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# (c) 2012, Michael DeHaan <michael.dehaan@gmail.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any lat... | wenottingham/ansible | lib/ansible/template/safe_eval.py | Python | gpl-3.0 | 4,604 | [
"VisIt"
] | 3d563d925331c92d62bf4b4cf596142643cb4d8eaaea0e73c1da846a1eb6cf3b |
"""
Module to measure spectral cross-correlation...
"""
import numpy as np
import lmfit
def fit_lag(arr1,arr2,kind='linear'):
if arr1.size != arr2.size:
raise ValueError("Size mismatch")
def mychi2(pars):
lag = pars['lag'].value
return chi2(arr1,arr2,lag)
fitpars = lmfit.... | ufoym/agpy | agpy/cross_correlation.py | Python | mit | 7,294 | [
"Gaussian"
] | 05e918a77a6d73ff2b7547620df0f5a3c26dfb62685526f89b85030bd3862193 |
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------------------------------... | gregcaporaso/scikit-bio | skbio/sequence/_dna.py | Python | bsd-3-clause | 12,736 | [
"scikit-bio"
] | 5c5f6ca61ec81fcc4080a7458e2e66163803ef9150a8c5a2ce212b4bb6c28fba |
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# In this example, an image is centered at (0,0,0) before a
# rotation is applied to ensure that the rotation occurs about
# the center of the image.
reader = vtk.vtkPNGReade... | hlzz/dotfiles | graphics/VTK-7.0.0/Imaging/Core/Testing/Python/ResliceInformationInput.py | Python | bsd-3-clause | 1,137 | [
"VTK"
] | e93f6799ac199816ae54b8b262297ecdd06e49a06e737c2421c8d65237371a1b |
from direct.directnotify import DirectNotifyGlobal
from direct.fsm import StateData
import CogHQLoader
from toontown.toonbase import ToontownGlobals
from direct.gui import DirectGui
from toontown.toonbase import TTLocalizer
from toontown.toon import Toon
from direct.fsm import State
from direct.actor.Actor import Actor... | silly-wacky-3-town-toon/SOURCE-COD | toontown/coghq/SellbotCogHQLoader.py | Python | apache-2.0 | 12,750 | [
"VisIt"
] | 1a8a10833b8b0903acb837f4438f61ddebd2edc8abedda0558e0bc99a511969c |
""" SSH (Virtual) Computing Element
For a given IP/host it will send jobs directly through ssh
**Configuration Parameters**
Configuration for the SSHComputingElement submission can be done via the configuration system.
BatchSystem:
Underlying batch system that is going to be used to orchestrate executable files.... | ic-hep/DIRAC | src/DIRAC/Resources/Computing/SSHComputingElement.py | Python | gpl-3.0 | 32,794 | [
"DIRAC"
] | 3a6c6bdaace8debf6ef41fb9baddf3548cf8949f8b7345f45011425a50c3208b |
# -*- coding: utf-8 -*-
# Form implementation generated from reading ui file '/home/yc/code/calibre/calibre/src/calibre/gui2/convert/txt_input.ui'
#
# Created: Thu Oct 25 16:54:55 2012
# by: PyQt4 UI code generator 4.8.5
#
# WARNING! All changes made in this file will be lost!
from PyQt4 import QtCore, QtGui
tr... | yeyanchao/calibre | src/calibre/gui2/convert/txt_input_ui.py | Python | gpl-3.0 | 5,620 | [
"VisIt"
] | edbb56d9c5249f65164e4bb2c93ed12a9bdfbb170764646bc2f0ea6da7d2a346 |
# ----------------------------------------------------------------------------
# Copyright 2015 Nervana Systems Inc.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.o... | Bam4d/neon | tests/test_branch_layer.py | Python | apache-2.0 | 5,155 | [
"Gaussian"
