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Datasets:
isalgo
/
pmhc_data

Languages:
English
Size:
10M<n<100M
Tags:
immunology
immunopeptidomics
neoantigen
mhc
hla
t-cell
License:
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The dataset generation failed because of a cast error
Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 7 new columns ({'n', 'unit', 'context', 'abundance', 'key', 'key_type', 'source'}) and 5 missing columns ({'alias_kind', 'target_kind', 'target', 'provenance', 'alias'}).

This happened while the csv dataset builder was generating data using

gzip://protein_abundance_mmu.tsv::hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/expression/protein_abundance_mmu.tsv.gz, ['hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/expression/context_synonyms.tsv', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/expression/protein_abundance_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/expression/reference_expression.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/expression/reference_expression_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/expression/toil_floors.tsv', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/expression/toil_floors_mmu.tsv', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/expression/tumor_expression_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/hla_loh/do_to_tcga_barcode.tsv', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/icb_cohorts/harmonized/manifest.tsv', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/chowell_iedb_full.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/chowell_iedb_full_matched.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/chowell_rebuilt.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/chowell_rebuilt_hla_matched.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/hla_pop_freqs.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/iedb_labeled.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/immunogenicity_legacy_arms.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/kesmir_rebuilt.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/kesmir_rebuilt_hla_matched.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/neoag_tcell_balanced_mhc2_human.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/neoag_tcell_balanced_mhc2_mouse.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/pathogen_tcell_balanced_mhc1_human.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/pathogen_tcell_balanced_mhc1_mouse.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/pathogen_tcell_balanced_mhc2_human.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/pathogen_tcell_balanced_mhc2_mouse.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/pathogen_tcell_mhc1_human.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/pathogen_tcell_mhc1_mouse.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/pathogen_tcell_mhc2_human.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/pathogen_tcell_mhc2_mouse.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/cancer_targets_tsarina.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_adrenal_gland.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_aorta.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_bladder.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_bone_marrow.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_brain.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_cerebellum.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_colon.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_esophagus.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_gallbladder.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_heart.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_kidney.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_liver.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_lung.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_lymph_node.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mamma.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_match_presented_s20260918.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_match_presented_s20260919.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_match_presented_s20260920.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_match_thymus_s20260918.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_match_thymus_s20260919.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_match_thymus_s20260920.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_adrenal_gland.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_aorta.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_bladder.tsv.gz', 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'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_spleen.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_testis.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_thymus.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_thyroid.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_tongue.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_trachea.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_uterus.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/self_ligandome_mhc2_hsa.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/self_ligandome_mhc2_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/tissue_self_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/viral_foreign_iedb.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/viral_ligandome_mhc2_pan.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/viral_orfs_gse272406.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/cedar_neoag_mhc2_hsa.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/cedar_neoag_mhc2_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/nci_complete_minigenes.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/nci_gartner_mmp.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/nci_gartner_nmers.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/nci_gartner_samples.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/neoag_candidates.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/neoag_tested.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/neoag_tested_hsa.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/neoag_tested_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/neoantigens_tested_peptides.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/sahin_tnbc_2025.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/sahin_tnbc_2025_deg.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/sahin_tnbc_2025_drivers.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/sahin_tnbc_2025_gsea.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/pmhc/pmhc_full.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/pmhc/pmhc_shortlist.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/tcga/hla_coverage.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/tcga/tcga_neoantigens.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/thymus/thymus_expression.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/thymus/thymus_expression_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/thymus/thymus_immunopeptidome.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/thymus/thymus_immunopeptidome_mmu.tsv.gz']

