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import telebot
from telebot.types import LabeledPrice, ShippingOption
token = '1234567890:AAAABBBBCCCCDDDDeeeeFFFFgggGHHHH'
provider_token = '1234567890:TEST:AAAABBBBCCCCDDDD' # @BotFather -> Bot Settings -> Payments
bot = telebot.TeleBot(token)
# More about Payments: https://core.telegram.org/bots/payments
prices ... | sgomez/pyTelegramBotAPI | examples/payments_example.py | Python | gpl-2.0 | 4,308 | [
"VisIt"
] | 2840afd25016346e036ae8f0ebba26a866e851dda999ceb41d784c786f65d2ee |
import ocl
import camvtk
import time
import vtk
import datetime
import math
def drawPoints(myscreen, clpoints, ccpoints):
c=camvtk.PointCloud( pointlist=clpoints, collist=ccpoints)
c.SetPoints()
myscreen.addActor(c )
def drawFiber(myscreen, f, fibercolor=camvtk.red):
inter = f.getInts()
for i in ... | AlanZatarain/opencamlib | scripts/fiber_02_onetriangle_drawfibers.py | Python | gpl-3.0 | 3,692 | [
"VTK"
] | f3e696eaedaf1ffaabccd6bb21d5eb920e13b82f66f1d31dec001ad9d01425fe |
"""
Learning functions for Projections.
For example, CFProjectionLearningFunctions compute a new set of
ConnectionFields when given an input and output pattern and a set of
ConnectionField objects.
$Id$
"""
__version__ = "$Revision$"
from numpy import ones,zeros
import numpy.oldnumeric as Numeric
from numpy.oldnume... | jesuscript/topo-mpi | topo/learningfn/projfn.py | Python | bsd-3-clause | 12,442 | [
"NEURON"
] | a21e549c0715817d7669767f5bceb46745daa64f4e6e0239b89d9cd1c8947ffb |
from __future__ import print_function, absolute_import, division, unicode_literals
"""Convert to and from Roman numerals"""
__author__ = "Mark Pilgrim (f8dy@diveintopython.org)"
__version__ = "1.4"
__date__ = "8 August 2001"
__copyright__ = """Copyright (c) 2001 Mark Pilgrim
This program is part of "Dive Into Python... | profxj/xastropy | xastropy/outils/roman.py | Python | bsd-3-clause | 2,817 | [
"VisIt"
] | 0b31dda1994fcb9b56d01dab66c08caec66d053cdbbf0890fd39ae303fc4330d |
#!/usr/bin/env python
##############################################################################################
#
#
# regrid_emissions_N96e.py
#
#
# Requirements:
# Iris 1.10, time, cf_units, numpy
#
#
# This Python script has been written by N.L. Abraham as part of the UKCA Tutorials:
# http://www.ukca.ac.u... | acsis-project/emissions | emissions/python/timeseries_1950-2020/regrid_iC5H12_emissions_n96e_360d.py | Python | gpl-3.0 | 18,872 | [
"NetCDF"
] | 8b63cdf346b7104badf9e96eb9e012335fa6ff6951a66298c45b02c99636907c |
#!/usr/bin/env python
#pylint: disable=missing-docstring
#################################################################
# DO NOT MODIFY THIS HEADER #
# MOOSE - Multiphysics Object Oriented Simulation Environment #
# #... | Chuban/moose | python/chigger/tests/range/min.py | Python | lgpl-2.1 | 1,362 | [
"MOOSE"
] | d386c1f76931f9e4971ed8098ce4db5d7f694cc403af52bdb6fbe0d779d54c3a |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
from django.views.generic import TemplateView
from django.views import defaults as default_views
from dj... | arsenalstriker14/imagetraccloud | config/urls.py | Python | mit | 6,487 | [
"VisIt"
] | 0878b8d3065a8ca14be00b7ec8594ee761ff4b12a6127d8d6dd6894763b5e829 |
# -*- coding: utf-8 -*-
#-------------------------------------------------------------------------------
# Name: PyZDDEunittest.py
# Purpose: PyZDDE unit test using the python unittest framework
#
# Licence: MIT License
# This file is subject to the terms and conditions of the MIT License.
#... | indranilsinharoy/PyZDDE | Test/pyZDDEunittest.py | Python | mit | 86,617 | [
"Gaussian"
] | a675cb3c1d1696f21d96daf99bb3fdf6906589185f0c01277105e20e698e5c7f |
# This file is part of OpenHatch.
# Copyright (C) 2010 Parker Phinney
# Copyright (C) 2010 Karen Rustad
# Copyright (C) 2011 Jack Grigg
# Copyright (C) 2009, 2010 OpenHatch, Inc.
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as pub... | jledbetter/openhatch | mysite/search/models.py | Python | agpl-3.0 | 31,607 | [
"exciting"
] | dfa917e480db7be793c99a4abd009e02cc1ffd6d45985a5230a07b46666126e2 |
"""
Test basic molecular features.
"""
import numpy as np
import unittest
from rdkit import Chem
from deepchem.feat.basic import MolecularWeight, RDKitDescriptors
class TestMolecularWeight(unittest.TestCase):
"""
Test MolecularWeight.
"""
def setUp(self):
"""
Set up tests.
"""
smiles = 'CC(=... | joegomes/deepchem | deepchem/feat/tests/test_basic.py | Python | mit | 1,025 | [
"RDKit"
] | cef7b9c9e0ad487e99db265fab901c6f85b0d0c3aeab9497a99378c3d91510ba |
#!/usr/bin/env python2.7
"""
Simple sequencing file statistics.
Gather the following numbers:
* Percentages of bases with quality at least Q40, Q30, and Q20 from FASTQ
files.
* Percentages of reads whose average quality is at least Q40, Q30, and Q20.
Requirements:
* Python == 2.7.x
* Biopython... | ablifedev/ABLIRC | ABLIRC/bin/public/seq_quality_stat.py | Python | mit | 3,339 | [
"Biopython"
] | e47222303e661fd7891a29492ce0fc8b403e44a0b54dba91131d8aff41005ccc |
# Copyright 2012 by Wibowo Arindrarto. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Bio.SearchIO parser for HMMER domain table output format."""
from itertools import cha... | zjuchenyuan/BioWeb | Lib/Bio/SearchIO/HmmerIO/hmmer3_domtab.py | Python | mit | 12,530 | [
"Biopython"
] | bfe81c72a6aabd0f49f98b85e4165a71881824505249216353d66dff8e6ea0cc |
"""
Module defining halo model components for halo exclusion.
