_entry:4U53 | occurs_in | cossmos | |
seq_group:1x1/CUUAG-GGUUC | rna_family:RF01960 | in_family | cossmos_xref | chain-level Rfam xref on the motif row |
seq_group:1x1/CUUAG-GGUUC | ligand:PAR | binds | cossmos | co-occurs in the deposited structure |
seq_group:1x1/CUUAG-GGUUC | ligand:GET | binds | cossmos | co-occurs in the deposited structure |
seq_group:1x1/CUUAG-GGUUC | ligand:LLL | binds | cossmos | co-occurs in the deposited structure |
seq_group:1x1/GGAAC-CCAUG | motif_type:1x1 | of_type | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:8CG8 | occurs_in | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:8T2X | occurs_in | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:7D4I | occurs_in | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:8CGN | occurs_in | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:7ZRS | occurs_in | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:7ZPQ | occurs_in | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:9F9S | occurs_in | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:8C83 | occurs_in | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:6GQB | occurs_in | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:8CCS | occurs_in | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:8EVP | occurs_in | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:8EWC | occurs_in | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:8UTI | occurs_in | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:6LQP | occurs_in | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:6Y7C | occurs_in | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:8S8G | occurs_in | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:4U52 | occurs_in | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:8CKU | occurs_in | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:8T30 | occurs_in | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:8CF5 | occurs_in | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:8BQX | occurs_in | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:8XU8 | occurs_in | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:7ZUX | occurs_in | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:6KE6 | occurs_in | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:7B7D | occurs_in | cossmos | |
seq_group:1x1/GGAAC-CCAUG | pdb_entry:6GQ1 | occurs_in | cossmos |
End of preview. Expand in Data Studio
ARSMA-web sequence-relation graph (motif-knowledge-db)
A graph centered on motif sequence groups, built from ARSMA-web's own stores: where each sequence occurs, which RNA family it is in, what binds it and which sequences are variants of it.
| file | one row is | notes |
|---|---|---|
nodes.parquet |
one node | type: seq_group, pdb_entry, ligand, rna_family, modification, motif_type; sequence-group nodes carry occurrence and contact counts |
edges.parquet |
one edge | type: occurs_in, in_family, of_type, variant_of, binds, has_modification, binds_cofactor |
209,816 edges. The CoSSMos and PDB citations apply.
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