| """Test preprocessing client.""" |
| import os |
| from pathlib import Path |
|
|
| import pytest |
|
|
| from haddock.clis.cli_pp import ap, main |
|
|
| from . import broken_pdb, corrected_pdb |
|
|
|
|
| def test_pp_cli(): |
| """ |
| Test `haddock-pp` client with broken PDB. |
| |
| This is the same PDB used to test the preprocessing library. |
| """ |
| main(broken_pdb) |
| output = Path(Path.cwd(), 'broken_processed.pdb') |
| assert output.exists() |
|
|
| result = output.read_text().strip(os.linesep) |
| expected = corrected_pdb.read_text().strip(os.linesep) |
| assert result == expected |
|
|
| output.unlink() |
|
|
|
|
| @pytest.mark.parametrize( |
| "arg,key,value", |
| [ |
| ('-d', "dry", True), |
| ('--dry', "dry", True), |
| ('-t file1.top file2.top', "topfile", ['file1.top', 'file2.top']), |
| ('--topfile file1.top file2.top', "topfile", ['file1.top', 'file2.top']), |
| ('-s somesuffix', 'suffix', 'somesuffix'), |
| ('--suffix somesuffix', 'suffix', 'somesuffix'), |
| ('-odir somedir', 'output_directory', Path('somedir')), |
| ('--output-directory somedir', 'output_directory', Path('somedir')), |
| ] |
| ) |
| def test_cli_args(arg, key, value): |
| """Test adding arguments to client.""" |
| cmd = ap.parse_args(('some-file.pdb ' + arg).split()) |
| assert value == vars(cmd)[key] |
|
|