"""
import numpy as np
from hmf import Component
from cached_property import cached_property
from scipy import integrate as intg
import warnings
from hmf._internals import pluggable
try:
from numba import jit
USE_NUMBA = True
except ImportError: #... | steven-murray/halomod | src/halomod/halo_exclusion.py | Python | mit | 18,292 | [
"TINKER"
] | 2bddf09dd9a63d90c3b0f56989a198d492d47394e808bbdb3c7928560e513116 |
# Copyright (c) 2012 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
"""Nodes for PPAPI IDL AST."""
from idl_namespace import IDLNamespace
from idl_node import IDLAttribute, IDLFile, IDLNode
from idl_option import GetOpti... | aYukiSekiguchi/ACCESS-Chromium | ppapi/generators/idl_ast.py | Python | bsd-3-clause | 4,288 | [
"VisIt"
] | bfccc155a18da08a3892281038224503b4e4aeb0f1fa0f3837303a562520b2dd |
#!/usr/bin/python
## Global modules
import os
from os.path import join
import logging
import shutil
import pysam
## Local modules
import mglobals
import helpers
import snp2gene
import snps_combine
log = logging.getLogger('pipeline')
def trim():
log.info('Beginning trim')
os.chdir(mglobals.samples_path)
... | d-quinn/bio_quinn2013 | gene_estimates/pipeline-pairedend_altfastas.py | Python | mit | 16,026 | [
"pysam"
] | 3d540f2c1f536bfa61a4ca809c5724cec74483e8aad5d036988b5030e34c7ee1 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# TAMkin is a post-processing toolkit for normal mode analysis, thermochemistry
# and reaction kinetics.
# Copyright (C) 2008-2012 Toon Verstraelen <Toon.Verstraelen@UGent.be>, An Ghysels
# <An.Ghysels@UGent.be> and Matthias Vandichel <Matthias.Vandichel@UGent.be>
# Center ... | molmod/tamkin | tamkin/examples/011_ethyl_ethene_lot/reaction.py | Python | gpl-3.0 | 11,623 | [
"Gaussian"
] | 305fe2a8d60cefa6734a242f0b0606f261a158662b18d3baf96ad2323b9e0f5a |
from __future__ import division, print_function, absolute_import
from scipy import stats
import numpy as np
from numpy.testing import assert_almost_equal, assert_, assert_raises, \
assert_array_almost_equal, assert_array_almost_equal_nulp, run_module_suite
def test_kde_1d():
#some basic tests comparing to no... | ales-erjavec/scipy | scipy/stats/tests/test_kdeoth.py | Python | bsd-3-clause | 6,412 | [
"Gaussian"
] | a11d9c10dfa4f42b80546a1a7d9493f69492d1184dc8ea72340c7b84cd2e2c2f |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2021 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | ashutoshvt/psi4 | psi4/driver/qcdb/util/__init__.py | Python | lgpl-3.0 | 984 | [
"Psi4"
] | 716c287c4009a3820c0f569d6db4c494879dddfc4854e0980debeba81c740017 |
#!/usr/bin/env python
import pybedtools
import pysam
import vcf
import re
import vcf
import numpy as np
from scipy.stats import mannwhitneyu
import filt_cnvs
def create_bedTools(cnv_file):
cnv_bed = ""
with open(cnv_file, 'r') as f:
for line in f:
line = line.replace("\n","")
... | huguesfontenelle/cnvScan | src/annotate.py | Python | gpl-3.0 | 16,482 | [
"pysam"
] | 80620fdc11f4d1618418e72a80dcb9cf0668c0b4c0ddc67c7c813559d42d9374 |
#!/usr/bin/python
######################################################################
# Ascii TMS Viewer
#
#--------------------------------------------------------------------
# Brian Hone | Initial Release
#--------------------------------------------------------------------
# ... | flailingsquirrel/asciimapper | Wget.py | Python | bsd-3-clause | 5,007 | [
"Brian"
] | 97ca5d2d710183640ef91354c6ec5867acc46678851417a19a5335652c30368d |
"""The Mayavi Envisage application.
"""
# Author: Prabhu Ramachandran <prabhu@enthought.com>
# Copyright (c) 2008-2015, Enthought, Inc.
# License: BSD Style.
# Standard library imports.
import sys
import os.path
import logging
# Enthought library imports.
from apptools.logger.api import LogFileHandler, FORMATTER
from... | dmsurti/mayavi | mayavi/plugins/app.py | Python | bsd-3-clause | 8,778 | [
"Mayavi"
] | 98643644e89482f4b8fdc1df35d33f0f50420939904597396e0e696262b8fff4 |
#!/usr/bin/env python3
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgp... | harterj/moose | python/MooseDocs/test/extensions/test_katex.py | Python | lgpl-2.1 | 8,041 | [
"MOOSE"
] | 62a32a125c5b80c8969caa954768ceaad6cb674dc1b0aea4793f8682c58aff68 |
# Copyright (C) 2010-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later v... | espressomd/espresso | samples/immersed_boundary/sampleImmersedBoundary.py | Python | gpl-3.0 | 3,438 | [
"ESPResSo",
"VTK"
] | 31d0222756d85352221a9218d309d5a022bfb93307498f4d6f71b28298400baa |
#!/usr/bin/env python
import os,sys
from os.path import join,abspath,split
import inspect
from collections import OrderedDict as odict
import numpy as np
from numpy.lib.recfunctions import stack_arrays
import fitsio
import ugali.utils.projector
from ugali.utils.projector import gal2cel, cel2gal
import ugali.utils.idl... | kadrlica/ugali | ugali/candidate/associate.py | Python | mit | 16,624 | [
"Galaxy"
] | 689dd7c854558f8fd0ebe8f6d2b40997424c2e85e5db77cd816172759cbc0794 |
# $HeadURL$
__RCSID__ = "$Id$"
import os
import os.path
try:
import hashlib as md5
except:
import md5
from DIRAC import gLogger, gConfig, S_OK, S_ERROR
from DIRAC.ConfigurationSystem.Client.PathFinder import getServiceSection
from DIRAC.FrameworkSystem.private.monitoring.ColorGenerator import ColorGenerator
from DI... | Sbalbp/DIRAC | FrameworkSystem/private/monitoring/RRDManager.py | Python | gpl-3.0 | 10,184 | [
"DIRAC"
] | a345d889f9f51bbb2e587d99820dce53059b2a9451c14ffe3da0d6312a477e26 |
#! /usr/bin/env python3
import sys
from SWEET import *
p = JobGeneration()
p.compilecommand_in_jobscript = False
#
# Run simulation on plane or sphere
#
p.compile.program = 'swe_sphere'
