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The dataset generation failed
Error code: DatasetGenerationError
Exception: ArrowInvalid
Message: Failed to parse string: 'TRBD2' as a scalar of type double
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1837, in _prepare_split_single
writer.write_table(table)
~~~~~~~~~~~~~~~~~~^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/arrow_writer.py", line 765, in write_table
self._write_table(pa_table, writer_batch_size=writer_batch_size)
~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/arrow_writer.py", line 773, in _write_table
pa_table = table_cast(pa_table, self._schema)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2369, in table_cast
return cast_table_to_schema(table, schema)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2303, in cast_table_to_schema
cast_array_to_feature(
~~~~~~~~~~~~~~~~~~~~~^
table[name] if name in table_column_names else pa.array([None] * len(table), type=schema.field(name).type),
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
feature,
^^^^^^^^
)
^
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 1852, in wrapper
return pa.chunked_array([func(chunk, *args, **kwargs) for chunk in array.chunks])
~~~~^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2143, in cast_array_to_feature
return array_cast(
array,
...<2 lines>...
allow_decimal_to_str=allow_decimal_to_str,
)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 1854, in wrapper
return func(array, *args, **kwargs)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2006, in array_cast
return array.cast(pa_type)
~~~~~~~~~~^^^^^^^^^
File "pyarrow/array.pxi", line 1147, in pyarrow.lib.Array.cast
File "/usr/local/lib/python3.14/site-packages/pyarrow/compute.py", line 412, in cast
return call_function("cast", [arr], options, memory_pool)
File "pyarrow/_compute.pyx", line 604, in pyarrow._compute.call_function
File "pyarrow/_compute.pyx", line 399, in pyarrow._compute.Function.call
result = GetResultValue(
File "pyarrow/error.pxi", line 155, in pyarrow.lib.pyarrow_internal_check_status
return check_status(status)
File "pyarrow/error.pxi", line 92, in pyarrow.lib.check_status
raise convert_status(status)
pyarrow.lib.ArrowInvalid: Failed to parse string: 'TRBD2' as a scalar of type double
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1369, in compute_config_parquet_and_info_response
parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
~~~~~~~~~~~~~~~~~~~~~~~~~^
builder, max_dataset_size_bytes=max_dataset_size_bytes
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
)
^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 948, in stream_convert_to_parquet
builder._prepare_split(split_generator=splits_generators[split], file_format="parquet")