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1848, in _prepare_split_single
                  writer.write_table(table)
                  ~~~~~~~~~~~~~~~~~~^^^^^^^
                File "/usr/local/lib/python3.14/site-packages/datasets/arrow_writer.py", line 765, in write_table
                  self._write_table(pa_table, writer_batch_size=writer_batch_size)
                  ~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.14/site-packages/datasets/arrow_writer.py", line 773, in _write_table
                  pa_table = table_cast(pa_table, self._schema)
                File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2378, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2306, in cast_table_to_schema
                  raise CastError(
                  ...<3 lines>...
                  )
              datasets.table.CastError: Couldn't cast
              key: string
              key_type: string
              source: string
              context: string
              abundance: double
              unit: string
              n: int64
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1055
              to
              {'alias': Value('string'), 'alias_kind': Value('string'), 'target_kind': Value('string'), 'target': Value('string'), 'provenance': Value('string')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1369, in compute_config_parquet_and_info_response
                  parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
                                                                        ~~~~~~~~~~~~~~~~~~~~~~~~~^
                      builder, max_dataset_size_bytes=max_dataset_size_bytes
                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                  )
                  ^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 948, in stream_convert_to_parquet
                  builder._prepare_split(split_generator=splits_generators[split], file_format="parquet")
                  ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1694, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^
                      gen_kwargs=gen_kwargs, job_id=job_id, **_prepare_split_args
                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                  ):
                  ^
                File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1850, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
                  ...<4 lines>...
                  )
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 7 new columns ({'n', 'unit', 'context', 'abundance', 'key', 'key_type', 'source'}) and 5 missing columns ({'alias_kind', 'target_kind', 'target', 'provenance', 'alias'}).
              
              This happened while the csv dataset builder was generating data using
              
              gzip://protein_abundance_mmu.tsv::hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/expression/protein_abundance_mmu.tsv.gz, ['hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/expression/context_synonyms.tsv', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/expression/protein_abundance_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/expression/reference_expression.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/expression/reference_expression_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/expression/toil_floors.tsv', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/expression/toil_floors_mmu.tsv', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/expression/tumor_expression_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/hla_loh/do_to_tcga_barcode.tsv', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/icb_cohorts/harmonized/manifest.tsv', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/chowell_iedb_full.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/chowell_iedb_full_matched.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/chowell_rebuilt.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/chowell_rebuilt_hla_matched.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/hla_pop_freqs.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/iedb_labeled.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/immunogenicity_legacy_arms.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/kesmir_rebuilt.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/kesmir_rebuilt_hla_matched.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/neoag_tcell_balanced_mhc2_human.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/neoag_tcell_balanced_mhc2_mouse.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/pathogen_tcell_balanced_mhc1_human.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/pathogen_tcell_balanced_mhc1_mouse.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/pathogen_tcell_balanced_mhc2_human.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/pathogen_tcell_balanced_mhc2_mouse.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/pathogen_tcell_mhc1_human.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/pathogen_tcell_mhc1_mouse.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/pathogen_tcell_mhc2_human.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/immunogenicity/pathogen_tcell_mhc2_mouse.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/cancer_targets_tsarina.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_adrenal_gland.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_aorta.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_bladder.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_bone_marrow.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_brain.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_cerebellum.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_colon.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_esophagus.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_gallbladder.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_heart.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_kidney.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_liver.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_lung.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_lymph_node.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mamma.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_match_presented_s20260918.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_match_presented_s20260919.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_match_presented_s20260920.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_match_thymus_s20260918.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_match_thymus_s20260919.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_match_thymus_s20260920.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_adrenal_gland.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_aorta.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_bladder.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_bone_marrow.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_brain.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_cerebellum.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_colon.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_esophagus.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_gallbladder.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_heart.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_kidney.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_liver.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_lung.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_lymph_node.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_mamma.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_muscle.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_myelon.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_ovary.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_pancreas.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_presented.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_presented_nothymus.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_presented_xthymus.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_prostate.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_skin.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_small_intestine.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_spleen.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_testis.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_thymus.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_thyroid.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_tongue.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_trachea.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_mhc2_uterus.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_muscle.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_myelon.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_ovary.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_pancreas.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_presented.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_presented_nothymus.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_presented_xthymus.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_prostate.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_skin.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_small_intestine.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_spleen.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_testis.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_thymus.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_thyroid.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_tongue.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_trachea.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/hla_ligand_atlas_uterus.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/self_ligandome_mhc2_hsa.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/self_ligandome_mhc2_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/tissue_self_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/viral_foreign_iedb.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/viral_ligandome_mhc2_pan.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/ligandome/viral_orfs_gse272406.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/cedar_neoag_mhc2_hsa.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/cedar_neoag_mhc2_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/nci_complete_minigenes.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/nci_gartner_mmp.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/nci_gartner_nmers.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/nci_gartner_samples.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/neoag_candidates.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/neoag_tested.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/neoag_tested_hsa.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/neoag_tested_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/neoantigens_tested_peptides.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/sahin_tnbc_2025.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/sahin_tnbc_2025_deg.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/sahin_tnbc_2025_drivers.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/neoantigens/sahin_tnbc_2025_gsea.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/pmhc/pmhc_full.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/pmhc/pmhc_shortlist.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/tcga/hla_coverage.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/tcga/tcga_neoantigens.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/thymus/thymus_expression.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/thymus/thymus_expression_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/thymus/thymus_immunopeptidome.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2a7a0eddd40bd2b59d687c9c720ec2efe0ef909f/thymus/thymus_immunopeptidome_mmu.tsv.gz']
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)

Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.

alias
string
alias_kind
string
target_kind
string
target
string
provenance
string
ACC
code
gtex_context
Adrenal Gland
curated:TUMOR_TISSUE
ACC
code
tcga_code
ACC
derived:toil_matrix
Acute Myeloid Leukemia
disease
gtex_context
Whole Blood
curated:TUMOR_TISSUE
Acute Myeloid Leukemia
disease
tcga_code
LAML
derived:xena_detailed_category
Adipose - Subcutaneous
gtex
gtex_context
Adipose - Subcutaneous
derived:toil_matrix
Adipose - Visceral (Omentum)
gtex
gtex_context
Adipose - Visceral (Omentum)
derived:toil_matrix
Adrenal Gland
gtex
gtex_context
Adrenal Gland
derived:toil_matrix
Adrenal gland
site
gtex_context
Adrenal Gland
curated:TUMOR_TISSUE
Adrenal gland
site
tcga_code
ACC
derived:xena_primary_site
Adrenocortical Cancer
disease
gtex_context
Adrenal Gland
curated:TUMOR_TISSUE
Adrenocortical Cancer
disease
tcga_code
ACC
derived:xena_detailed_category
Artery - Aorta
gtex
gtex_context
Artery - Aorta
derived:toil_matrix
Artery - Coronary
gtex
gtex_context
Artery - Coronary
derived:toil_matrix
Artery - Tibial
gtex
gtex_context
Artery - Tibial
derived:toil_matrix
BLCA
code
gtex_context
Bladder
curated:TUMOR_TISSUE
BLCA
code
tcga_code
BLCA
derived:toil_matrix
BRCA
code
gtex_context
Breast - Mammary Tissue
curated:TUMOR_TISSUE
BRCA
code
tcga_code
BRCA
derived:toil_matrix
Bile duct
site
gtex_context
Liver
curated:TUMOR_TISSUE
Bile duct
site
tcga_code
CHOL
derived:xena_primary_site
Bladder
gtex
gtex_context
Bladder
derived:toil_matrix
Bladder
site
gtex_context
Bladder
curated:TUMOR_TISSUE
Bladder
site
tcga_code
BLCA
derived:xena_primary_site
Bladder Urothelial Carcinoma
disease
gtex_context
Bladder
curated:TUMOR_TISSUE
Bladder Urothelial Carcinoma
disease
tcga_code
BLCA
derived:xena_detailed_category
Brain
site
gtex_context
Brain - Amygdala
curated:TUMOR_TISSUE
Brain
site
gtex_context
Brain - Anterior Cingulate Cortex (Ba24)
curated:TUMOR_TISSUE
Brain
site
gtex_context
Brain - Caudate (Basal Ganglia)
curated:TUMOR_TISSUE
Brain
site
gtex_context
Brain - Cerebellar Hemisphere
curated:TUMOR_TISSUE
Brain
site
gtex_context
Brain - Cerebellum
curated:TUMOR_TISSUE
Brain
site
gtex_context
Brain - Cortex
curated:TUMOR_TISSUE
Brain
site
gtex_context
Brain - Frontal Cortex (Ba9)
curated:TUMOR_TISSUE
Brain
site
gtex_context
Brain - Hippocampus
curated:TUMOR_TISSUE
Brain
site
gtex_context
Brain - Hypothalamus
curated:TUMOR_TISSUE
Brain
site
gtex_context
Brain - Nucleus Accumbens (Basal Ganglia)
curated:TUMOR_TISSUE
Brain
site
gtex_context
Brain - Putamen (Basal Ganglia)
