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"""
Support code for 0alias scripts.
@since: 0.28
"""
# Copyright (C) 2009, Thomas Leonard
# See the README file for details, or visit http://0install.net.
from zeroinstall import _, SafeException
from zeroinstall import support
_old_template = '''#!/bin/sh
if [ "$*" = "--versions" ]; then
exec 0launch -gd '%s' "$... | timdiels/0install | zeroinstall/alias.py | Python | lgpl-2.1 | 3,119 | [
"VisIt"
] | a97ec23db4adde1c5803f902b5bbcb78a3536b1072db4721810391225301bc7e |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Author: Beining --<ACICFG>
# Purpose: Yet another danmaku and video file downloader of Bilibili.
# Created: 11/06/2013
#
# Biligrab is licensed under MIT license (https://github.com/cnbeining/Biligrab/blob/master/LICENSE)
#
# Copyright (c) 2013-2015
'''
Biligrab
Beinin... | cnbeining/Biligrab | biligrab.py | Python | mit | 60,115 | [
"VisIt"
] | 71d9a61a3dcf3c03f5d48f92e2c0c9b522a9666e7974b843e94ca7b692f380bf |
import logging
import os
import re
import copy
import time
from argparse import ArgumentParser, RawTextHelpFormatter, SUPPRESS
from datetime import datetime
import os
from Top import Top
log = logging.getLogger(__name__)
# noinspection PyShadowingNames
class Settings(Top):
"""
Parses settings in the followin... | talipovm/terse | terse/Settings.py | Python | mit | 18,566 | [
"Firefly",
"GAMESS",
"Gaussian",
"Jmol"
] | ccdb7543da05d748c29d4a4b79c9adc52a1f144136de217b6e1263011ab29366 |
# $Id: __init__.py 5574 2008-06-23 09:16:39Z grubert $
# Author: Engelbert Gruber <grubert@users.sourceforge.net>
# Copyright: This module has been placed in the public domain.
"""
LaTeX2e document tree Writer.
"""
__docformat__ = 'reStructuredText'
# code contributions from several people included, thanks to all.
#... | creasyw/IMTAphy | documentation/toolchain/docutils-0.5-py2.5.egg/docutils/writers/latex2e/__init__.py | Python | gpl-2.0 | 83,484 | [
"VisIt"
] | 1802a44a579f209fcea8af72d88c994c64fd3c689a9bce42c9d0998ef8d58fa5 |
import sys
sys.path.insert(1,"../../../")
import h2o
from tests import pyunit_utils
def pyunit_make_glm_model():
# TODO: PUBDEV-1717
pros = h2o.import_file(pyunit_utils.locate("smalldata/prostate/prostate.csv"))
model = h2o.glm(x=pros[["AGE","DPROS","DCAPS","PSA","VOL","GLEASON"]], y=pros["CAPSULE"], fa... | pchmieli/h2o-3 | h2o-py/tests/testdir_algos/glm/pyunit_NOFEATURE_make_glm_model.py | Python | apache-2.0 | 869 | [
"Gaussian"
] | 3c854020a4f14cfab16cb1026861f8ae70adba7d1195ea45865cbca501452442 |
"""
stats.py
This file contains functions for reporting results from EM and assembly steps
and raw numbers for visualization with another tool.
Sam Vohr (svohr@soe.ucsc.edu)
Fri May 20 14:04:02 PDT 2016
"""
import sys
import collections
import numpy
from mixemt import observe
from mixemt import phylotree
def rep... | svohr/mixemt | mixemt/stats.py | Python | mit | 6,570 | [
"pysam"
] | 7571257aae70b50b3050cfcc9e40e44e83daebef6b0c8136b0336889b64d67fd |
"""testGame_modular_animation.py;
-Warning, code probably isn't structured very well, needs cleaned up.
-Still lots of hardcoded numbers/file paths, no clue if this will work on
any system that's not GNU/Linux.
-If you want to run it, please remember to mess with the filepaths around
line 95, I should change them t... | ryancnap/sadsack-rpg | my-game.py | Python | gpl-2.0 | 10,192 | [
"exciting"
] | 086f6b084878e6b253defce228a928fe98f411229d7c751b765904ed2dc989f7 |
# -*- coding: utf-8 -*-
from south.utils import datetime_utils as datetime
from south.db import db
from south.v2 import SchemaMigration
from django.db import models
class Migration(SchemaMigration):
def forwards(self, orm):
# Adding field 'Patient.serial'
db.add_column(u'clinics_patient', 'serial... | myvoice-nigeria/myvoice | myvoice/clinics/migrations/0009_auto__add_field_patient_serial__add_field_clinic_code.py | Python | bsd-2-clause | 12,250 | [
"VisIt"
] | e303ed89700776efdcd5032d2bf9866ccb4ec02b1216d3ef1581fa39682fd33f |
""" Palette is a tool to generate colors for various Graphs plots and legends
The DIRAC Graphs package is derived from the GraphTool plotting package of the
CMS/Phedex Project by ... <to be added>
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
... | ic-hep/DIRAC | src/DIRAC/Core/Utilities/Graphs/Palette.py | Python | gpl-3.0 | 3,155 | [
"DIRAC"
] | 34a78bf425b26416952edeb0e0d093ad0d65f308b97ebab264bd82970d2e58c3 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Localization Compiler
#
import os, sys, codecs, shutil
from xml.dom.minidom import parse
template_dir = os.path.abspath(os.path.dirname(sys._getframe(0).f_code.co_filename))
sys.path.append(os.path.join(template_dir,'../'))
from tiapp import *
ignoreFiles = ['.gitig... | arnaudsj/titanium_mobile | support/common/localecompiler.py | Python | apache-2.0 | 5,110 | [
"VisIt"
] | 319298d11383871204e2f0932230ad319f137e5bc5a14a9e745807c8a533b61a |
import os
import pylab
import numpy as np
from math import sqrt
from LinearAlgebra import solve_linear_equations as solve
from gpaw.testing.atomization_data import atomization_vasp
from gpaw.utilities import fix, fix2
from moleculetest import dd
from gpaw.testing.data import Ea12
def main(molecules, moleculedata, res... | qsnake/gpaw | scripts/data2restructured.py | Python | gpl-3.0 | 5,990 | [
"GPAW"
] | 2bb4652bad1bd4b1cec97c41792069f0ca426c038788a4a484acb4b06d791757 |
#!/usr/bin/env python
from PIL import Image
import numpy as np
from scipy.ndimage.interpolation import rotate
from scipy.ndimage import gaussian_filter
import argparse
import os
from TiffWriter import write_tiff
def crop_center(img, new_shape):
"""
Crop an image equally on each size to create the new_shape
... | ClayFlannigan/halftone | halftone.py | Python | apache-2.0 | 9,337 | [
"Gaussian"