~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1683, in _prepare_split
for job_id, done, content in self._prepare_split_single(
~~~~~~~~~~~~~~~~~~~~~~~~~~^
gen_kwargs=gen_kwargs, job_id=job_id, **_prepare_split_args
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
):
^
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1869, in _prepare_split_single
raise DatasetGenerationError("An error occurred while generating the dataset") from e
datasets.exceptions.DatasetGenerationError: An error occurred while generating the datasetNeed help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
sequence_id string | locus string | v_call string | d_call null | j_call string | junction string | junction_aa string | duplicate_count int64 | productive string |
|---|---|---|---|---|---|---|---|---|
seq1 | TRA | TRAV13-1 | null | TRAJ50 | TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT | CAASETSYDKVIF | 6,907 | T |
seq2 | TRA | TRAV21 | null | TRAJ50 | TGTGCTGTCGATCTCATGAAAACCTCCTACGACAAGGTGATATTT | CAVDLMKTSYDKVIF | 4,867 | T |
seq3 | TRA | TRAV13-2 | null | TRAJ45 | TGTGCAGACTCCGGAGGAGGTGCTGACGGACTCACCTTT | CADSGGGADGLTF | 4,592 | T |
seq4 | TRA | TRAV12-3 | null | TRAJ39 | TGTGCGATTGGGCCAGGCAACATGCTCACCTTT | CAIGPGNMLTF | 3,887 | T |
seq5 | TRA | TRAV13-1 | null | TRAJ11 | TGTGCAGCAAAAGAAGGATACAGCACCCTCACCTTT | CAAKEGYSTLTF | 2,762 | T |
seq6 | TRA | TRAV35 | null | TRAJ49 | TGTGCTGGTCACACCGGTAACCAGTTCTATTTT | CAGHTGNQFYF | 2,694 | T |
seq7 | TRA | TRAV8-3 | null | TRAJ21 | TGTGCTGTGGGTGACAACTTCAACAAATTTTACTTT | CAVGDNFNKFYF | 1,724 | T |
seq8 | TRA | TRAV12-2 | null | TRAJ6 | TGTGCCGTGAACTGGGAGGAACAGGGAGGAAGCTACATACCTACATTT | CAVNWEEQGGSYIPTF | 1,417 | T |
seq9 | TRA | TRAV12-3 | null | TRAJ27 | TGTGCAATGAAGAGCACCAATGCAGGCAAATCAACCTTT | CAMKSTNAGKSTF | 1,095 | T |
seq10 | TRA | TRAV8-2 | null | TRAJ22 | TGTGTTGGTCGTAAGGGTTCTGCAAGGCAACTGACCTTT | CVGRKGSARQLTF | 1,080 | T |
seq11 | TRA | TRAV24 | null | TRAJ52 | TGTGCCTTTATAGGGGATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT | CAFIGDAGGTSYGKLTF | 1,074 | T |
seq12 | TRA | TRAV5 | null | TRAJ6 | TGTGCAGAGATGGAAGGAGGAAGCTACATACCTACATTT | CAEMEGGSYIPTF | 1,063 | T |
seq13 | TRA | TRAV27 | null | TRAJ42 | TGTGCAGGAGGAGGAAGCCAAGGAAATCTCATCTTT | CAGGGSQGNLIF | 1,055 | T |
seq14 | TRA | TRAV22 | null | TRAJ47 | TGTGCTGTGGAGCCTTTATACGGAAACAAGCTGGTCTTT | CAVEPLYGNKLVF | 981 | T |
seq15 | TRA | TRAV3 | null | TRAJ37 | TGTGCTGTGAGAGACGGTGGAATGGGAAGCAACACAGGCAAACTAATCTTT | CAVRDGGMGSNTGKLIF | 897 | T |
seq16 | TRA | TRAV12-3 | null | TRAJ9 | TGTGCCCGGGGTGGAGGCTTCAAAACTATCTTT | CARGGGFKTIF | 845 | T |
seq17 | TRA | TRAV30 | null | TRAJ20 | TGCGGCACAGAGTATCCTAACGACTACAAGCTCAGCTTT | CGTEYPNDYKLSF | 833 | T |
seq18 | TRA | TRAV8-4 | null | TRAJ20 | TGTGCTGTGATCCAAATTAACGACTACAAGCTCAGCTTT | CAVIQINDYKLSF | 810 | T |