curated:TUMOR_TISSUE
Brain
site
gtex_context
Brain - Spinal Cord (Cervical C-1)
curated:TUMOR_TISSUE
Brain
site
gtex_context
Brain - Substantia Nigra
curated:TUMOR_TISSUE
Brain
site
tcga_code
GBM
derived:xena_primary_site
Brain
site
tcga_code
LGG
derived:xena_primary_site
Brain - Amygdala
gtex
gtex_context
Brain - Amygdala
derived:toil_matrix
Brain - Anterior Cingulate Cortex (Ba24)
gtex
gtex_context
Brain - Anterior Cingulate Cortex (Ba24)
derived:toil_matrix
Brain - Caudate (Basal Ganglia)
gtex
gtex_context
Brain - Caudate (Basal Ganglia)
derived:toil_matrix
Brain - Cerebellar Hemisphere
gtex
gtex_context
Brain - Cerebellar Hemisphere
derived:toil_matrix
Brain - Cerebellum
gtex
gtex_context
Brain - Cerebellum
derived:toil_matrix
Brain - Cortex
gtex
gtex_context
Brain - Cortex
derived:toil_matrix
Brain - Frontal Cortex (Ba9)
gtex
gtex_context
Brain - Frontal Cortex (Ba9)
derived:toil_matrix
Brain - Hippocampus
gtex
gtex_context
Brain - Hippocampus
derived:toil_matrix
Brain - Hypothalamus
gtex
gtex_context
Brain - Hypothalamus
derived:toil_matrix
Brain - Nucleus Accumbens (Basal Ganglia)
gtex
gtex_context
Brain - Nucleus Accumbens (Basal Ganglia)
derived:toil_matrix
Brain - Putamen (Basal Ganglia)
gtex
gtex_context
Brain - Putamen (Basal Ganglia)
derived:toil_matrix
Brain - Spinal Cord (Cervical C-1)
gtex
gtex_context
Brain - Spinal Cord (Cervical C-1)
derived:toil_matrix
Brain - Substantia Nigra
gtex
gtex_context
Brain - Substantia Nigra
derived:toil_matrix
Brain Lower Grade Glioma
disease
gtex_context
Brain - Amygdala
curated:TUMOR_TISSUE
Brain Lower Grade Glioma
disease
gtex_context
Brain - Anterior Cingulate Cortex (Ba24)
curated:TUMOR_TISSUE
Brain Lower Grade Glioma
disease
gtex_context
Brain - Caudate (Basal Ganglia)
curated:TUMOR_TISSUE
Brain Lower Grade Glioma
disease
gtex_context
Brain - Cerebellar Hemisphere
curated:TUMOR_TISSUE
Brain Lower Grade Glioma
disease
gtex_context
Brain - Cerebellum
curated:TUMOR_TISSUE
Brain Lower Grade Glioma
disease
gtex_context
Brain - Cortex
curated:TUMOR_TISSUE
Brain Lower Grade Glioma
disease
gtex_context
Brain - Frontal Cortex (Ba9)
curated:TUMOR_TISSUE
Brain Lower Grade Glioma
disease
gtex_context
Brain - Hippocampus
curated:TUMOR_TISSUE
Brain Lower Grade Glioma
disease
gtex_context
Brain - Hypothalamus
curated:TUMOR_TISSUE
Brain Lower Grade Glioma
disease
gtex_context
Brain - Nucleus Accumbens (Basal Ganglia)
curated:TUMOR_TISSUE
Brain Lower Grade Glioma
disease
gtex_context
Brain - Putamen (Basal Ganglia)
curated:TUMOR_TISSUE
Brain Lower Grade Glioma
disease