] | 4dc4b9ee9dd095b7a809ce9b21b9ae5b1898f55552a00c4752345a70ce5ada70 |
# Merge active and previous version's generated next major version candidate
# shadow. This involve simultaneously traversing both FileDescriptorProtos and:
# 1. Recovering hidden_envoy_depreacted_* fields and enum values in active proto.
# 2. Recovering deprecated (sub)message types.
# 3. Misc. fixups for oneof metada... | istio/envoy | tools/protoxform/merge_active_shadow.py | Python | apache-2.0 | 6,516 | [
"VisIt"
] | dc43ee9873c70cb9b661c4b127401f7042d458f11d13e58e1eef8c025cf57aab |
# -*- coding: utf-8 -*-
{
'"update" is an optional expression like "field1=\'newvalue\'". You cannot update or delete the results of a JOIN': '"update" je opcioni izraz kao sto je "polje1=\'nova vrijednost\'". Ne mozete azurirati ili izbristi rezultati JOIN-a',
'# of Houses Damaged': 'Broj oštećenih kuća',
'# of Houses... | devinbalkind/eden | languages/bs.py | Python | mit | 538,172 | [
"VisIt"
] | 53424b02d0abbd85a65f2eaaaaef896b7e859688aba104200880d836e32a0860 |
################################################################################
# Copyright (C) 2015 Jaakko Luttinen
#
# This file is licensed under the MIT License.
################################################################################
"""
Unit tests for `gamma` module.
"""
import numpy as np
from scipy... | bayespy/bayespy | bayespy/inference/vmp/nodes/tests/test_gamma.py | Python | mit | 6,897 | [
"Gaussian"
] | f58c3f750e9df37f25c94670fca0f770c1928efdd56d8a4d3326e7a7a7bd01ab |
# Copyright 2009 Brian Quinlan. All Rights Reserved.
# Licensed to PSF under a Contributor Agreement.
"""Implements ProcessPoolExecutor.
The follow diagram and text describe the data-flow through the system:
|======================= In-process =====================|== Out-of-process ==|
+----------+ +-... | edmundgentle/schoolscript | SchoolScript/bin/Debug/pythonlib/Lib/concurrent/futures/process.py | Python | gpl-2.0 | 15,316 | [
"Brian"
] | f3ff94a128d107c4575db7814756601aeecdfff1616a72a8083bc4c84dfb75e6 |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2005-2014 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU Lesser General Public License as published by
## the Free Softw... | andrebellafronte/stoq | stoqlib/domain/sale.py | Python | gpl-2.0 | 86,939 | [
"VisIt"
] | 7cb370625b267198d2cae275aa86c324415aed897aa2b2c79b20908cd2efbe5a |
import numpy as np
import tensorflow as tf
import tensorflow.contrib.slim as slim
from tensorflow.contrib.layers.python import layers as tf_layers
from models.conv_lstm import basic_conv_lstm_cell, conv_lstm_cell_no_input
# Amount to use when lower bounding tensors
RELU_SHIFT = 1e-12
FC_LAYER_SIZE = 256
FC_LSTM_LAYER... | jonasrothfuss/DeepEpisodicMemory | models/model_zoo/model_conv5_fc_lstm2_128.py | Python | mit | 9,772 | [
"Gaussian"
] | 6cb3d4b3822b8903fe7faa09594110480dd710c9b3b5bbca2a84e97747db72b7 |
# Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | aakashsinha19/Aspectus | Image Classification/models/differential_privacy/multiple_teachers/deep_cnn.py | Python | apache-2.0 | 21,830 | [
"Gaussian"
] | 9765483f7e3a0398f7ed9eabe55ca90f5ca79990bed9be715679066dc63c2f2e |
import sys
tests = [
("testExecs/testFeatures.exe", "", {}),
("python", "test_list.py", {'dir': 'Wrap'}),
]
longTests = []
if __name__ == '__main__':
import sys
from rdkit import TestRunner
failed, tests = TestRunner.RunScript('test_list.py', 0, 1)
sys.exit(len(failed))
| jandom/rdkit | Code/GraphMol/MolChemicalFeatures/test_list.py | Python | bsd-3-clause | 286 | [
"RDKit"
] | b3d514d50c5fc27a479630b8c52686ec503f3c2e799a8ba6e4a3af745a133db9 |
from __future__ import (absolute_import, division, print_function)
# pylint: disable=no-init,invalid-name,too-few-public-methods,unused-import
from mantid.kernel import *
from mantid.simpleapi import *
from mantid.api import *
from mantid.geometry import *
import os
class PoldiCompound(object):
"""Small helper ... | dymkowsk/mantid | Framework/PythonInterface/plugins/algorithms/PoldiCreatePeaksFromFile.py | Python | gpl-3.0 | 8,311 | [
"CRYSTAL"
] | 112188c14351cce75e9c826f1aece2ab3e06e76909138929791c8acdc61086d7 |
# Name: mapper_hirlam2nc.py
# Purpose: Mapper for Hirlam wind data converted from felt to netCDF
# Authors: Knut-Frode Dagestad
# Licence: This file is part of NANSAT. You can redistribute it or modify
# under the terms of GNU General Public License, v.3
# http://www.g... | nansencenter/nansat | nansat/mappers/mapper_hirlam_wind_netcdf.py | Python | gpl-3.0 | 4,217 | [
"NetCDF"
] | e44459220e232e256fc6cf339b32b6e0d43864d3a7945fac6b28f95604c1c7f0 |
import numpy as np
import scipy.stats
import galsim
def render(model,scale,size=None,stamp=None):
"""
Returns a rendering of the specified GalSim model into a square postage stamp with the
specified pixel scale (arcsecs). Either a stamp pixel size or an existing stamp (with its
scale attribute set) mus... | deepzot/bashes | bashes/utility.py | Python | mit | 2,652 | [
"Gaussian"
] | 1b106e26cf8a1c9bda42451552ca0b79d132f7651524364187014e26ed202dbb |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2018 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | amjames/psi4 | psi4/share/psi4/databases/HTR40.py | Python | lgpl-3.0 | 41,501 | [
"Psi4"
] | 7821b04e2d2537c333403dfd90236d498774c51eb373c4fab535b0e8f1c0d734 |
#!/usr/bin/env python
__author__ = "Greg Caporaso"
__copyright__ = "Copyright 2011, The QIIME Project"
__credits__ = [
"Rob Knight",
"Greg Caporaso",
"Jeremy Widmann",
"Kyle Bittinger"]
__license__ = "GPL"
__version__ = "1.9.1-dev"
__maintainer__ = "Greg Caporaso"
__email__ = "gregcaporaso@gmail.com"
... | squirrelo/qiime | qiime/align_seqs.py | Python | gpl-2.0 | 11,369 | [
"BLAST"
] | e648f2e960bae90ab77d6d748e7c079c9b8db89acaad5e4e392fce25546f074d |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2003-2006 Donald N. Allingham
# Copyright (C) 2007-2008 Brian G. Matherly
# Copyright (C) 2010 Jakim Friant
# Copyright (C) 2012 Paul Franklin, Nicolas Adenis-Lamarre, Benny Malengier
#
# This program is free software; you can redistribute it... | arunkgupta/gramps | gramps/plugins/drawreport/fanchart.py | Python | gpl-2.0 | 31,716 | [
"Brian"
] | 10c13a6d6e47830a4ea3888284726088c8a3ecf91faa3c20a94f374ddb2f0454 |
from __future__ import print_function
import sys
import os
import copy
import random
sys.path.insert(1, os.path.join("..","..",".."))