p.compile.plane_or_sphere = 'sphere'
p.compile.plane_spectral_space = 'disable'
p.compile.plane_spectral_dealiasing = 'disable'... | schreiberx/sweet | benchmarks_sphere/rexi_mass_energy_galewsky_martinium/jobs_create.py | Python | mit | 10,962 | [
"Gaussian"
] | 1b324a48509c7d29240e24e70c81cc923a77aa7b4719c56da27d502ca65f537e |
from django.db import models
from django.contrib.auth.models import User
import requests
import json
from datetime import datetime, timedelta
import dateutil.parser
from pushbullet import PushBullet
from settings_local import PUSHBULLET_KEY, GITLAB_KEY, GITLAB_URL
import html5lib
from django.utils.crypto import get_ran... | arlyon/codestreak | models.py | Python | mit | 5,337 | [
"VisIt"
] | 27cd7d12ec003b49730e3d0d63f4f38d68eaa446039da26eadd85157ff1f0912 |
import os
import os.path
import sys
sys.path.insert(0, os.path.abspath('lib'))
from ansible.release import __version__, __author__
try:
from setuptools import setup, find_packages
except ImportError:
print("Ansible now needs setuptools in order to build. Install it using"
" your package manager (us... | gptech/ansible | setup.py | Python | gpl-3.0 | 3,121 | [
"Galaxy"
] | 1bf733c54188d16ea04795087b217d071776348bf42c4e6c78b5fc6712b8dd1d |
#!/usr/bin/env python -i
# preceeding line should have path for Python on your machine
# gui.py
# Purpose: control a continuously running LAMMPS simulation via a Tkinter GUI
# Syntax: gui.py in.lammps Nfreq
# in.lammps = LAMMPS input script
# Nfreq = query GUI every this many steps
# IMPORTANT: thi... | arielzn/lammps | python/examples/gui.py | Python | gpl-2.0 | 2,890 | [
"LAMMPS"
] | abd98aed4f274651d1242651e5f9d84f29a7116b9b170ac403e78e514bb09eb2 |
# ----------------------------------------------------------------------
# Numenta Platform for Intelligent Computing (NuPIC)
# Copyright (C) 2015, Numenta, Inc. Unless you have purchased from
# Numenta, Inc. a separate commercial license for this software code, the
# following terms and conditions apply:
#
# This pro... | numenta/nupic.rogue | avogadro/agent.py | Python | agpl-3.0 | 2,347 | [
"Avogadro"
] | 1c94cbe0d30aa4260fb288a79d188addb7ae562219019c79ab23407b9d9b172e |
from numpy import exp,concatenate,array,float,r_
from pylab import plot,ylabel,xlabel,gca,draw,legend,subplot,show,text,gcf,rand
from numpy import zeros,arange,ones,convolve,floor
import numpy as np
import matplotlib as mpl
mpl.rcParams['lines.linewidth'] = 3
mpl.rcParams['figure.figsize'] = (10,8)
mpl.rcParams['axes.... | bblais/Plasticnet | splikes/utils.py | Python | mit | 24,339 | [
"NEURON"
] | 8d5e37636d15dd34eba996ee8ce8329681a988b5051607fd9f8eae71ba76a146 |
from __future__ import absolute_import, print_function
from . import common_info
from . import c_spec
#----------------------------------------------------------------------------
# The "standard" conversion classes
#----------------------------------------------------------------------------
default = [c_spec.int_c... | GbalsaC/bitnamiP | venv/lib/python2.7/site-packages/scipy/weave/converters.py | Python | agpl-3.0 | 2,746 | [
"VTK"
] | 4c009f00ba8d1d46f8ffb097d79fc63ef7d62622d549f30769f62265b3d9f9d9 |
# -*- coding: utf-8 -*-
##############################################################################
#
# OpenERP, Open Source Management Solution
# Copyright (C) 2004-2009 Tiny SPRL (<http://tiny.be>).
# Copyright (C) 2010-2014 OpenERP s.a. (<http://openerp.com>).
#
# This program is free software: you ca... | BT-astauder/odoo | openerp/tools/misc.py | Python | agpl-3.0 | 45,247 | [
"VisIt"
] | ef3b625c955b7f1d6b1044459855fd0c93fbfdec5430e876173d0692f58b907d |
# ============================================================================
#
# Copyright (C) 2007-2010 Conceptive Engineering bvba. All rights reserved.
# www.conceptive.be / project-camelot@conceptive.be
#
# This file is part of the Camelot Library.
#
# This file may be used under the terms of the GNU General... | kurtraschke/camelot | camelot/view/controls/delegates/booldelegate.py | Python | gpl-2.0 | 4,796 | [
"VisIt"
] | 5d9707476beb24aead1e22f39ae7dd25364f7b5dba3f3f9434e666b268869125 |
#!/usr/bin/env python
# Written by Soo Lee and Carl Vitzthum
# This code is based on the following open-source projects:
# pytabix (https://github.com/slowkow/pytabix)
# pysam (https://github.com/pysam-developers)
# The Github repo for this project is:
# https://github.com/4dn-dcic/pairix
# IMPORTANT: use Python 2.7 or... | 4dn-dcic/pairix | setup.py | Python | mit | 2,134 | [
"pysam"
] | 71ee7be862cd227ef0d4bca8286cc6852bb63a9f36db40f9c12cd24ecebfe8ce |
"""
Soft Actor-Critic (SAC)
------------------
Actor policy in SAC is stochastic, with off-policy training.
And 'soft' in SAC indicates the trade-off between the entropy and expected return.
The additional consideration of entropy term helps with more explorative policy.
And this implementation contains an automatic... | zsdonghao/tensorlayer | examples/reinforcement_learning/tutorial_SAC.py | Python | apache-2.0 | 19,736 | [
"Gaussian"
] | 3d003f5a30536189e0b822b72623755051e9217dd4be7647368ff0d35b9d6eb7 |
# Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | dongjoon-hyun/tensorflow | tensorflow/python/ops/distributions/normal.py | Python | apache-2.0 | 9,800 | [
"Gaussian"
] | 875666b4cdbfe946c7dfb242ff09f123466c7b1cddf8bfab004664c60b2aa8bc |
import datetime
import math
import time
from django.utils.tzinfo import FixedOffset
from canvas.redis_models import RedisHash, RedisKey
from canvas import knobs
from django.conf import settings
class Sticker(object):
"""
A datastructure to hold a Canvas sticker definition.