gtex_context
Brain - Spinal Cord (Cervical C-1)
curated:TUMOR_TISSUE
Brain Lower Grade Glioma
disease
gtex_context
Brain - Substantia Nigra
curated:TUMOR_TISSUE
Brain Lower Grade Glioma
disease
tcga_code
LGG
derived:xena_detailed_category
Breast
site
gtex_context
Breast - Mammary Tissue
curated:TUMOR_TISSUE
Breast
site
tcga_code
BRCA
derived:xena_primary_site
Breast - Mammary Tissue
gtex
gtex_context
Breast - Mammary Tissue
derived:toil_matrix
Breast Invasive Carcinoma
disease
gtex_context
Breast - Mammary Tissue
curated:TUMOR_TISSUE
Breast Invasive Carcinoma
disease
tcga_code
BRCA
derived:xena_detailed_category
CESC
code
gtex_context
Cervix - Ectocervix
curated:TUMOR_TISSUE
CESC
code
tcga_code
CESC
derived:toil_matrix
CHOL
code
gtex_context
Liver
curated:TUMOR_TISSUE
CHOL
code
tcga_code
CHOL
derived:toil_matrix
COAD
code
gtex_context
Colon - Sigmoid
curated:TUMOR_TISSUE
COAD
code
gtex_context
Colon - Transverse
curated:TUMOR_TISSUE
COAD
code
tcga_code
COAD
derived:toil_matrix
Cells - Ebv-Transformed Lymphocytes
gtex
gtex_context
Cells - Ebv-Transformed Lymphocytes
derived:toil_matrix
Cells - Leukemia Cell Line (Cml)
gtex
gtex_context
Cells - Leukemia Cell Line (Cml)
derived:toil_matrix
Cells - Transformed Fibroblasts
gtex
gtex_context
Cells - Transformed Fibroblasts
derived:toil_matrix
Cervical & Endocervical Cancer
disease
gtex_context
Cervix - Ectocervix
curated:TUMOR_TISSUE
Cervical & Endocervical Cancer
disease
tcga_code
CESC
derived:xena_detailed_category
Cervix
site
gtex_context
Cervix - Ectocervix
curated:TUMOR_TISSUE
Cervix
site
tcga_code
CESC
derived:xena_primary_site
Cervix - Ectocervix
gtex
gtex_context
Cervix - Ectocervix
derived:toil_matrix
Cholangiocarcinoma
disease
gtex_context
Liver
curated:TUMOR_TISSUE
Cholangiocarcinoma
disease
tcga_code
CHOL
derived:xena_detailed_category
Colon
site
gtex_context
Colon - Sigmoid
curated:TUMOR_TISSUE
Colon
site
gtex_context
Colon - Transverse
curated:TUMOR_TISSUE
Colon
site
tcga_code
COAD
derived:xena_primary_site
Colon - Sigmoid
gtex
gtex_context
Colon - Sigmoid
derived:toil_matrix
Colon - Transverse
gtex
gtex_context
Colon - Transverse
derived:toil_matrix
Colon Adenocarcinoma
disease
gtex_context
Colon - Sigmoid
curated:TUMOR_TISSUE
Colon Adenocarcinoma
disease
gtex_context
Colon - Transverse
curated:TUMOR_TISSUE
Colon Adenocarcinoma
disease
tcga_code
COAD
derived:xena_detailed_category
DLBC
code
gtex_context
Spleen
curated:TUMOR_TISSUE
DLBC
code
gtex_context
Whole Blood
curated:TUMOR_TISSUE
DLBC
code
tcga_code
DLBC
derived:toil_matrix
End of preview.