import h2o
from tests import pyunit_utils
from h2o.grid.grid_search import H2OGridSearch
from h2o.estimators.deeplearning import H2ODeepLearningEstimator
def deeplearning_grid_cars():
... | mathemage/h2o-3 | h2o-py/tests/testdir_algos/deeplearning/pyunit_grid_cars_deeplearning.py | Python | apache-2.0 | 4,115 | [
"Gaussian"
] | 985f24e8c8920e4e67d39adaee3fde216d09bafab03bdc4ece52771c5aa000f0 |
################################################################################
# The Neural Network (NN) based Speech Synthesis System
# https://github.com/CSTR-Edinburgh/merlin
#
# Centre for Speech Technology Research
# University of Edinburgh, UK
# ... | bajibabu/merlin | src/run_merlin.py | Python | apache-2.0 | 60,558 | [
"NEURON"
] | 552119ae90ff4089aebc1a389544d424417821c7838e89b6350bdedbeb749394 |
from ase import Atoms
from gpaw import GPAW
from gpaw.test import equal
from ase.units import Bohr, Hartree
a = 7.5 * Bohr
n = 16
atoms = Atoms('He', [(0.0, 0.0, 0.0)], cell=(a, a, a), pbc=True)
calc = GPAW(gpts=(n, n, n), nbands=1, xc='PBE')
atoms.set_calculator(calc)
e1 = atoms.get_potential_energy()
niter1 = calc.g... | qsnake/gpaw | gpaw/test/revPBE.py | Python | gpl-3.0 | 803 | [
"ASE",
"GPAW"
] | a517bd6198c278752f96c8acf3aaa9b9567552c69a35d99d806f5e3f29ad190c |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2012 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Software Foundati... | andrebellafronte/stoq | stoqlib/gui/test/test_taxclasssearch.py | Python | gpl-2.0 | 1,600 | [
"VisIt"
] | 7a0ee14975250e1177dacc999d8a145bb379842b3a0cdf5de450041238b62cb8 |
# LAMMPS Documentation Utilities
#
# Copyright (C) 2015 Richard Berger
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.... | zimmermant/dlvo_lammps | doc/utils/converters/lammpsdoc/lammps_filters.py | Python | gpl-2.0 | 3,497 | [
"LAMMPS"
] | bc7d1d3f20d4aa876e63efc96e3c0a8902934229b0ac2aeac558512643a4d214 |
import numpy
import pylab
import os
#TODO change directory
path = "/home/alex/GitHub/NEUCOGAR/nest/dopamine/test_results/test400_8/"
dpi_n = 120
def spike_make_diagram(ts, gids, name, title, hist):
pylab.figure()
color_marker = "."
color_bar = "blue"
color_edge = "black"
ylabel = "Neuron ID"
... | vitaliykomarov/NEUCOGAR | nest/common_scripts/build_diagram.py | Python | gpl-2.0 | 3,299 | [
"NEURON"
] | a131138438c5a26cd184627a5c8a642437eb1fcb7de70435ec365b155992820f |
# Copyright 2004 by Frank Kauff. All rights reserved.
# Revisions copyright 2008-2013 by Peter Cock. All rights reserved.
# Revisions copyright 2009-2009 by Michiel de Hoon. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should ha... | updownlife/multipleK | dependencies/biopython-1.65/Tests/test_Ace.py | Python | gpl-2.0 | 118,129 | [
"Biopython"
] | 5419cee7ddbc56968ecfbe327bb63d2e4f7e8df3386a6f9f18841088b24d629d |
# pylint: disable=bad-continuation
"""
Certificate HTML webview.
"""
import logging
import urllib
from datetime import datetime
import pytz
from uuid import uuid4
from django.conf import settings
from django.contrib.auth.models import User
from django.http import Http404, HttpResponse
from django.template import Reque... | miptliot/edx-platform | lms/djangoapps/certificates/views/webview.py | Python | agpl-3.0 | 28,089 | [
"VisIt"
] | 47b3a11a0ec6ab5e7f65122e7ae64c7a963f1e5b49d2ec4761b64219d421ad8c |
#!/usr/bin/env python3
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgp... | nuclear-wizard/moose | modules/geochemistry/python/readers/eq36_reader.py | Python | lgpl-2.1 | 20,307 | [
"MOOSE"
] | b4415c23d1e859a6c357b263ef0d141159f18506451d8e8d4003431d85ff3d16 |
#!/usr/bin/python
# -*- coding:utf-8-*-
"""
Created on Wed Apr 12 09:38:44 2017
@author: etienne cuierrier
This script will do a least-square fitting of Gay-Berne parameters from ab initio results
The rotationally averaged results from the 4 orthogonal configurations are required
(average_X.txt,average_ll.txt,average... | EtiCui/Msc-UdeS | dataAnalysis/gayberne_fit.py | Python | mit | 11,778 | [
"LAMMPS"
] | 8cc6ceb77895a779a5d6c8a434100b803efaf3074107bad78de28ce481ff7476 |
# Copyright (C) 2013 Oskar Maier
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in ... | loli/medpy | medpy/filter/noise.py | Python | gpl-3.0 | 7,547 | [
"Gaussian"
] | cc1660c03298a47088f7886402d5c0b75824fa8536c1ad7460aea48d35587a74 |
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
class QuantumEspresso(CMakePackage):
"""Quantum ESPRESSO is an integrated suite of Open-Source computer codes
for... | LLNL/spack | var/spack/repos/builtin/packages/quantum-espresso/package.py | Python | lgpl-2.1 | 24,677 | [
"EPW",
"ESPResSo",
"QMCPACK",
"Quantum ESPRESSO"
] | 5d308dd661db9e7ff856d01687c7155ed405c938c34c850de4515d505d3b5aeb |
"""\
Main class and helper functions.