Note that the `details` prope... | drawquest/drawquest-web | website/canvas/stickers.py | Python | bsd-3-clause | 21,635 | [
"exciting"
] | 67dcfb86298b82d8086543b40aca11f39f38358c4a7e11f3ad453c5087dde66c |
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------------------------------... | xguse/scikit-bio | skbio/stats/ordination/tests/test_correspondence_analysis.py | Python | bsd-3-clause | 7,852 | [
"scikit-bio"
] | 956a6a58726b22358323e9cc249d822e0304d840627a575eaede9a07f814c4e4 |
# -*- coding: utf-8 -*-
# Generated by Django 1.9.7 on 2016-06-15 15:10
from __future__ import unicode_literals
from django.db import migrations
class Migration(migrations.Migration):
dependencies = [
('visit', '0103_visit_answerset'),
]
operations = [
migrations.RemoveField(
... | koebbe/homeworks | visit/migrations/0104_remove_visit_type.py | Python | mit | 384 | [
"VisIt"
] | f7e7082c26c68ca23cb67a7b3a078daf67349ff31600cb75bf10d5dcacd70520 |
# -*- coding: utf-8 -*-
#
##############################################################################
#
# Authors: Adrien Peiffer
# Copyright (c) 2014 Acsone SA/NV (http://www.acsone.eu)
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero Genera... | acsone/l10n-belgium | account_companyweb/__openerp__.py | Python | agpl-3.0 | 2,962 | [
"VisIt"
] | 07076977d05dc0d4c317bc10e01bd3cd783aec552c7a5e93094b8382c7c8c89a |
import py
import pytest
import cfme
import subprocess
import sys
ROOT = py.path.local(cfme.__file__).dirpath()
MODULES = sorted(x for x in ROOT.visit("*.py") if 'test_' not in x.basename)
KNOWN_FAILURES = set(ROOT.dirpath().join(x) for x in[
'cfme/utils/ports.py', # module object
'cfme/utils/dockerbot/check... | anurag03/integration_tests | cfme/tests/test_modules_importable.py | Python | gpl-2.0 | 1,129 | [
"VisIt"
] | 26d74a1423331e087529b99d15a7d51a17dae1e9e3d7b65e9fff126afc2209aa |
#!/usr/bin/env python
#
# simple script to repeatedly publish an MQTT message
#
# uses the Python MQTT client from the Paho project
# http://eclipse.org/paho
#
# Andy Piper @andypiper http://andypiper.co.uk
#
# 2011/09/15 first version
# 2012/05/28 updated to use new pure python client from mosquitto
# 2014/02/03 up... | xively/ee_live_2014 | python/pull-blue.py | Python | mit | 920 | [
"BLAST"
] | 899f0bf41a7d44022f530ba639821c29d0a81206084740a3813e7d02528a105f |
#!/usr/bin/env python
# -*- coding: utf-8
"""This file contains Kegg related classes."""
import os
import shutil
import glob
import re
import copy
import statistics
import json
import time
import hashlib
import pandas as pd
import numpy as np
from scipy import stats
import anvio
import anvio.db as db
import anvio.uti... | meren/anvio | anvio/kegg.py | Python | gpl-3.0 | 303,026 | [
"VisIt"
] | 9e72f147d44b269cf7467cb35c5803e0ce91a6885fb077918d9dc42d601560d2 |
#!/usr/bin/python
from __future__ import print_function
import os
import glob
import argparse
import numpy as np
import sys
from dicom_tools.make_histo import make_histo
# from dicom_tools.read_files import read_files
from dicom_tools.FileReader import FileReader
import ROOT
from array import array
from dicom_tools.myr... | carlomt/dicom_tools | bin/dicom_make_histo_indir.py | Python | mit | 19,988 | [
"Gaussian"
] | 0cb4e039485d74630c17bc6f19f604996f709b82c1bce6d5ca6fe7a5609f5e3a |
'''
Random Field Theory expectations and probabilities.
The core RFT computations are conducted inside **prob.rft**, and the
**RFTCalculator** class serves as a high-level interface to **prob.rft**
'''
# Copyright (C) 2015 Todd Pataky
# version: 0.1.3 (2015/12/27)
from math import pi,log,sqrt,exp
import numpy as ... | 0todd0000/rft1d | rft1d/prob.py | Python | gpl-3.0 | 21,872 | [
"Gaussian"
] | 7c1e60957680e97e646b5d0d306994040ec14079225403c3865899ab2e0b28a8 |
"""
Tests for get_smiles_map.py.
"""
import shutil
import tempfile
import unittest
from rdkit import Chem
from vs_utils.scripts.get_smiles_map import main, parse_args
from vs_utils.utils import read_pickle
class TestGetSmilesMap(unittest.TestCase):
"""
Tests for get_smiles_map.py.
"""
def setUp(self... | rbharath/vs-utils | vs_utils/scripts/tests/test_get_smiles_map.py | Python | gpl-3.0 | 2,991 | [
"RDKit"
] | 823d7ec4b9e13445a4f0ba22f4a4f4ffd55e6c434636e41889f30be495cee37e |
"""
Provides some visualization capabilities.
"""
# IMPORTS
try:
import matplotlib.pyplot as plt
from mpl_toolkits.mplot3d import Axes3D
from matplotlib import cm
except ImportError as err:
# Could not import pyplot
# ... do some stuff here
raise err
# DEBUGGING
from IPython import embed as IP... | pysofe/pysofe | pysofe/visualization.py | Python | bsd-3-clause | 22,194 | [
"Gaussian"
] | e4468447f734bdbe0c4712c25c56e0c4cae9bf23d4f9402a39811abdbc6980c6 |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=120 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# ------------------------------------------------------... | marmyshev/transitions | openlp/plugins/presentations/lib/impresscontroller.py | Python | gpl-2.0 | 18,222 | [
"Brian"
] | b5e83a1300e43d023c86b189f4ba1d12a71aba940df079e39be7abe62b56265d |
#
# Copyright 2018 Analytics Zoo Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to... | intel-analytics/analytics-zoo | pyzoo/zoo/orca/data/pandas/__init__.py | Python | apache-2.0 | 764 | [
"ORCA"
] | 3828f185b59818105dd223099fb8042d7f28616369550744dfbbcbf8ff4159c8 |
import os
import logging
from shutil import copyfile
import time
from collections import OrderedDict
import vtk, qt, ctk, slicer
from slicer.ScriptedLoadableModule import *
from CIP.logic.SlicerUtil import SlicerUtil
from CIP.logic import Util
from CIP.logic import geometry_topology_data as gtd
#
# CIP_PointsLabelli... | acil-bwh/SlicerCIP | Scripted/CIP_PointsLabelling/CIP_PointsLabelling.py | Python | bsd-3-clause | 28,331 | [
"VTK"
] | 34de21726260dcdfa7384d861ca9079d0a38ab1fcfc391fd3be2e2d152e06e8c |
#!/usr/bin/env python
"""
Kukkaisvoima a lightweight weblog system.