seq19 | TRA | TRAV19 | null | TRAJ49 | TGTGCTCTGAGGGCCGGTAACCAGTTCTATTTT | CALRAGNQFYF | 769 | T |
seq20 | TRA | TRAV26-1 | null | TRAJ17 | TGCATCCTATGGGTAGCTGCAGGCAACAAGCTAACTTTT | CILWVAAGNKLTF | 760 | T |
seq21 | TRA | TRAV13-2 | null | TRAJ53 | TGTGCAGAGACCCATAGTGGAGGTAGCAACTATAAACTGACATTT | CAETHSGGSNYKLTF | 674 | T |
seq22 | TRA | TRAV3 | null | TRAJ45 | TGTGCTGTGGCTAAAGATCTCCAGAATTCAGGAGGAGGTGCTGACGGACTCACCTTT | CAVAKDLQNSGGGADGLTF | 646 | T |
seq23 | TRA | TRAV12-1 | null | TRAJ39 | TGTGGAGCGGCAGGCAACATGCTCACCTTT | CGAAGNMLTF | 637 | T |
seq24 | TRA | TRAV10 | null | TRAJ27 | TGTGTGGGATACACCAATGCAGGCAAATCAACCTTT | CVGYTNAGKSTF | 607 | T |
seq25 | TRA | TRAV8-3 | null | TRAJ30 | TGTGCTGTGACCAGAGATGACAAGATCATCTTT | CAVTRDDKIIF | 592 | T |
seq26 | TRA | TRAV3 | null | TRAJ6 | TGTGCTGTGAGTGCAGCATCAGGAGGAAGCTACATACCTACATTT | CAVSAASGGSYIPTF | 567 | T |
seq27 | TRA | TRAV14DV4 | null | TRAJ4 | TGTGCAATGAGAGGGCCTATTTCTGGTGGCTACAATAAGCTGATTTTT | CAMRGPISGGYNKLIF | 532 | T |
seq28 | TRA | TRAV21 | null | TRAJ4 | TGTGCTGTTTCCCTTTCTGGTGGCTACAATAAGCTGATTTTT | CAVSLSGGYNKLIF | 508 | T |
seq29 | TRA | TRAV5 | null | TRAJ34 | TGTGCAGAGAGTGAGGGACCGACCTACACCGACAAGCTCATCTTT | CAESEGPTYTDKLIF | 507 | T |
seq30 | TRA | TRAV24 | null | TRAJ36 | TGTGCCTTTTTAGGTGGGGCAAACAACCTCTTCTTT | CAFLGGANNLFF | 506 | T |
seq31 | TRA | TRAV1-2 | null | TRAJ33 | TGTGCTGTGAGAGATAGCAACTATCAGTTAATCTGG | CAVRDSNYQLIW | 501 | T |
seq32 | TRA | TRAV26-1 | null | TRAJ54 | TGCATCGTCAGAGGCGCTGATCAGGGAGCCCAGAAGCTGGTATTT | CIVRGADQGAQKLVF | 498 | T |
seq33 | TRA | TRAV12-1 | null | TRAJ50 | TGTGTGGTGACGGAAACCTCCTACGACAAGGTGATATTT | CVVTETSYDKVIF | 494 | T |
seq34 | TRA | TRAV1-2 | null | TRAJ33 | TGTGCTGTGATGGATAGCAACTATCAGTTAATCTGG | CAVMDSNYQLIW | 483 | T |
seq35 | TRA | TRAV13-1 | null | TRAJ20 | TGTGCAGCAAGTGGGTACGACTACAAGCTCAGCTTT | CAASGYDYKLSF | 478 | T |
seq36 | TRA | TRAV1-2 | null | TRAJ29 | TGTGCTGTGAGAGATCATTCAGGAAACACACCTCTTGTCTTT | CAVRDHSGNTPLVF | 462 | T |
seq37 | TRA | TRAV21 | null | TRAJ26 | TGTGCTGTGCATGGCTATGGTCAGAATTTTGTCTTT | CAVHGYGQNFVF | 460 | T |
seq38 | TRA | TRAV12-3 | null | TRAJ32 | TGTGCAATGAACCCGGCGTGGGGTGGTGCTACAAACAAGCTCATCTTT | CAMNPAWGGATNKLIF | 452 | T |
seq39 | TRA | TRAV5 | null | TRAJ33 | TGTGCAGAGACCCAGGATAGCAACTATCAGTTAATCTGG | CAETQDSNYQLIW | 439 | T |
seq40 | TRA | TRAV8-3 | null | TRAJ7 | TGTGCTGTCTTCCTGTATGGGAACAACAGACTCGCTTTT | CAVFLYGNNRLAF | 438 | T |
seq41 | TRA | TRAV12-1 | null | TRAJ31 | TGTGTGGTGAACATGGACAATGCCAGACTCATGTTT | CVVNMDNARLMF | 413 | T |
seq42 | TRA | TRAV2 | null | TRAJ24 | TGTGCTGTGGAGGGTCCAACTGACAGCTGGGGGAAATTCCAGTTT | CAVEGPTDSWGKFQF | 386 | T |
seq43 | TRA | TRAV6 | null | TRAJ17 | TGTGCTCTCCTCGAGATGGTGATCAAAGCTGCAGGCAACAAGCTAACTTTT | CALLEMVIKAAGNKLTF | 384 | T |
seq44 | TRA | TRAV14DV4 | null | TRAJ5 | TGTGCAATGAGAGACCCACAGGGGGGCAGGAGAGCACTTACTTTT | CAMRDPQGGRRALTF | 378 | T |