"""
import warnings
import collections.abc as cabc
from collections import OrderedDict
from copy import copy, deepcopy
from enum import Enum
from functools import partial, singledispatch
from pathlib import Path
from os import PathLike
from textwrap import dedent
from typing import... | theislab/anndata | anndata/_core/anndata.py | Python | bsd-3-clause | 75,713 | [
"Bioconductor"
] | 7f37e91b7e2d24a1dc3b8c2b729d41384a9183941edf88d3d2c4d3c8afc83149 |
""" Module holding function(s) creating the pilot wrapper.
This is a DIRAC-free module, so it could possibly be used also outside of DIRAC installations.
The main client of this module is the SiteDirector, that invokes the functions here more or less like this::
pilotFilesCompressedEncodedDict = getP... | chaen/DIRAC | WorkloadManagementSystem/Utilities/PilotWrapper.py | Python | gpl-3.0 | 7,049 | [
"DIRAC"
] | 356bf5ce508f9a16cf27d3733e2d8d394122f4df8b01bfb46a5e595e05b24376 |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/gto/moleintor.py | Python | apache-2.0 | 37,174 | [
"PySCF"
] | 9be72b94a5a2f192315ee08bb6ea3e3ac60b8bc7790638f19b8234d7394954bd |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright (C) 2013 Radim Rehurek <me@radimrehurek.com>
# Licensed under the GNU LGPL v2.1 - http://www.gnu.org/licenses/lgpl.html
"""
Deep learning via word2vec's "skip-gram and CBOW models", using either
hierarchical softmax or negative sampling [1]_ [2]_.
The train... | sjebbara/gensim | gensim/models/word2vec.py | Python | gpl-3.0 | 74,528 | [
"VisIt"
] | 3977ff1895ac43fa4abbaf257268e2da5703b4d6fac46decde1cea7bd34ce9a9 |
'''
synbiochem (c) University of Manchester 2015
synbiochem is licensed under the MIT License.
To view a copy of this license, visit <http://opensource.org/licenses/MIT/>.
@author: neilswainston
'''
# pylint: disable=too-many-public-methods
import unittest
from synbiochemdev.utils import struct_utils
class Test(... | neilswainston/development-py | synbiochemdev/utils/test/test_struct_utils.py | Python | mit | 735 | [
"VisIt"
] | 5054b4c02fa8668162ec9ba0ea3b37280973a36a419e50771f816d16c3093d07 |
from epsilon.extime import Time
from nevow.livetrial import testcase
from nevow import tags, loaders
from nevow.athena import expose
from axiom.store import Store
from axiom.userbase import LoginMethod
from axiom.dependency import installOn
from xmantissa.webtheme import getLoader
from xmantissa.people import Person... | twisted/quotient | xquotient/test/livetest_compose.py | Python | mit | 4,363 | [
"MOE"
] | 16ef69e229c301ffc59d9fe65771a26797a52d796e81ad01d93abf61c8d75f53 |
"""Utility functions for plotting M/EEG data
"""
from __future__ import print_function
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Denis Engemann <denis.engemann@gmail.com>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Eric Larson <larson.eric.d@gmail.com>
# ... | yousrabk/mne-python | mne/viz/utils.py | Python | bsd-3-clause | 30,405 | [
"Mayavi"
] | 258d41dca10ea690a0715db8b25c09045d60ead8b991da71ca7b41ba5b613034 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import re
import subprocess
import os
#import traceback
import sys
import simplejson as json
from ga_parser_class import *
def ConstructMyGaParser(jsondata):
"""
JsonData class called to construct my object
< Take jsondata
> Return a List of object JsonD... | remyd1/XMLparser-wrapper | gaclass/utils.py | Python | apache-2.0 | 15,409 | [
"Galaxy"
] | c01d2a3e10fc35dea60811ec31f9d9f74053dfc3da8e709308ea59a79a0718e5 |
"""foldtrajectory - folds atoms into the periodic computational box.
Usage:
python -m ase.io.foldtrajectory infile.traj outfile.traj
In molecular dynamics simulations with periodic boundary conditions,
atoms sometimes move out of one side of the computational box and in
through the other. Such atoms have coo... | grhawk/ASE | tools/ase/io/foldtrajectory.py | Python | gpl-2.0 | 1,246 | [
"ASE"
] | 29eddb0f1b0d7b176b732047d719ca373e5343bc13042daad590a31854cb1112 |
"""Predicates providing information about the state of the current player."""
import datetime
from apps.managers.challenge_mgr import challenge_mgr
from apps.managers.player_mgr.models import Profile
from apps.widgets.badges.models import BadgeAward
from apps.widgets.resource_goal.models import EnergyGoal
from apps.man... | jtakayama/makahiki-draft | makahiki/apps/managers/predicate_mgr/player_predicates.py | Python | mit | 3,326 | [
"VisIt"
] | 3d021459f6235d76e97eb4b83fa6812230ffddd37c309dbefb6ea880e6fc0359 |
#!/usr/bin/env python
import sys
sys.path.append('/opt/lib/python2.7/site-packages/')
import math
import numpy as np
import pylab
import nest
import nest.raster_plot
import nest.topology as tp
import uuid
def run(total, ratio_e, ratio_i, extent, wt_max, wt_min, delay_min, delay_max, ac_amp, ac_freq):
pop_e = tota... | synergetics/nest_expermiments | oscillation frequency preference/oscillation_inhibition.py | Python | mit | 5,328 | [
"Gaussian"
] | 1b0c0b677266ba2189f24b64d8d2b7e55640268c9bf20dc09f4b23c2eb68f567 |
#!/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright (c) 2014 Stefan Seefeld