Copyright (C) 2006-2012 Petteri Klemola
Kukkaisvoima is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License version 3
as published by the Free Software Foundation.
Kukkaisvoima is distrib... | druss316/G-Harvestor | html/blog.py | Python | gpl-3.0 | 57,034 | [
"Galaxy"
] | b91619528dad9945d3bd7451501e992f7fe3c28d1ef67e9fec3fcea5258270ec |
"""
Explore integration of rotationally symmetric shapes
"""
from __future__ import print_function, division
import os, sys
sys.path.insert(0, os.path.dirname(os.path.dirname(__file__)))
import numpy as np
from numpy import pi, sin, cos, sqrt, exp, expm1, degrees, log10
from numpy.polynomial.legendre import leggauss... | SasView/sasmodels | explore/symint.py | Python | bsd-3-clause | 5,187 | [
"Gaussian"
] | 424fc51bd5c786a5ce37000243547130af721e5c1a4fc0455048eece5622879f |
"""
Views for user API
"""
from completion.exceptions import UnavailableCompletionData
from completion.utilities import get_key_to_last_completed_block
from django.contrib.auth.models import User # lint-amnesty, pylint: disable=imported-auth-user
from django.contrib.auth.signals import user_logged_in
from django.db ... | eduNEXT/edx-platform | lms/djangoapps/mobile_api/users/views.py | Python | agpl-3.0 | 15,353 | [
"VisIt"
] | 647d7b19af18947bbeda79fb01b576f4aa56995a31a47ee3a975842fa4b8f8d8 |
#!/usr/bin/python
# Copyright 2017 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agr... | google/myelin-acorn-electron-hardware | fx2_tube_cartridge_adapter/pcb/fx2_tube_cartridge_adapter.py | Python | apache-2.0 | 18,242 | [
"Elk"
] | 8e7d724819f7e3a5df281609b6cfd7429f2f52ab12caa90d629f036f97fe5747 |
"""
Test functions for multivariate normal distributions.
"""
from __future__ import division, print_function, absolute_import
from numpy.testing import (assert_allclose, assert_almost_equal,
assert_array_almost_equal, assert_equal,
assert_raises, run_module_suite... | ales-erjavec/scipy | scipy/stats/tests/test_multivariate.py | Python | bsd-3-clause | 30,527 | [
"Gaussian"
] | 10506ab6d578bee9f6d2b35f504e95892c3e5d0e39a7d2898788cdece96c6ff3 |
"""
Calculate driving_force due to ZPF tielines.
The general approach is similar to the PanOptimizer rough search method.
1. With all phases active, calculate the chemical potentials of the tieline
endpoints via ``equilibrium`` calls. Done in ``estimate_hyperplane``.
2. Calculate the target chemical potentials, wh... | PhasesResearchLab/ESPEI | espei/error_functions/zpf_error.py | Python | mit | 21,071 | [
"pycalphad"
] | 8b48aac3431f6b934ac3da5a5e7e29c535d51652e8be7c6e013ae5e419deb323 |
#!/usr/bin/env python
# =============================================================================================
# MODULE DOCSTRING
# =============================================================================================
"""
Parameter handlers for the SMIRNOFF force field engine
This file contains standar... | open-forcefield-group/openforcefield | openff/toolkit/typing/engines/smirnoff/parameters.py | Python | mit | 238,850 | [
"Amber",
"OpenFF Toolkit",
"OpenMM"
] | 92e3f2cae1349d976494e58f0d3df6c268e444f45d812f7ecd7f99d70b89e083 |
#!/usr/bin/env python
import logging
import os.path
import pysam
import sys
def get_chromosomes_info(bam_path):
# Check if there is an index file, create one if there isn't
if not os.path.isfile(bam_path + ".bai"):
pysam.index(bam_path)
logging.info('No BAM index file was found, new index was... | BroadPeaksBioinf/BroadPeaks | BroadPeaks1/pre_counting.py | Python | gpl-2.0 | 4,543 | [
"pysam"
] | 49f4099a1ef8d6e49510ced5a7dce1acfde268a8eeec4639bd157f9bb52e7d25 |
##
# Copyright 2012-2016 Ghent University
#
# This file is part of EasyBuild,
# originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),
# with support of Ghent University (http://ugent.be/hpc),
# the Flemish Supercomputer Centre (VSC) (https://www.vscentrum.be),
# Flemish Research Foundation (F... | wpoely86/easybuild-framework | test/framework/modules.py | Python | gpl-2.0 | 34,083 | [
"NetCDF"
] | 965adf62c82293c3b2b5ce98c2fcefb00c65d3788270d1095b488f01026fb0a1 |
"""
Convenience routines for performing common operations.
@since: 0.28
"""