seq45 | TRA | TRAV8-3 | null | TRAJ31 | TGTGCTGTGGGGACCGCCAGACTCATGTTT | CAVGTARLMF | 360 | T |
seq46 | TRA | TRAV19 | null | TRAJ17 | TGTGCTCTGAAACTGATCAAAGCTGCAGGCAACAAGCTAACTTTT | CALKLIKAAGNKLTF | 358 | T |
seq47 | TRA | TRAV9-2 | null | TRAJ33 | TGTGCTCGGGAGCACATGGATAGCAACTATCAGTTAATCTGG | CAREHMDSNYQLIW | 356 | T |
seq48 | TRA | TRAV3 | null | TRAJ26 | TGTGCTGTGAGACTACATAACTATGGTCAGAATTTTGTCTTT | CAVRLHNYGQNFVF | 352 | T |
seq49 | TRA | TRAV17 | null | TRAJ53 | TGTGCTACGGACGCGAGTGGAGGTAGCAACTATAAACTGACATTT | CATDASGGSNYKLTF | 352 | T |
seq50 | TRA | TRAV38-1 | null | TRAJ52 | TGTGCTTTCATGAAGGGTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT | CAFMKGAGGTSYGKLTF | 352 | T |
seq51 | TRA | TRAV29DV5 | null | TRAJ37 | TGTGCAGCAAGCAACACAGGCAAACTAATCTTT | CAASNTGKLIF | 346 | T |
seq52 | TRA | TRAV5 | null | TRAJ37 | TGTGCAGAGGGGGGCAACACAGGCAAACTAATCTTT | CAEGGNTGKLIF | 342 | T |
seq53 | TRA | TRAV13-1 | null | TRAJ50 | TGTGCAGCATCAGAAACCTCCTACGACAAGGTGATATTT | CAASETSYDKVIF | 339 | T |
seq54 | TRA | TRAV26-2 | null | TRAJ52 | TGCATCCTGAGGGATCTAAATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT | CILRDLNAGGTSYGKLTF | 338 | T |
seq55 | TRA | TRAV13-1 | null | TRAJ50 | TGTGCAGCAATGGAAACCTCCTACGACAAGGTGATATTT | CAAMETSYDKVIF | 326 | T |
seq56 | TRA | TRAV41 | null | TRAJ57 | TGTGCTGTCTTGGGAACTCAGGGCGGATCTGAAAAGCTGGTCTTT | CAVLGTQGGSEKLVF | 320 | T |
seq57 | TRA | TRAV8-1 | null | TRAJ22 | TGTGCCGTGAGATCTTCTGGTTCTGCAAGGCAACTGACCTTT | CAVRSSGSARQLTF | 316 | T |
seq58 | TRA | TRAV26-2 | null | TRAJ50 | TGCATCCTGCGAGAAACCTCCTACGACAAGGTGATATTT | CILRETSYDKVIF | 311 | T |
seq59 | TRA | TRAV22 | null | TRAJ37 | TGTGCGGGGAGCCCTAGCAACACAGGCAAACTAATCTTT | CAGSPSNTGKLIF | 309 | T |
seq60 | TRA | TRAV14DV4 | null | TRAJ4 | TGTGCAATGAGACCTCCCTTTAGGGGTGGCTACAATAAGCTGATTTTT | CAMRPPFRGGYNKLIF | 295 | T |
seq61 | TRA | TRAV27 | null | TRAJ42 | TGTGCAGGGGGGGGAAGCCAAGGAAATCTCATCTTT | CAGGGSQGNLIF | 291 | T |
seq62 | TRA | TRAV13-1 | null | TRAJ42 | TGTGCTTATGGAGGAAGCCAAGGAAATCTCATCTTT | CAYGGSQGNLIF | 272 | T |
seq63 | TRA | TRAV19 | null | TRAJ5 | TGTGCTCTGAGTGAGGCGCTGGGGGGCAGGAGAGCACTTACTTTT | CALSEALGGRRALTF | 268 | T |
seq64 | TRA | TRAV39 | null | TRAJ26 | TGTGCCGTGGACTTCCGGGATAACTATGGTCAGAATTTTGTCTTT | CAVDFRDNYGQNFVF | 268 | T |
seq65 | TRA | TRAV27 | null | TRAJ42 | TGTGCAGGAGGGGGAAGCCAAGGAAATCTCATCTTT | CAGGGSQGNLIF | 259 | T |
seq66 | TRA | TRAV10 | null | TRAJ4 | TGTGTGGTGCGATCTGGTGGCTACAATAAGCTGATTTTT | CVVRSGGYNKLIF | 252 | T |
seq67 | TRA | TRAV17 | null | TRAJ53 | TGTGCTACGGAAAATAGTGGAGGTAGCAACTATAAACTGACATTT | CATENSGGSNYKLTF | 252 | T |
seq68 | TRA | TRAV19 | null | TRAJ17 | TGTGCTCTGAGTGTGATCAAAGCTGCAGGCAACAAGCTAACTTTT | CALSVIKAAGNKLTF | 244 | T |