# All rights reserved.
#
# This file is part of OpenVSIP. It is made available under the
# license contained in the accompanying LICENSE.BSD file.
#
# This demo is based on the k-Ω Beamformer Example by Randall Judd
# (http://portals.omg.or... | openvsip/openvsip | share/examples/python/beamformer.py | Python | gpl-2.0 | 7,062 | [
"Gaussian"
] | b020dba587e70910966579647a0386f0e694d7318162e64aec8964dd26eab29d |
'''Various functions to read PDB files for Dragonfly'''
from __future__ import print_function
from builtins import range
import sys
import logging
import os
from collections import OrderedDict
from six.moves.urllib.request import urlopen
import numpy as np
from scipy.interpolate import interp1d
try:
import pyfftw
... | duaneloh/Dragonfly | utils/py_src/process_pdb.py | Python | gpl-3.0 | 8,297 | [
"Gaussian"
] | 61e11305569fc1d1733968121eee872530cba029189524d58ace35c724b6c78b |
import h2o_cmd, h2o_util
import h2o2 as h2o
import re, random, math
from h2o_test import check_sandbox_for_errors, dump_json, verboseprint
import h2o_nodes
from tabulate import tabulate
# recursive walk an object check that it has valid numbers only (no "" or nan or inf
def check_obj_has_good_numbers(obj, hierarchy=""... | PawarPawan/h2o-v3 | py2/h2o_glm.py | Python | apache-2.0 | 29,862 | [
"Gaussian"
] | d1e049e96eb32d9070a767a54d43b61aad6874333b983021177b434514030a5c |
# -*- coding: utf-8 -*-
#
# This file is part of Invenio-Query-Parser.
# Copyright (C) 2014, 2015, 2016 CERN.
#
# Invenio-Query-Parser is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License as
# published by the Free Software Foundation; either version 2 of the
# ... | Panos512/inspire-next | inspirehep/modules/search/walkers/spires_to_invenio.py | Python | gpl-2.0 | 3,296 | [
"VisIt"
] | 08991256890895aec43695ad75d085210574729fba3d872e513e7897284fe24e |
#!/usr/bin/env python
# -*- encoding: utf-8 -*-
from __future__ import absolute_import, division, print_function, unicode_literals
import h2o
from h2o.estimators import H2OGeneralizedLinearEstimator
from h2o.exceptions import H2OTypeError
from tests import pyunit_utils
def test_glm_params():
H2OGeneralizedLinear... | h2oai/h2o-3 | h2o-py/tests/testdir_algos/glm/pyunit_glm_parameters.py | Python | apache-2.0 | 1,653 | [
"Gaussian"
] | 1180ed32310996a596d601ea230e36c0d5f438b881abcfbb2ae76f72d83744dd |
# Copyright (C) 2012,2013, 2017
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the term... | govarguz/espressopp | src/interaction/VSphereSelf.py | Python | gpl-3.0 | 4,028 | [
"ESPResSo"
] | fa40f0bfaceba03c99e669c4dbe3c48428034a82f913c16723e35209d296448b |
#
# Copyright 2016 The BigDL Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | intel-analytics/BigDL | python/orca/test/bigdl/orca/tfpark/test_keras_model.py | Python | apache-2.0 | 3,083 | [
"ORCA"
] | 995cfdb45020c878c5c56881b37f0e88c2348a31733444c14b24f7bd6ec668ae |
# -*- coding: utf-8 -*-
# This file is part of Shuup.
#
# Copyright (c) 2012-2016, Shoop Ltd. All rights reserved.
#
# This source code is licensed under the AGPLv3 license found in the
# LICENSE file in the root directory of this source tree.
import argparse
import ast
import linecache
import logging
import os
import ... | hrayr-artunyan/shuup | _misc/doccov.py | Python | agpl-3.0 | 13,318 | [
"VisIt"
] | af09c128105c1b396eabebaad64d3dc2a5accc26b9cb3b98b018c6bfabffc390 |
"""
Main script which executes the run cycle.
It will start and remain running until it is shut-down externally, and will execute the deposit.run method
repeatedly.
"""
from octopus.core import app, initialise, add_configuration
import logging
from logging import Formatter
from logging.handlers import RotatingFileHand... | JiscPER/jper-sword-out | service/runner.py | Python | apache-2.0 | 1,819 | [
"Octopus"
] | bc78d960ee6de45b304cfc57508b87b2eaee5b7ea2cf3d1fabadaa18bcc167fb |
# -----------------------------------------------------------------------------
# Copyright (c) 2015--, biocore development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# ----------------------------------------------... | biocore/burrito-fillings | bfillings/vsearch.py | Python | bsd-3-clause | 21,714 | [
"BLAST"
] | f8c6b51b1600010c341d7cb00a5d20b058ee7c0c334c64c12d7c26b0b09b07fb |
# Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | npuichigo/ttsflow | third_party/tensorflow/tensorflow/contrib/linalg/python/ops/linear_operator_test_util.py | Python | apache-2.0 | 25,544 | [
"Gaussian"
] | 7f45dfcb9a678372843d8e0ee42ee16822ae0442970d7d0f1735ab329fe0ff01 |
'''
This module contains all pythran backends.
* Cxx dumps the AST into C++ code
* Python dumps the AST into Python code
'''
from pythran.analyses import ArgumentEffects, BoundedExpressions, Dependencies
from pythran.analyses import LocalDeclarations, GlobalDeclarations, Scope
from pythran.analyses import Yiel... | artas360/pythran | pythran/backend.py | Python | bsd-3-clause | 49,314 | [
"VisIt"
] | 53b9f52416eea5b2e8d32366f698c17b2163acb3ab24579713b3888acb549086 |
#!/usr/bin/env python
"""
Extracts data from reference files or calculates FF data.
Takes a sequence of keywords corresponding to various
datatypes (ex. mb = MacroModel bond lengths) followed by filenames,
and extracts that particular data type from the file.
Note that the order of filenames IS IMPORTANT!