# Copyright (C) 2009, Thomas Leonard
# See the README file for details, or visit http://0install.net.
import os, sys, logging
from zeroinstall import support
from zeroinstall.support import tasks
def get_selections_gui(iface_uri, gui_args, t... | dabrahams/zeroinstall | zeroinstall/helpers.py | Python | lgpl-2.1 | 4,165 | [
"VisIt"
] | 3868e47d1346f2e4dadc62c901323a7b0627fa78fc1f2b810a36cda1c676ab74 |
# Copyright 2012 Patrick Varilly
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is di... | patvarilly/uwham | test_uwham.py | Python | gpl-3.0 | 2,528 | [
"Gaussian"
] | 2093689c67829ae78af0db405256293f33af8798f20b88ae3e164e3eea5079fd |
# proxy module
from __future__ import absolute_import
from mayavi.scripts.mayavi2 import *
| enthought/etsproxy | enthought/mayavi/scripts/mayavi2.py | Python | bsd-3-clause | 91 | [
"Mayavi"
] | 35548ef7bcc730852fdad56f64bfa28b43ba1fdad8f5a1601c66c90f1386225e |
from PIL import Image
from pyimage import PyImage
import numpy as np
class GaussPyramid(object):
'''This class represent a gaussian pyramid of a given image. It contains
an array of PyImage instances, where the higher the index, the deeper you
are in the pyramid; and also an array of loss information, s... | Thurler/imgprocess | gausspyramid.py | Python | gpl-3.0 | 5,999 | [
"Gaussian"
] | f6e79bb25845de80b59d43b6ba710470c3dbc8f0dbddf33306579970a55172e2 |
AGENTS = [
"Avant Browser/1.2.789rel1 (http://www.avantbrowser.com)",
"Mozilla/5.0 (Windows; U; Windows NT 6.1; en-US) AppleWebKit/532.5 (KHTML, like Gecko) Chrome/4.0.249.0 Safari/532.5",
"Mozilla/5.0 (Windows; U; Windows NT 5.2; en-US) AppleWebKit/532.9 (KHTML, like Gecko) Chrome/5.0.310.0 Safari/532.9",
... | carpedm20/hali | spider/spider/agents.py | Python | bsd-3-clause | 48,876 | [
"Galaxy"
] | f3e40c15260a850e74f88b62f7f823907540b51973b9a36ec7b985d78f1137df |
#!/usr/bin/env python
import argparse
import logging
logging.basicConfig(level=logging.INFO)
def filter_blast(blast_results, top_n=5):
id_counts = {}
for line in blast_results:
# evalue = line.split('\t')[10]
id = line.split("\t")[0]
if id in id_counts:
id_counts[id] += 1
... | TAMU-CPT/galaxy-tools | tools/blast/cpt_blast_filter.py | Python | gpl-3.0 | 765 | [
"BLAST"
] | 09ae0b9ffaa3c073ad41b76ca9245be79b8b3c553d22746dab71ce9732cc0d68 |
#!/usr/bin/env python
import numpy
import argparse
import os
import math
from Scientific.IO import NetCDF
def main():
parser = argparse.ArgumentParser(
prog="gaussian_bump",
description="""Create a Gaussian bump in a netcdf file"""
)
parser.add_argument(
'-v',
... | adamcandy/QGIS-Meshing | tests/support_files/gaussian_bump.py | Python | lgpl-2.1 | 3,191 | [
"Gaussian",
"NetCDF"
] | 766a13549f0f0eb3684dc4a9eb2d705e39728298265988b413b943ab32c93221 |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2005-2012 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU Lesser General Public License as published by
## the Free Softw... | tiagocardosos/stoq | stoqlib/domain/account.py | Python | gpl-2.0 | 20,945 | [
"VisIt"
] | 8664683a47d98f4bc1d04e9438eed6a7928aedfa71a6888b7e04111b891fbe9e |
"""Plugin docstring.
"""
__version__ = '0.1'
__author__ = 'Psi4 Developer'
# Load Python modules
from .pymodule import *
# Load C++ plugin
import os
plugdir = os.path.split(os.path.abspath(__file__))[0]
#sofile = plugdir + '/' + os.path.split(plugdir)[1] + '.so'
#psi4.plugin_load(sofile)
| CDSherrill/psi4 | tests/psithon2/psiaux1/myplugin1/__init__.py | Python | lgpl-3.0 | 294 | [
"Psi4"
] | 97e24ada265c62682925ad0b6ad1f66bacaa89223e147a17d38474310fb708bc |
# -*- coding: utf-8 -*-
#
# Copyright (c) 2016, the cclib development team
#
# This file is part of cclib (http://cclib.github.io) and is distributed under
# the terms of the BSD 3-Clause License.
"""Test logfiles with (non)linear response output in cclib"""
import os
import unittest
import numpy
__filedir__ = os.... | Schamnad/cclib | test/data/testPolar.py | Python | bsd-3-clause | 1,986 | [
"cclib"
] | e2e120e91898746eb4a683c7fd70025c00f444233a6d710e1e90a65e1b28d0ed |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | mfherbst/spack | var/spack/repos/builtin/packages/ncl/package.py | Python | lgpl-2.1 | 10,721 | [
"NetCDF"
] | 3816543c17ee018c51560cfa0530eb602c7ba1a0149f707964aedd6804816896 |
"""
Module to call mcsqs, distributed with AT-AT
https://www.brown.edu/Departments/Engineering/Labs/avdw/atat/
"""
import os
import tempfile
import warnings
from pathlib import Path
from subprocess import Popen, TimeoutExpired
from collections import namedtuple
from typing import Dict, List, Optional, Union
from mont... | gmatteo/pymatgen | pymatgen/command_line/mcsqs_caller.py | Python | mit | 9,898 | [
"pymatgen"
] | 729340f6838d5b49f0615dde230d32b8825ff1427aa0ea3fa6e2fae2ad20fddd |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# vim: ai ts=4 sts=4 et sw=4 nu
from __future__ import (unicode_literals, absolute_import,
division, print_function)
import logging
from django.utils import timezone
from snisi_sms.reply import SMSReply
from snisi_core.models.Providers import Prov... | yeleman/snisi | snisi_cataract/sms_handlers.py | Python | mit | 8,413 | [
"VisIt"
] | 856858e30147eb3a7f9ac6757c32f6088d07573d2b43229aba52163c5686f2f1 |
"""Tests performing linter-like checks"""
import ast
from os.path import dirname, join
from subprocess import check_output
# Root of the repository. Note that this is relative to this file,
# so if this file is moved, this may need to be changed:
source_root = dirname(dirname(__file__))
def test_logger_format_stri... | CCI-MOC/haas | tests/custom_lint.py | Python | apache-2.0 | 3,640 | [
"VisIt"
] | 55a74811a3ba6a88cf2465c60868289957eb5bf8aa771e755972b175fe556f57 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import collections
from pycparser import CParser
from pycparser import c_ast
def extractTypeAndName(n, defaultName=None):
if isinstance(n, c_ast.EllipsisParam):
return ('int', 0, 'vararg')
t = n.type
d = 0
while isinstance(t, c_ast.PtrDecl) or ... | anthraxx/pwndbg | pwndbg/funcparser.py | Python | mit | 2,418 | [
"VisIt"
] | 24e58d0510fa87e603f3bf7aff094d42863cb470f9b0d28e72cf2032ab573cf3 |
#!/usr/bin/env python
""" Create a DIRAC transfer/replicateAndRegister request to be executed
by the DMS Transfer Agent
"""
__RCSID__ = "$Id$"
import os
from hashlib import md5
import time
from DIRAC.Core.Base import Script
from DIRAC.Core.Utilities.List import breakListIntoChunks
Script.setUsageMessage( '\n'.joi... | Sbalbp/DIRAC | DataManagementSystem/scripts/dirac-dms-create-replication-request.py | Python | gpl-3.0 | 3,404 | [
"DIRAC"
] | 6ec5fbdf818d604d09acb30b6f9ed1fa4de2dbf200a38fd6b915a75e982058d0 |
# Copyright 2018 The TensorFlow Probability Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... | tensorflow/probability | tensorflow_probability/python/experimental/mcmc/pnuts_test.py | Python | apache-2.0 | 45,484 | [
"Gaussian"