seq69 | TRA | TRAV1-2 | null | TRAJ12 | TGTGCTGTGATGGATAGCAGCTATAAATTGATCTTC | CAVMDSSYKLIF | 244 | T |
seq70 | TRA | TRAV8-3 | null | TRAJ5 | TGTGCTGTGGACCCTATGGACACGGGCAGGAGAGCACTTACTTTT | CAVDPMDTGRRALTF | 241 | T |
seq71 | TRA | TRAV26-2 | null | TRAJ43 | TGCATCCTGAGGGAATTTTACAATGACATGCGCTTT | CILREFYNDMRF | 240 | T |
seq72 | TRA | TRAV35 | null | TRAJ42 | TGTGCTGGCCAGTCCGGGCGCGTGGGAGGAAGCCAAGGAAATCTCATCTTT | CAGQSGRVGGSQGNLIF | 235 | T |
seq73 | TRA | TRAV14DV4 | null | TRAJ22 | TGTGCAATGAGACGCCCTATTTCTTCTGGTTCTGCAAGGCAACTGACCTTT | CAMRRPISSGSARQLTF | 232 | T |
seq74 | TRA | TRAV5 | null | TRAJ31 | TGTGCAGAGGATAACAATGCCAGACTCATGTTT | CAEDNNARLMF | 224 | T |
seq75 | TRA | TRAV27 | null | TRAJ42 | TGTGCAGGAGCAGGAAGCCAAGGAAATCTCATCTTT | CAGAGSQGNLIF | 214 | T |
seq76 | TRA | TRAV5 | null | TRAJ30 | TGTGCAGAGAGCCTGTGGGATGACAAGATCATCTTT | CAESLWDDKIIF | 213 | T |
seq77 | TRA | TRAV17 | null | TRAJ36 | TGTGCCCAAACTGGGGCAAACAACCTCTTCTTT | CAQTGANNLFF | 213 | T |
seq78 | TRA | TRAV38-2DV8 | null | TRAJ48 | TGTGCTTATAGGGCCCCGAGAGGAAATGAGAAATTAACCTTT | CAYRAPRGNEKLTF | 213 | T |
seq79 | TRA | TRAV19 | null | TRAJ45 | TGTGCTCTGAGTGTTTTTTCAGGAGGAGGTGCTGACGGACTCACCTTT | CALSVFSGGGADGLTF | 212 | T |
seq80 | TRA | TRAV9-2 | null | TRAJ30 | TGTGCTCTTCTGAACAGAGATGACAAGATCATCTTT | CALLNRDDKIIF | 211 | T |
seq81 | TRA | TRAV17 | null | TRAJ6 | TGTGCTACGGAGGGGGCGAGCGGAGGAAGCTACATACCTACATTT | CATEGASGGSYIPTF | 208 | T |
seq82 | TRA | TRAV21 | null | TRAJ43 | TGTGCTGTGTGGTACATGCGCTTT | CAVWYMRF | 204 | T |
seq83 | TRA | TRAV34 | null | TRAJ3 | TGTGGAGCAGACTCGCGGTACAGCAGTGCTTCCAAGATAATCTTT | CGADSRYSSASKIIF | 195 | T |
seq84 | TRA | TRAV27 | null | TRAJ44 | TGTGCAGGAGCTGACGGCACTGCCAGTAAACTCACCTTT | CAGADGTASKLTF | 195 | T |
seq85 | TRA | TRAV1-1 | null | TRAJ15 | TGCGCTGTGAGAGATTCAGCAGGAACTGCTCTGATCTTT | CAVRDSAGTALIF | 195 | T |
seq86 | TRA | TRAV13-1 | null | TRAJ12 | TGTGCAGCAGCCCGGATGGATAGCAGCTATAAATTGATCTTC | CAAARMDSSYKLIF | 195 | T |
seq87 | TRA | TRAV29DV5 | null | TRAJ44 | TGTGCAGCAAGCGTTAGTATTTGGACCGGCACTGCCAGTAAACTCACCTTT | CAASVSIWTGTASKLTF | 188 | T |
seq88 | TRA | TRAV1-2 | null | TRAJ6 | TGTGCTGTGAGGTCATCAGGAGGAAGCTACATACCTACATTT | CAVRSSGGSYIPTF | 187 | T |
seq89 | TRA | TRAV17 | null | TRAJ43 | TGTGCTCATGCCCCTCTGGATGACATGCGCTTT | CAHAPLDDMRF | 184 | T |
seq90 | TRA | TRAV13-2 | null | TRAJ49 | TGTGCAGAGATCCGAGGGAGGGACCAGTTCTATTTT | CAEIRGRDQFYF | 181 | T |
seq91 | TRA | TRAV38-2DV8 | null | TRAJ52 | TGTGCTTATAGTCCCGCCGCTGGTGGTACTAGCTATGGAAAGCTGACATTT | CAYSPAAGGTSYGKLTF | 181 | T |
seq92 | TRA | TRAV13-2 | null | TRAJ12 | TGTGCAGAGAATCTCGGGGATAGCAGCTATAAATTGATCTTC | CAENLGDSSYKLIF | 178 | T |
seq93 | TRA | TRAV19 | null | TRAJ33 | TGTGCTTCCAACCTTAAGGGGAGCAACTATCAGTTAATCTGG | CASNLKGSNYQLIW | 178 | T |
seq94 | TRA | TRAV19 | null | TRAJ22 | TGTGCTCTCGACTTTTCTTCTGGTTCTGCAAGGCAACTGACCTTT | CALDFSSGSARQLTF | 174 | T |