Used to ma... | Q2MM/q2mm | q2mm/calculate.py | Python | mit | 84,150 | [
"Amber",
"Gaussian",
"Jaguar",
"MacroModel",
"TINKER"
] | 848e3a0bdb11b9916a2ffe54071fa3ff2bad85951cf6120010fc593620734037 |
#!/usr/bin/env python
"""
blast2gff.py [options] <blast file>
"""
import sys
from optparse import OptionParser
from blast import BlastFile
import gff
usage = "%prog [options] <blast file>"
parser = OptionParser(usage=usage)
parser.add_option(
"-s", "--source",
dest="source",
help="GFF source (Default: ... | PapenfussLab/Mungo | bin/blast2gff.py | Python | artistic-2.0 | 1,596 | [
"BLAST"
] | b9633896d58a6686bcbdd3b8200e7d6a15d3ba353b9d75ffb43a7ecb9f3b76c0 |
"""
dabam: (dataBase for metrology)
python module for processing remote files containing the results
of metrology measurements on X-ray mirrors
classes:
dabam
main functions:
cdf (calculate antiderivative function)
psd (calculate power spectral densit... | srio/dabam | code/dabam.py | Python | gpl-2.0 | 75,998 | [
"Gaussian"
] | ba0903dc52e0ccc229b400439a9e64acfcbd987770b8cfa77c706674fe4ee2a4 |
"""
Functions to create initializers for parameter variables.
Usage
-------
>>> from lasagne.layers import DenseLayer
>>> from lasagne.init import Constant, Glorot
>>> l1 = DenseLayer((100,20), num_units=50, W=GlorotUniform(), b=Constant(0.0))
"""
import numpy as np
from .utils import floatX
class Initializer(obje... | dnuffer/Lasagne | lasagne/init.py | Python | mit | 10,166 | [
"Gaussian"
] | bf56386ad9fdee96dba94fc02250249fbb764ed8688c8f53b17ad3ba67a2ec1a |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2019 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | jgonthier/psi4 | psi4/driver/p4util/numpy_helper.py | Python | lgpl-3.0 | 18,310 | [
"Psi4"
] | 6dda8d73a7b6213c8bc8dce53736a3ac92dd6e35b987cb93b5c284935a6a23e0 |
import unittest
import numpy as np
import pandas as pd
from scimap.peakfitting import Peak, discrete_fwhm
# flake8: noqa
"""Module for testing generic peak fitting. Some techniques have more
specific tests (eg X-ray diffraction, X-ray microscopy."""
class GuessParameters(unittest.TestCase):
def test_single_pe... | m3wolf/scimap | tests/test_peaks.py | Python | gpl-3.0 | 1,305 | [
"Gaussian"
] | 9463fb8d20c7b4ebebaa5ad2144aea0669c192e626a48cc000d35b81f10e46d9 |
import glob
import pandas as pd
import numpy as np
import matplotlib.pyplot as plt
from matplotlib.colors import LogNorm
import sys
GRIDORDER = sys.argv[1]
def summarize():
res = []
for fn in glob.glob("dfs/*.csv"):
df = pd.read_csv(fn)
sdf = df.groupby("flowpath").sum() / 10.0
adf = ... | akrherz/idep | scripts/gridorder/flowpath_yearly.py | Python | mit | 2,401 | [
"ADF"
] | 2d572af412a07f872536d708cf1b7fefbca9e6d5709d95f1032f30faf6e0803b |
#!/usr/bin/python
#==========================================================================
#
# Copyright Insight Software Consortium
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at... | BlueBrain/ITK | Utilities/Maintenance/UpdateCopyrightStatementsInITK.py | Python | apache-2.0 | 6,488 | [
"VTK"
] | a0597d8afb2fa64e59f596fe49701718aba765bd2684e7c1ac8eb33e5442a0f7 |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | krafczyk/spack | var/spack/repos/builtin/packages/netcdf-fortran/package.py | Python | lgpl-2.1 | 2,323 | [
"NetCDF"
] | e93858d3d94547fd7dc734843663bcbdf51812f73b90f56742f3d3aa80e2a392 |
# Copyright (c) 2010-2015 Bo Lin
# Copyright (c) 2010-2015 Yanhong Annie Liu
# Copyright (c) 2010-2015 Stony Brook University
# Copyright (c) 2010-2015 The Research Foundation of SUNY
#
# Permission is hereby granted, free of charge, to any person
# obtaining a copy of this software and associated documentation files
#... | sghosh1991/distalgo | da/compiler/pygen.py | Python | mit | 43,508 | [
"VisIt"
] | 36b399263901465f6d0ff3d19c9c81305362da4bbd2f4be8009ad18649f24554 |
#pylint: disable=missing-docstring
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/... | nuclear-wizard/moose | python/chigger/graphs/Line.py | Python | lgpl-2.1 | 6,857 | [
"MOOSE",
"VTK"
] | 0afc2548af1d1c3913300848dbfee0e15add91e7e2ec3a5ab8bfe5928b8fafb5 |
from vtk import *
reader1 = vtkXMLTreeReader()
reader1.SetFileName("vtkclasses.xml")
reader1.SetEdgePedigreeIdArrayName("tree edge")
reader1.GenerateVertexPedigreeIdsOff();
reader1.SetVertexPedigreeIdArrayName("id");
reader2 = vtkXMLTreeReader()
reader2.SetFileName("vtklibrary.xml")
reader2.SetEdgePedigreeIdArrayNam... | collects/VTK | Examples/Infovis/Python/treering_hierarchical_view.py | Python | bsd-3-clause | 1,526 | [
"VTK"
] | 87a88b439b11e48348b7747fecbd5032e852f10da93eebddad9ea34255bad79e |
##############################################################################
#
# Copyright (c) 2009-2013 by University of Queensland
# http://www.uq.edu.au
#
# Primary Business: Queensland, Australia
# Licensed under the Open Software License version 3.0
# http://www.opensource.org/licenses/osl-3.0.php
#
#... | bencaradocdavies/vgml | src/main/resources/org/auscope/portal/server/scriptbuilder/templates/escript-magnetic.py | Python | gpl-3.0 | 3,212 | [
"NetCDF",
"VisIt"
] | a60e9ddcbfea21903b4f412c800b41741e2686b275c1eb39d6a04e1a3d5d9d68 |
#!/usr/bin/python
#Copyright (C) 2011 by Forrest Sheng Bao http://fsbao.net
# This software is licensed under MIT license.
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restricti... | binarybottle/mindboggle_sidelined | label_vol2surf.py | Python | apache-2.0 | 5,910 | [
"VTK"
] | 5e1f16bf25fd87a09b61ac2c678e1609e2681ecce680f08c2b712fc9f685d84d |
"""Handle extraction of final files from processing pipelines into storage.