] | 670afe1b2bb008ee789f51d14a9bdce8ad147230d40033e38c8cb65180a2ee83 |
#! /usr/bin/env python
# Author: Andrew Jewett (jewett.aij at g mail)
# License: 3-clause BSD License (See LICENSE.TXT)
# Copyright (c) 2017, California Institute of Technology
# All rights reserved.
"""
This standalone python script can be used to convert force-field data
in FRC files (a.k.a. "MSI", "Accelrys", "BI... | quang-ha/lammps | tools/moltemplate/moltemplate/force_fields/convert_MSI_files_to_LT_files/msifrc2lt.py | Python | gpl-2.0 | 234,432 | [
"CHARMM",
"LAMMPS",
"VisIt"
] | 9b302abb35dc07e4b1b05e6b8ba1c91f9021ca715eceeb41c98c6009d6d92bed |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=120 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# ------------------------------------------------------... | marmyshev/transitions | openlp/plugins/bibles/forms/editbibledialog.py | Python | gpl-2.0 | 10,020 | [
"Brian"
] | 692720cb09bb87680664884a30e6be82296182c0bdd9c111c0c9b1fda7923e90 |
"""
Application-class that implements pyFoamConvertMixingPlaneToNewSyntax.py
Adjust the mixingPlane interface definition in the boundary
file to the latest supported syntax.
Author:
Martin Beaudoin, Hydro-Quebec, 2012. All rights reserved
"""
from PyFoamApplication import PyFoamApplication
from PyFoam.RunDiction... | Unofficial-Extend-Project-Mirror/openfoam-extend-foam-extend-3.1 | ThirdParty/LocalDev/Hydro-Quebec/PyFoam/ConvertMixingPlaneBoundaryToNewSyntax.py | Python | gpl-3.0 | 8,738 | [
"Brian"
] | 576cc0f4a0fb5677b4b3f52e1046c696abcdd98cb6f9e0f606132e0090cb4c74 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2022 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | psi4/psi4 | psi4/driver/procrouting/wrappers_cfour.py | Python | lgpl-3.0 | 36,339 | [
"CFOUR",
"Psi4"
] | 5491964fc66758d5c9f2ab33ffe32e746d4d1001dc0112cb0743491b12482547 |
#!/usr/bin/python
#
# Copyright 2007 Google Inc.
# Licensed to PSF under a Contributor Agreement.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICE... | mozilla/stoneridge | wpr/third_party/ipaddr/ipaddr_test.py | Python | mpl-2.0 | 50,368 | [
"FEFF"
] | e82e46a274e313ae19036614f0f5ab4dc8c1c7a55564e043f3f1630a237b4c47 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
""" Bunch is a subclass of dict with attribute-style access.
>>> b = Bunch()
>>> b.hello = 'world'
>>> b.hello
'world'
>>> b['hello'] += "!"
>>> b.hello
'world!'
>>> b.foo = Bunch(lol=True)
>>> b.foo.lol
True
>>> b.foo is b['... | Nexenta/s3-tests | virtualenv/lib/python2.7/site-packages/bunch/__init__.py | Python | mit | 13,203 | [
"Brian"
] | 1517e0070937d695bdb8fc3391cecf30eeabb2386dd42f91f2076429b1646388 |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | BackupTheBerlios/espressopp | src/interaction/unittest/PTestSoftCosine.py | Python | gpl-3.0 | 2,031 | [
"ESPResSo"
] | 391e172d7227991397d4f7049ca4ad6df63b0a8399f702a70cae8c25927f0e6e |
# vim: tabstop=4 shiftwidth=4 softtabstop=4
# Copyright 2011 OpenStack Foundation
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apach... | sacharya/nova | nova/tests/api/openstack/test_xmlutil.py | Python | apache-2.0 | 33,261 | [
"VisIt"
] | 7483912ce0ea6341c76809c30e8ffdfd6866837583b889d28946356ad97645da |
from bsPlugins import *
from bein import execution
from bbcflib.track import track, convert
from bbcflib.mapseq import bam_to_density
from bbcflib.gfminer.stream import merge_scores
import os, sys, pysam
__requires__ = ["pysam"]
output_opts=["sql", "bedGraph", "bigWig"]
meta = {'version': "1.0.0",
'author': ... | bbcf/bsPlugins | bsPlugins/Bam2Density.py | Python | gpl-3.0 | 11,177 | [
"pysam"
] | dd99dfd20f8491a26bdf05d88ee7eab3a57d2f1e89bbc44f243697e7d9818313 |
import vtk
from vtk.util.colors import *
cubeSource = vtk.vtkCubeSource()
cubeSource.SetBounds(-5, 5, -5, 5, -5, 5)
ee = vtk.vtkExtractEdges()
ee.SetInput(cubeSource.GetOutput())
cubeTube = vtk.vtkTubeFilter()
cubeTube.SetRadius(0.1)
cubeTube.SetNumberOfSides(20)
cubeTube.UseDefaultNormalOn()
cubeTube.SetDefaultNorm... | zhangfangyan/devide.vtkdevide | Examples/Rendering/Python/pbtf.py | Python | bsd-3-clause | 4,366 | [
"VTK"
] | d0a014c2ecfa38929488956cffb25d0a906427b36726ebcb9e51a00e1f46efa6 |
import h5py
import numpy as np
import pytest
import pysisyphus
from pysisyphus.calculators.OverlapCalculator import OverlapCalculator
from pysisyphus.calculators.PySCF import PySCF
from pysisyphus.helpers import geom_loader
from pysisyphus.helpers_pure import describe
from pysisyphus.init_logging import init_logging
f... | eljost/pysisyphus | tests/test_overlap_calculator/test_overlap_calculator.py | Python | gpl-3.0 | 3,247 | [
"Jmol",
"PySCF"
] | 55b0ac84dce3986195ab6cfb740b0016ad9778b13738aadea2a3bc62442db689 |
# Copyright (C) 2015-2020 The Software Heritage developers
# See the AUTHORS file at the top-level directory of this distribution
# License: GNU Affero General Public License version 3, or any later version
# See top-level LICENSE file for more information
from collections import defaultdict
import functools
from fun... | SoftwareHeritage/swh-web-ui | swh/web/api/apidoc.py | Python | agpl-3.0 | 17,293 | [
"VisIt"
] | 46cdce01677145b7a7f6bc1bad199cdf136502086a2044a619161ed1e1a609f6 |
from direct.directnotify import DirectNotifyGlobal
from direct.fsm import StateData
import CogHQLoader
from toontown.toonbase import ToontownGlobals
from direct.gui import DirectGui
from toontown.toonbase import TTLocalizer
from toontown.toon import Toon
from direct.fsm import State
from toontown.coghq import BossbotHQ... | ToontownUprising/src | toontown/coghq/BossbotCogHQLoader.py | Python | mit | 5,759 | [
"VisIt"
] | 8c65d9d09ddc5c7601c633dbfaadbf8c784310b59f93764049aeade5f7ad43cc |
import numpy as np
from .deriv import pderiv3D
__all__ = ['avg_eqlat', 'epflux_eddyterms', 'epflux_all', 'theta']
def avg_equivlat(in_field, pv_field, n_lon, n_lat):
"""
Average a 2-D input field along equivalent latitude bands
using global 2-D field of potential vorticity.