seq95 | TRA | TRAV27 | null | TRAJ22 | TGTGCAGGACAAGCCCCCTCTGGTTCTGCAAGGCAACTGACCTTT | CAGQAPSGSARQLTF | 171 | T |
seq96 | TRA | TRAV8-6 | null | TRAJ47 | TGTGCCGCCTGGGACATGGAATATGGAAACAAGCTGGTCTTT | CAAWDMEYGNKLVF | 168 | T |
seq97 | TRA | TRAV38-1 | null | TRAJ54 | TGTGCTTTCATGAGCTTAATTCAGGGAGCCCAGAAGCTGGTATTT | CAFMSLIQGAQKLVF | 165 | T |
seq98 | TRA | TRAV19 | null | TRAJ37 | TGTGCTCTGAGTGAGTTCTCTAGCAACACAGGCAAACTAATCTTT | CALSEFSSNTGKLIF | 164 | T |
seq99 | TRA | TRAV23DV6 | null | TRAJ31 | TGTGCAGCGACGGATAACAATGCCAGACTCATGTTT | CAATDNNARLMF | 161 | T |
seq100 | TRA | TRAV13-1 | null | TRAJ50 | TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT | CAATETSYDKVIF | 160 | T |
End of preview.
Benchmark datasets from various AIRR tools and algorithms, including, but not limited to
- VDJtools
- VDJdb
- ALICE
- TCRnet
- GLIPH/GLIPH2
- pyigmap
Note on some datasets used:
gliph/data comes from Glanville J, Huang H, Nau A, Hatton O, Wagar LE, Rubelt F, Ji X, Han A, Krams SM, Pettus C, Haas N, Arlehamn CSL, Sette A, Boyd SD, Scriba TJ, Martinez OM, Davis MM. Identifying specificity groups in the T cell receptor repertoire. Nature. 2017 Jul 6;547(7661):94-98. doi:10.1038/nature22976 and Huang H, Wang C, Rubelt F, Scriba TJ, Davis MM. Analyzing the Mycobacterium tuberculosis immune response by T-cell receptor clustering with GLIPH2 and genome-wide antigen screening. Nat Biotechnol. 2020 Oct;38(10):1194-1202. doi: 10.1038/s41587-020-0505-4.alice/mlrdata comes from Emerson RO, Mathew JM, Konieczna IM, Robins HS, Leventhal JR. Defining the alloreactive T cell repertoire using high-throughput sequencing of mixed lymphocyte reaction culture. PLoS One. 2014 Nov 3;9(11):e111943. doi: 10.1371/journal.pone.0111943dcode/data from 10X Genomicsvdjtools/SRR*data from Qi Q, Liu Y, Cheng Y, Glanville J, Zhang D, Lee JY, Olshen RA, Weyand CM, Boyd SD, Goronzy JJ. Diversity and clonal selection in the human T-cell repertoire. Proc Natl Acad Sci U S A. 2014 Sep 9;111(36):13139-44. doi: 10.1073/pnas.1409155111vdjtools/A*data from Britanova OV, Shugay M, Merzlyak EM, Staroverov DB, Putintseva EV, Turchaninova MA, Mamedov IZ, Pogorelyy MV, Bolotin DA, Izraelson M, Davydov AN, Egorov ES, Kasatskaya SA, Rebrikov DV, Lukyanov S, Chudakov DM. Dynamics of Individual T Cell Repertoires: From Cord Blood to Centenarians. J Immunol. 2016 Jun 15;196(12):5005-13. doi: 10.4049/jimmunol.1600005tcrnet/data from Emerson RO, DeWitt WS, Vignali M, Gravley J, Hu JK, Osborne EJ, Desmarais C, Klinger M, Carlson CS, Hansen JA, Rieder M, Robins HS. Immunosequencing identifies signatures of cytomegalovirus exposure history and HLA-mediated effects on the T cell repertoire. Nat Genet. 2017 May;49(5):659-665. doi: 10.1038/ng.3822
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