OpenPNM / data /tests /unit /algorithms /BCTest.py
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import numpy as np
import pytest
import openpnm as op
from openpnm.models import collections
class BCTest:
def setup_class(self):
np.random.seed(0)
self.pn = op.network.Cubic(shape=[3, 3, 1], spacing=1e-4)
self.pn.add_model_collection(collections.geometry.cones_and_cylinders)
self.pn.regenerate_models()
self.air = op.phase.Air(network=self.pn, name="air")
self.air.add_model_collection(collections.physics.standard)
self.air.regenerate_models()
def test_add(self):
fd = op.algorithms.FickianDiffusion(network=self.pn, phase=self.air)
fd.set_value_BC(pores=[0, 1, 2], values=3.0, mode='add')
mask = np.isfinite(fd['pore.bc.value'])
assert mask.sum() == 3
assert fd['pore.bc.value'][mask].sum() == 9.0
assert np.isfinite(fd['pore.bc.rate']).sum() == 0
with pytest.raises(Exception):
fd.set_value_BC(pores=[2, 3], values=3.0, mode='add')
with pytest.raises(Exception):
fd.set_rate_BC(pores=[0, 1, 2], rates=3.0, mode='add')
fd.set_value_BC(mode='remove')
fd.set_rate_BC(pores=[0, 1, 2], rates=3.0, mode='add')
mask = np.isfinite(fd['pore.bc.rate'])
assert mask.sum() == 3
def test_overwrite(self):
fd = op.algorithms.FickianDiffusion(network=self.pn, phase=self.air)
fd['pore.bc.rate'][1] = 1.0
fd['pore.bc.value'][0] = 1.0
fd.set_value_BC(pores=[1, 2], values=3.0, mode='overwrite')
mask = np.isfinite(fd['pore.bc.value'])
assert mask.sum() == 3
assert fd['pore.bc.value'][mask].sum() == 7.0
assert np.isfinite(fd['pore.bc.rate']).sum() == 0
fd.set_rate_BC(pores=[0, 1, 2], rates=5.0, mode='overwrite')
mask = np.isfinite(fd['pore.bc.rate'])
assert mask.sum() == 3
assert fd['pore.bc.rate'][mask].sum() == 15.0
assert np.isfinite(fd['pore.bc.rate']).sum() == 3
assert np.isfinite(fd['pore.bc.value']).sum() == 0
# Mimic removal of all bcs
fd['pore.bc.rate'][1] = 1.0
fd['pore.bc.value'][0] = 1.0
fd.set_BC(pores=None, bctype=[], bcvalues=np.nan, mode='overwrite')
assert np.isfinite(fd['pore.bc.rate']).sum() == 0
assert np.isfinite(fd['pore.bc.value']).sum() == 0
def test_remove(self):
fd = op.algorithms.FickianDiffusion(network=self.pn, phase=self.air)
# Remove given type from given pores
fd['pore.bc.rate'][1] = 1.0
fd['pore.bc.value'][0] = 1.0
fd.set_value_BC(pores=[0, 1], mode='remove')
mask = np.isfinite(fd['pore.bc.value'])
assert mask.sum() == 0
assert np.isfinite(fd['pore.bc.rate']).sum() == 1
# Remove given type from all pores
fd['pore.bc.rate'][1] = 1.0
fd['pore.bc.value'][0] = 1.0
fd.set_BC(pores=None, bctype='rate', mode='remove')
assert np.isfinite(fd['pore.bc.value']).sum() == 1
assert np.isfinite(fd['pore.bc.rate']).sum() == 0
# Remove all types from all pores
fd['pore.bc.rate'][1] = 1.0
fd['pore.bc.value'][0] = 1.0
fd.set_BC(bctype=fd['pore.bc'].keys(), mode='remove')
assert np.isfinite(fd['pore.bc.value']).sum() == 0
assert np.isfinite(fd['pore.bc.rate']).sum() == 0
# Remove all types from all pores given bctype is []
fd['pore.bc.rate'][1] = 1.0
fd['pore.bc.value'][0] = 1.0
fd.set_BC(mode='remove')
assert np.isfinite(fd['pore.bc.value']).sum() == 0
assert np.isfinite(fd['pore.bc.rate']).sum() == 0
# Remove all types from given pores
fd['pore.bc.rate'][1] = 1.0
fd['pore.bc.value'][0] = 1.0
fd.set_BC(pores=[0, 1], mode='remove')
assert np.isfinite(fd['pore.bc.value']).sum() == 0
assert np.isfinite(fd['pore.bc.rate']).sum() == 0
def test_outflow(self):
del self.air.models['throat.diffusive_conductance']
del self.air.models['throat.hydraulic_conductance']
self.air['throat.diffusive_conductance'] = 1e-15
self.air['throat.hydraulic_conductance'] = 1e-15
flow = op.algorithms.StokesFlow(network=self.pn, phase=self.air)
flow.set_value_BC(pores=self.pn.pores('left'), values=1)
flow.set_value_BC(pores=self.pn.pores('right'), values=0)
flow.run()
ad = op.algorithms.AdvectionDiffusion(network=self.pn, phase=self.air)
ad.settings['cache'] = False
ad.set_value_BC(pores=self.pn.pores('front'), values=1)
ad.set_outflow_BC(pores=self.pn.pores('back'), mode='overwrite')
ad.run()
def test_inlets_and_outlets(self):
nwp = op.phase.Phase(network=self.pn)
nwp['throat.surface_tension'] = 0.480
nwp['throat.contact_angle'] = 140
nwp.add_model(propname='throat.entry_pressure',
model=op.models.physics.capillary_pressure.washburn)
nwp.add_model(propname='pore.entry_pressure',
model=op.models.physics.capillary_pressure.washburn,
contact_angle=140,
surface_tension=0.480,
diameter='pore.diameter')
drn = op.algorithms.Drainage(network=self.pn, phase=nwp)
drn.set_inlet_BC(pores=self.pn.pores('left'))
pressures = np.logspace(np.log10(0.1e6), np.log10(8e6), 40)
drn.run(pressures)
drn.set_outlet_BC(pores=self.pn.pores('right'))
drn.apply_trapping()
def test_modes_as_list(self):
# check mode clear, with and without force
fd = op.algorithms.FickianDiffusion(network=self.pn, phase=self.air)
fd['pore.bc.rate'][1] = 1.0
fd['pore.bc.value'][0] = 1.0
fd.set_BC(bctype=['value', 'rate'], mode='remove')
assert np.isfinite(fd['pore.bc.value']).sum() == 0
assert np.isfinite(fd['pore.bc.rate']).sum() == 0
if __name__ == "__main__":
t = BCTest()
t.setup_class()
self = t
for item in t.__dir__():
if item.startswith("test"):
print(f"Running test: {item}")
t.__getattribute__(item)()