Datasets:

huggingbahl21
/

causalbench-k562

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CausalBench K562

Filtered K562 day 6 single-cell perturbation data: 162,751 cells, 622 genes, and one intervention column.

Gene columns use Ensembl IDs. Expression values are normalized and log-transformed using the original CausalBench preprocessing (filter=True, commit 1a2143c).

intervention contains:

A gene ID: the targeted gene.
non-targeting: a control cell.
excluded: an intervention label not retained by upstream preprocessing.

The gzip TSV is at real/causalbench/data/causalbench_k562.tsv.gz. Values, gene order, and labels were checked against the upstream NPZ. No ground-truth graph is included.

Sources: raw K562 data and CausalBench paper.

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