Commit History

Add NCI complete neoantigen screen (iScience 2022 S6) as an immunogenicity variant
5bf4fce

mikessh commited on

DESCRIPTION: document neoag_tested_{mmu,hsa} + flag 6186 mouse CEDAR rows mislabelled as human
caae2e8
verified

mikessh commited on

Add neoag_tested_hsa: 717 HLA-restricted rows from the same IEDB mouse export (HLA-Tg mice + human hosts)
95d8d4b
verified

mikessh commited on

Add neoag_tested_mmu: 1977 murine tested neo-epitopes from IEDB (mhc_species=MusMusculus)
8cff104
verified

mikessh commited on

Publish TCGA neoantigens; add data-catalog infographic
16b4d49

mikessh Claude Opus 4.8 commited on

thymus: add human thymic self-peptidome (source #1 refill)
dd356be

mikessh Claude Opus 4.8 commited on

data(proteome): add 16 bacterial + viral reference proteomes
f41cb71

mikessh Claude Opus 4.8 commited on

neoag: primary datasets take precedence over CEDAR/Neopep; trim blank cols from iedb_labeled
00ea153

mikessh Claude Opus 4.8 commited on

DESCRIPTION: label iedb_labeled as the ipred training set (#7)
c96db3d

mikessh Claude Opus 4.8 commited on

Rework #9 into workhorse neoag DB (tested + candidates) + HLA population freqs
89a5bee

mikessh Claude Opus 4.8 commited on

Add v1 data compendium: immunogenicity labels/benchmarks + similarity references
1ebb8a6

mikessh Claude Opus 4.8 commited on

Add pMHC dataset: epitope-MHC binding from IEDB
9a81417

Mikhail Shugay commited on

initial commit
baf1512
verified

mikessh commited on