"""
import datetime
import os
import toolz as tz
from bcbio import log, utils
from bcbio.upload import shared, filesystem, galaxy, s3
from bcbio.pipeline import run_info
import bcbio.pipeline.datadict as dd
_approaches = {"filesystem": files... | gifford-lab/bcbio-nextgen | bcbio/upload/__init__.py | Python | mit | 20,702 | [
"Galaxy"
] | 849b26251e8bfa0dede486f08210787941e407d03b1ff08c737b4abdc05007a4 |
#!/usr/bin/env python
from fbxclass import *
all_classes = get_all_classes_from_file()
root_classes = [cls for cls in all_classes if cls.name == 'FbxObject']
fbxobject = root_classes[0]
def traverse(cls, s=None):
if s is None:
s = set()
s.add(cls)
for cc in cls.children:
traverse(cc, s)
... | izrik/FbxSharp | tools/generate_visitor.py | Python | lgpl-2.1 | 2,585 | [
"VisIt"
] | 06bf29d0b484ff935fb20d1df45f966e472a99f77f6ff80392be8c97af29f4a0 |
#!/usr/bin/env python
'''
xml_comparer.py
Created by Anne Pajon on 20 Mar 2012
Copyright (c) 2012 Cancer Research UK - Cambridge Research Institute.
This source file is licensed under the Academic Free License version
3.0 available at http://www.opensource.org/licenses/AFL-3.0.
Permission is hereby granted to repro... | crukci-bioinformatics/galaxy | admin/scripts/xml_comparer.py | Python | mit | 7,138 | [
"Galaxy"
] | e1ac845dcd603d69c27bc1a628c4a5c06d149c16bf50fe3a68b82e6c3bf3f4c1 |
# ============================================================================
#
# Copyright (C) 2007-2010 Conceptive Engineering bvba. All rights reserved.
# www.conceptive.be / project-camelot@conceptive.be
#
# This file is part of the Camelot Library.
#
# This file may be used under the terms of the GNU General... | kurtraschke/camelot | camelot/view/controls/delegates/manytomanydelegate.py | Python | gpl-2.0 | 1,899 | [
"VisIt"
] | cce5607bd0b783d4eb3bcbde7d3d514eab39789122edba241f3742f195653175 |
#!/usr/bin/python
#
# Author : Pierre-Jean Coudert
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; version 2 of the License.
#
# This program is distributed in the hope that it will... | frac/twitter-autoblock | setup.py | Python | gpl-2.0 | 4,983 | [
"Jaguar"
] | affec81caf9f747b9661267c735706207c33c6d7495c984878e19055a7997b04 |
"""
This migration script renames the sequencer table to 'external_service' table and
creates a association table, 'request_type_external_service_association' and
populates it. The 'sequencer_id' foreign_key from the 'request_type' table is removed.
The 'sequencer_type_id' column is renamed to 'external_service_type_id... | mikel-egana-aranguren/SADI-Galaxy-Docker | galaxy-dist/lib/galaxy/model/migrate/versions/0068_rename_sequencer_to_external_services.py | Python | gpl-3.0 | 14,154 | [
"Galaxy"
] | b8c78ca674457561276cf2ae0bf49c49aad17882a6b51f8ae8a183f12c6754f2 |
from random import shuffle
from typing import Optional
import aiohttp
from redbot.core.i18n import Translator, cog_i18n
from redbot.core import checks, Config, commands
from redbot.core.commands import UserInputOptional
_ = Translator("Image", __file__)
@cog_i18n(_)
class Image(commands.Cog):
"""Image related ... | palmtree5/Red-DiscordBot | redbot/cogs/image/image.py | Python | gpl-3.0 | 9,620 | [
"VisIt"
] | 4c481afc8983e0f848afaef228b3a3aeb2d212f6500cefdbdf231b69040d456a |
# (C) British Crown Copyright 2010 - 2013, Met Office
#
# This file is part of Iris.
#
# Iris is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the
# Free Software Foundation, either version 3 of the License, or
# (at your option) any l... | kwilliams-mo/iris | lib/iris/io/__init__.py | Python | gpl-3.0 | 13,332 | [
"NetCDF"
] | f268b589a2c20e7131a0289a10a2948977640002dbf8c93137a0994ce7bb6196 |
#!/usr/bin/env python
# Copyright (c) 2011 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
import glob
import logging
import os
import pyauto_functional # Must be imported before pyauto
import pyauto
class ThemesTest(p... | aYukiSekiguchi/ACCESS-Chromium | chrome/test/functional/themes.py | Python | bsd-3-clause | 4,381 | [
"VisIt"
] | 4da3d737b44f8e72e1288f32d0baf886bd1d81dd0e2b1b8843c2dd73ddaeafeb |
import json
import requests
import unittest2 as unittest
class TestLauncher(unittest.TestCase):
def test_basic(self):
data = json.dumps({'application': 'basic'})
req = requests.post(
'http://localhost:8080/vtk',
data=data
)
self.assertTrue(req.ok)
... | jbeezley/vtkweb-launcher | test/test_launcher.py | Python | bsd-3-clause | 1,612 | [
"VTK"
] | 6bcfc846a6047d776de7c7b3a994938ddb2916582bc809cba04f928df76c97e3 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
import os
import six
from six.moves import filter, map
from collections import defaultdict
from monty.design_patterns import cached_class
from monty.serializ... | xhqu1981/pymatgen | pymatgen/entries/compatibility.py | Python | mit | 24,628 | [
"VASP",
"pymatgen"
] | 0182d04e062fa2f462aa568d2902eeff2cdc8dea3fcdacdc2c2b6ed0aaa0c0b7 |
###########################################################################
#
# Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/l... | google/starthinker | dags/dv360_targeter_dag.py | Python | apache-2.0 | 7,275 | [
"VisIt"
] | ea57b7b647efcde32f49fd92ec7d6ec2f73fa7902a08c6f209d7387c5d7efb13 |
#!/usr/bin/env python
from vtk import *
import os.path
data_dir = "../../../../VTKData/Data/Infovis/SQLite/"
if not os.path.exists(data_dir):
data_dir = "../../../../../VTKData/Data/Infovis/SQLite/"
sqlite_file = data_dir + "SmallEmailTest.db"
database = vtkSQLDatabase.CreateFromURL("sqlite://" + sqlite_fi... | timkrentz/SunTracker | IMU/VTK-6.2.0/Examples/Infovis/Python/database_query1.py | Python | mit | 627 | [
"VTK"
] | e814e346a19a789ab3068db084f4b92ba30aec238b71bc33466eab57997627cb |
#!/usr/bin/env python
#
# Appcelerator Titanium Module Packager
#
#
import os, subprocess, sys, glob, string
import zipfile
from datetime import date
cwd = os.path.abspath(os.path.dirname(sys._getframe(0).f_code.co_filename))
os.chdir(cwd)
required_module_keys = ['name','version','moduleid','description','copyright','... | ryugoo/TiExtendTab | build.py | Python | mit | 6,804 | [
"VisIt"
