OpenPNM / data /tests /unit /utils /UtilsTest.py
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import numpy as np
import openpnm as op
class UtilsTest:
def setup_class(self):
self.net = op.network.Cubic(shape=[3, 3, 3])
def teardown_class(self):
ws = op.Workspace()
ws.clear()
def test_nested_dict(self):
d = op.utils.NestedDict()
d['top']['middle']['bottom'] = 1
assert d == {'top': {'middle': {'bottom': 1}}}
s = d.__str__()
assert s == '-top\n--middle\n---bottom\n'
a = d.to_dict()
assert isinstance(a, dict)
def test_printable_list(self):
L = op.utils.PrintableList(['item1', 'item2', 'item2'])
s = L.__str__().split('\n')
assert len(s) == 5
def test_printable_dict(self):
D = op.utils.PrintableDict(**{'item1': 1, 'item2': 2,
'item3': np.array([1, 2])})
s = D.__str__().split('\n')
assert len(s) == 7
# r = D.__repr__()
# assert r == "{'item1': 1, 'item2': 2, 'item3': array([1, 2])}"
def test_is_symmetric_w_rtol(self):
A = np.array([[1, 2, 3], [2, 4, 6], [3.000001, 6, 99]])
is_sym = op.utils.is_symmetric(A, rtol=1e-4)
assert is_sym
is_sym = op.utils.is_symmetric(A, rtol=1e-6)
assert not is_sym
def test_is_symmetric_FickianDiffusion_must_be_symmetric(self):
net = op.network.Cubic(shape=[5, 5, 5])
net.add_model_collection(
op.models.collections.geometry.cones_and_cylinders)
net.regenerate_models()
air = op.phase.Air(network=net)
air.add_model_collection(op.models.collections.phase.air)
air.add_model_collection(op.models.collections.physics.standard)
air.regenerate_models()
fd = op.algorithms.FickianDiffusion(network=net, phase=air)
fd.set_value_BC(pores=net.pores("left"), values=1.0)
fd.set_value_BC(pores=net.pores("right"), values=0.1)
assert op.utils.is_symmetric(fd.A)
def test_is_symmetric_AdvectionDiffusion_must_be_nonsymmetric(self):
net = op.network.Cubic(shape=[5, 5, 5])
net.add_model_collection(
op.models.collections.geometry.cones_and_cylinders)
net.regenerate_models()
air = op.phase.Air(network=net)
air.add_model_collection(
op.models.collections.phase.air)
air.add_model_collection(op.models.collections.physics.standard)
air.regenerate_models()
ad = op.algorithms.AdvectionDiffusion(network=net, phase=air)
ad.set_value_BC(pores=net.pores("left"), values=1.0)
ad.set_value_BC(pores=net.pores("right"), values=0.1)
# Uniform pressure field --> no advection --> still symmetric
assert op.utils.is_symmetric(ad.A)
sf = op.algorithms.StokesFlow(network=net, phase=air)
sf.set_value_BC(pores=net.pores("left"), values=1.0)
sf.set_value_BC(pores=net.pores("right"), values=0.0)
sf.run()
air.update(sf.soln)
ad.settings._update({"cache": False})
ad._build_A()
# Non-uniform pressure field --> positive advection --> non-symmetric
assert not op.utils.is_symmetric(ad.A)
def test_is_valid_propname(self):
assert op.utils.is_valid_propname("pore.foo")
assert op.utils.is_valid_propname("pore.zed.foo")
assert op.utils.is_valid_propname("throat.bar")
assert op.utils.is_valid_propname("throat.bar.foo")
assert not op.utils.is_valid_propname("pores.blah")
assert not op.utils.is_valid_propname("foo.blah")
assert not op.utils.is_valid_propname("pore")
assert not op.utils.is_valid_propname("throat")
assert not op.utils.is_valid_propname("pore.")
assert not op.utils.is_valid_propname("throat.")
assert not op.utils.is_valid_propname("pore.foo..bar")
if __name__ == '__main__':
t = UtilsTest()
self = t
t.setup_class()
for item in t.__dir__():
if item.startswith('test'):
print(f"Running test: {item}")
t.__getattribute__(item)()