pMHC Data Compendium

Harmonized peptide–MHC data for neoantigen scoring: presentation, immunogenicity labels, self/foreign reference peptidomes, expression, and clinical-outcome cohorts. Human and mouse.

Every table here is derived from public sources. Per-file provenance, filtering rules, verified PubMed citations and row-level audits live in the SOURCES.md of each directory — that is the authoritative record, not this page.

Contents

Directory What is in it
pmhc/ Epitope–MHC binding records — the presentation panel (pmhc_full, and pmhc_shortlist at ≥2 references)
immunogenicity/ T-cell immunogenicity corpora: immunogenic vs self ligands and vs non-self, each with an HLA-matched variant; labelled set; HLA population frequencies
neoantigens/ Tested and candidate neoantigens — minigene, epitope-level and per-mutation screens, human and mouse
ligandome/ Foreign and tissue reference peptidomes — viral ligands, pan-viral ORFs, cancer-testis targets, per-tissue corpora
thymus/ Thymic self-peptidome and thymic expression, human and mouse — the central-tolerance reference
expression/ Reference expression, human and mouse, plus a single-pipeline table and mouse protein abundance
proteome/ Human and mouse reference proteomes plus 16 bacterial/viral proteomes for mimicry scans
homology/ Cross-species homology mappings
tcga/ Expressed mutant-peptide–HLA binders across 8,505 donors
hla_loh/ HLA-I loss of heterozygosity and genetic immune escape over 6,319 tumours, with three-caller typing concordance
icb_cohorts/ Harmonized checkpoint-blockade cohorts with outcome
vaccines/ Shipped personalized-vaccine cassettes and their immune monitoring

Formats are mixed by design: gzipped TSV for the large harmonized tables, parquet where the schema is wide or typed, .npz for dense matrices, gzipped FASTA for proteomes.

Shared schema

The immunogenicity tables share one schema:

peptide, mhc_a, mhc_b, mhc_class, mhc_species, source_species, host_species,
assay_type, immunogenicity{1,0,null}, expression, affinity, affinity_wt,
agretopicity, foreignness, validated, dataset_origin, reference_id, n_references

plus patient_id, cancer_type on the neoantigen tables. Canonical columns hold as-reported values only; anything predicted lives in a pred_* column, so affinity is always experimental. affinity units differ by source and MHC alleles are as-reported.

Two things to know before filtering

  • neoantigens/neoag_tested.tsv.gz contains mouse rows labelled as human. 6,186 CEDAR rows carry mouse MHC alleles (H2-Db 1,020, H2-Kb 932, H2-b class I 719, H2-Kd 525, H2-d class II 505, …) while their mhc_species reads HomoSapiens and host_species reads human. SIINFEKL, the canonical H-2Kb ovalbumin epitope, is among them. Filtering that table on mhc_species therefore silently admits mouse pMHC. The defect is upstream and is left unfixed; neoantigens/neoag_tested_mmu.tsv.gz is the correctly-labelled murine set.
  • neoag_tested_{mmu,hsa} overlap neoag_tested.tsv.gz by design — all 2,273 peptides appear in both, since both are IEDB-derived. Dedupe on peptide × MHC when joining.

Loading 

from huggingface_hub import hf_hub_download
import pandas as pd

path = hf_hub_download("isalgo/pmhc_data", "pmhc/pmhc_shortlist.tsv.gz", repo_type="dataset")
df = pd.read_csv(path, sep="\t")

Grab one directory rather than the whole repo:

hf download isalgo/pmhc_data --repo-type dataset --include "neoantigens/*" --local-dir ./pmhc_data

mhcmatch consumes this compendium directly — mhcmatch bootstrap stages the panel and reference tables from here.

Upstream sources

Which table came from which, and under what filtering, is in the SOURCES.md of each directory.

IEDB https://www.iedb.org
CEDAR https://cedar.iedb.org
HLA Ligand Atlas https://hla-ligand-atlas.org
UniProt https://www.uniprot.org
GTEx https://gtexportal.org
Human Protein Atlas https://www.proteinatlas.org
FANTOM5 https://fantom.gsc.riken.jp/5/
UCSC Xena https://xenabrowser.net
GDC / TCGA https://portal.gdc.cancer.gov
ICGC / PCAWG https://dcc.icgc.org
Hartwig Medical Foundation https://www.hartwigmedicalfoundation.nl
Allele Frequency Net Database https://www.allelefrequencies.net
PRIDE https://www.ebi.ac.uk/pride/
MassIVE https://massive.ucsd.edu
GEO https://www.ncbi.nlm.nih.gov/geo/

Licensing

Each upstream source carries its own terms; this compendium redistributes derived, harmonized tables and does not relicense them. Check the SOURCES.md of the directory you are using before redistributing, and cite the primary publications recorded there rather than this repository.
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