] | f9d0820ee5a749060727dd6ed862f0954688edc6076b0a136adbf6cbcf32a6ee |
# This script is executed in the main console namespace so
# that all the variables defined here become console variables.
import ddapp
import os
import sys
import PythonQt
import json
from PythonQt import QtCore, QtGui
from time import time
import imp
import ddapp.applogic as app
from ddapp import drcargs
from ddapp... | rdeits/director | src/python/ddapp/startup.py | Python | bsd-3-clause | 38,265 | [
"VTK"
] | dfe295adc47fa75b5b119eba06b22035165e0da6306f56a4db4f6a293c403f66 |
import pandas as pd
import numpy as np
from statsmodels.tsa.stattools import adfuller as ADF
s = pd.Series([1, 2, 3], index = ['a', 'b', 'c'])
d = pd.DataFrame([[1, 2, 3], [4, 5, 6]], columns = ['a', 'b', 'c'])
d2 = pd.DataFrame(s)
d.head()
d.describe()
#pd.read_excel('data.xls')
#pd.read_csv('data.csv', encoding ... | XiangYz/webscraper | data2.py | Python | lgpl-2.1 | 358 | [
"ADF"
] | 4c02dd0ba8bac9482d61a37d3b91eb0f39efa216dcd1a4fbfd87a4e1ae7f3ddc |
# basic block timing analysis
import utils
import msp_base as base
import msp_fr5969_model as model
import msp_elftools as elftools
from msp_isa import isa
import msp_instr as instr
class BasicBlock(object):
def __init__(self, addr, verbosity = 0):
self.addr = addr
self.instrs = []
self.ca... | billzorn/msp-pymodel | lib/msp_cfg.py | Python | mit | 22,399 | [
"VisIt"
] | 3e88282b328a855ac97e78d8103a6bf37cc1a2115c6d6a265696887a6e686bdb |
#!/bin/env python
#Copyright ReportLab Europe Ltd. 2000-2004
#see license.txt for license details
#history http://www.reportlab.co.uk/cgi-bin/viewcvs.cgi/public/reportlab/trunk/reportlab/lib/randomtext.py
__version__=''' $Id: randomtext.py 3342 2008-12-12 15:55:34Z andy $ '''
##################################... | commtrack/temp-aquatest | reportlab/lib/randomtext.py | Python | bsd-3-clause | 19,004 | [
"Brian",
"Galaxy"
] | 5ce0b41f65806a1125f98cf3d6008dd8764d68cce408c66d29059fab4fb1b3b6 |
# Copyright 2012 Jose Blanca, Peio Ziarsolo, COMAV-Univ. Politecnica Valencia
# This file is part of ngs_crumbs.
# ngs_crumbs is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as
# published by the Free Software Foundation, either version 3 of the
# License, ... | JoseBlanca/ngs_crumbs | test/seq/test_trim.py | Python | gpl-3.0 | 31,869 | [
"BLAST"
] | f33959644ed2e1bb2bfd65e2cbca0be10c776b95f2abcfb532c665bc10e410f2 |
import os
from ase import Atom, Atoms
from ase.parallel import size, rank
from gpaw import GPAW, FermiDirac
from gpaw.analyse.simple_stm import SimpleStm
from gpaw.test import equal
load=True
load=False
txt = '/dev/null'
txt='-'
me = ''
if size > 1:
me += 'rank ' + str(rank) + ': '
BH = Atoms([Atom('B', [.0, .... | qsnake/gpaw | gpaw/test/simple_stm.py | Python | gpl-3.0 | 2,676 | [
"ASE",
"GPAW"
] | 7e9f351809a700684e98dc200f2c91507dcba7eba0f2c88c71541b653229fc3e |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module provides utilities for basic math operations.
"""
import collections
import numpy as np
def abs_cap(val, max_abs_val=1):
"""
Returns the value with its absolute value capped at max_... | gmatteo/pymatgen | pymatgen/util/num.py | Python | mit | 4,590 | [
"pymatgen"
] | 2f3615ed3e5bbc6f7865d6012ee0e9386c748bfb5aebeda53f7fc70c8cefa075 |
#
# Copyright 2016 The BigDL Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | intel-analytics/BigDL | python/chronos/src/bigdl/chronos/model/Seq2Seq_pytorch.py | Python | apache-2.0 | 5,461 | [
"ORCA"
] | 0b94494466f2f569a6499a39fbeabc4a807b5514e129681d2b9ee0e4dfc4495e |
# -*- coding: utf-8 -*-
# Copyright 2013 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless require... | mattdr/gsutil | gslib/addlhelp/creds.py | Python | apache-2.0 | 8,137 | [
"VisIt"
] | 133ac74f80a215b6caa80884cde87261c75f239cd371a57fceb4d0ab345f19d9 |
import numpy
import scipy.stats
from scipy.stats import multivariate_normal
from scipy.linalg import orth
import matplotlib.pyplot as plt
from math import pi ,sin, cos
import h5py
from scipy.ndimage.filters import gaussian_filter
class rotation_3d(object):
"""
the class allows one to rotate a 3D vector in different... | davidwhogg/DeprojectAllGalaxies | scripts/astrohack_projections.py | Python | mit | 15,510 | [
"Galaxy"
] | 55bcdcac3245578c3db09a71b0be572ff0bae94a9df854c6559cc6e8de5f6d04 |
# Copyright 2017 The Forseti Security Authors. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by ap... | forseti-security/forseti-security | google/cloud/forseti/services/inventory/crawler.py | Python | apache-2.0 | 11,979 | [
"VisIt"
] | c8b9c058c49f5dc86ce4284193b334b8cd5c473051df76800b7b6f7a6a8b1361 |
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