Equivalent latitu... | yl238/boa | boa/science/dynamics.py | Python | mit | 4,113 | [
"NetCDF"
] | dd6099430015e7674f58d306f62f102ec9cd15dc2146d51be1efec23b7ab7070 |
from __main__ import vtk, qt, ctk, slicer
import string
class LabelStatisticsLogic:
"""This Logic is copied from the Label Statistics Module -Steve Pieper (Isomics)"""
"""Implement the logic to calculate label statistics.
Nodes are passed in as arguments.
Results are stored as 'statistics' instance va... | vnarayan13/Slicer-OpenCAD | SegmentCAD/LabelStatisticsLogic/LabelStatisticsLogic.py | Python | mit | 5,235 | [
"VTK"
] | 8d1b1020bd59f39852eccc8120dbb4860514b3262e2d2261d23ce12ab3603c78 |
#!/usr/bin/python
# Handle unicode encoding
import collections
import csv
import errno
import getpass
import itertools
import locale
import os
import platform
import threading
import time
import shlex
import socket
import sys
import tempfile
import urllib2
import re
import fileinput
from optparse import OptionParser... | haanme/FinnBrain | dockerfiles/fsl_anaconda3/fslinstaller.py | Python | mit | 102,918 | [
"VisIt"
] | 95daa0b2d269829db98e365b5357b83f5eccd6946321c69f4d69962503c3e24f |
# texttable - module for creating simple ASCII tables
# Copyright (C) 2003-2015 Gerome Fournier <jef(at)foutaise.org>
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.... | amisrs/one-eighty | angular_flask/lib/python2.7/site-packages/texttable.py | Python | mit | 19,664 | [
"Brian"
] | 0aefac99829d767cb17bc984f0abeb131239dbda012f910a492d8976b3313dd0 |
"""
Title: Vector-Quantized Variational Autoencoders
Author: [Sayak Paul](https://twitter.com/RisingSayak)
Date created: 2021/07/21
Last modified: 2021/07/21
Description: Training a VQ-VAE for image reconstruction and codebook sampling for generation.
"""
"""
In this example, we will develop a Vector Quantized Variatio... | keras-team/keras-io | examples/generative/vq_vae.py | Python | apache-2.0 | 20,195 | [
"Gaussian"
] | a6cff547fab29d2786729ff1c2bd1ccf17d742c2dd31b43de6141460f90492ca |
# -*- coding: utf-8 -*-
# Author: Aziz Köksal
class NodeVisitor:
def visit(self, node):
""" Calls a visit method for this node. """
method = getattr(self, node.__class__.visit_name, self.default_visit)
return method(node)
def default_visit(self, node):
""" Calls visit() on the subnodes of this nod... | SiegeLord/dil | scripts/dil/visitor.py | Python | gpl-3.0 | 367 | [
"VisIt"
] | c62ff03bbb79d55fe5838889cbfc6053b485d352917927c9fa21c44bc99082ad |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# Copyright: (c) 2014, Ruggero Marchei <ruggero.marchei@daemonzone.net>
# Copyright: (c) 2015, Brian Coca <bcoca@ansible.com>
# Copyright: (c) 2016-2017, Konstantin Shalygin <k0ste@k0ste.ru>
# Copyright: (c) 2017, Ansible Project
# GNU General Public License v3.0+ (see COPYING... | hogarthj/ansible | lib/ansible/modules/files/find.py | Python | gpl-3.0 | 14,854 | [
"Brian"
] | 637f707d77e5488ee729e135a21a5e767bf09e3600bc92bc95a18c72f4a1601c |
import sys
import hashlib
import pytest
import numpy as np
from numpy.linalg import LinAlgError
from numpy.testing import (
assert_, assert_raises, assert_equal, assert_allclose,
assert_warns, assert_no_warnings, assert_array_equal,
assert_array_almost_equal, suppress_warnings)
from numpy.random import G... | abalkin/numpy | numpy/random/tests/test_generator_mt19937.py | Python | bsd-3-clause | 101,044 | [
"Gaussian"
] | 0df91a110e1c67beaf94b75dcd1bf58b2e535301262aa319dbd239225d2cae31 |
from __future__ import (absolute_import, division, print_function)
__metaclass__ = type
import json
import os
import os.path
import re
import sys
import warnings
from collections import defaultdict
try:
from setuptools import setup, find_packages
from setuptools.command.build_py import build_py as BuildPy
... | s-hertel/ansible | setup.py | Python | gpl-3.0 | 15,629 | [
"Galaxy"
] | 53fc649075c13ba80295f1e4cd129b484934a3c6a15d055200eda15f73a5431d |
#!/usr/bin/python
# Image querying script written by Tamara Berg,
# and extended heavily James Hays
# Modified a little bit by Haozhi Qi
# 9/26/2007 added dynamic time slices to query more efficiently.
# 8/18/2008 added new fields and set maximum time slice.
# 8/19/2008 this is a much simpler function which gets ALL ... | Oh233/Flicrawler | query_imgs/image_crawler.py | Python | mit | 7,857 | [
"VisIt"
] | f87994b3d19c9394c9679478ba2bb015c8ceee9682600d119b30397554f32001 |
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