] | e4afefa893183dd370116aefb00d8c975ac73cc804981d89e3a2f9b36baf2342 |
# Copyright (c) 2006-2011, 2013-2014 LOGILAB S.A. (Paris, FRANCE) <contact@logilab.fr>
# Copyright (c) 2014-2016 Claudiu Popa <pcmanticore@gmail.com>
# Copyright (c) 2014 Google, Inc.
# Copyright (c) 2015-2016 Cara Vinson <ceridwenv@gmail.com>
# Licensed under the LGPL: https://www.gnu.org/licenses/old-licenses/lgpl-2... | arju88nair/projectCulminate | venv/lib/python3.5/site-packages/astroid/manager.py | Python | apache-2.0 | 12,332 | [
"VisIt"
] | 6ee26a1d88f3dd42783a5c2db0a5285e51e7f13ff1f6f87b422f3a09e6976905 |
#!/usr/bin/env python
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# ---------------------... | Achuth17/scikit-bio | setup.py | Python | bsd-3-clause | 4,506 | [
"scikit-bio"
] | 4f9b94906f77281f1557d00bae615ebdc4bc4e3fcbf22dbccc7b57eb825da54f |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
Works for Abinit:
"""
from __future__ import unicode_literals, division, print_function
import os
import shutil
import time
import abc
import collections
import numpy as np
import six
import copy
from six.... | aykol/pymatgen | pymatgen/io/abinit/works.py | Python | mit | 53,283 | [
"ABINIT",
"Gaussian",
"NetCDF",
"pymatgen"
] | bd20da71957810dbb83240aed91f4243fee3754a77d913e4aeb8e82b6813530f |
#### PATTERN | DE | INFLECT ##############################################
# -*- coding: utf-8 -*-
# Copyright (c) 2012 University of Antwerp, Belgium
# Author: Tom De Smedt <tom@organisms.be>
# License: BSD (see LICENSE.txt for details).
##########################################################################
# Reg... | shubhangiKishore/pattern | pattern/text/de/inflect.py | Python | bsd-3-clause | 32,013 | [
"ASE"
] | d897b4bec9d89106e1fa68a685559df2f7ef0951c015edce18c186e9dc41885a |
from crystal_dashboard.dashboards.crystal.projects import tabs as projects_tabs
from django.utils.translation import ugettext_lazy as _
from horizon import tabs
class IndexView(tabs.TabbedTableView):
tab_group_class = projects_tabs.ProjectsTabs
template_name = 'crystal/projects/index.html'
page_title = _(... | Crystal-SDS/dashboard | crystal_dashboard/dashboards/crystal/projects/views.py | Python | gpl-3.0 | 457 | [
"CRYSTAL"
] | 20204a2a1211f4b74fc495b2596bf4910cd6f26e955f645815e2f142c0a1d6f7 |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4 fileencoding=utf-8
#
# MDAnalysis --- http://www.mdanalysis.org
# Copyright (c) 2006-2016 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#
... | alejob/mdanalysis | testsuite/MDAnalysisTests/core/test_atomselections.py | Python | gpl-2.0 | 35,692 | [
"Amber",
"MDAnalysis",
"NAMD"
] | d706e3808cae7ac2dfdf9a77b5037c87521c6b3507b01de08451d9dc8f18f4ac |
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Upp(CMakePackage):
"""
The Unified Post Processor (UPP) software package is a software... | LLNL/spack | var/spack/repos/builtin/packages/upp/package.py | Python | lgpl-2.1 | 1,747 | [
"NetCDF"
] | d29fab6885a84fc1bcc28b74ad55a310836adb6d7c3120450cd9e41351c6e628 |
from django.db import models
from mezzanine.utils.models import AdminThumbMixin
from mezzanine.utils.models import upload_to
from mezzanine.core.fields import RichTextField
from django.contrib.auth.models import User
from mezzanine.core.models import Displayable, Orderable, RichText, Ownable,\
Slugged
from django.u... | orlenko/sfpirg | sfpirgapp/models.py | Python | bsd-2-clause | 21,029 | [
"VisIt"
] | ba7931d4ada477f40fa202a309466237d46547d37e27fa26aaf62d8a5b02f6fd |
import numpy as np
import matplotlib.pyplot as plt
from util import utils
import mpfit
import scipy.optimize as optimize
from scipy import pi,sqrt,exp
from scipy.special import erf
import scipy.integrate as integrate
#This program tries to fit the white dwarf and bright spot component of the light curve. The bright sp... | bmazin/ARCONS-pipeline | examples/Pal2012-sdss/DwarfBrightSpotFit.py | Python | gpl-2.0 | 4,811 | [
"Gaussian"
] | 74da7a6a85d371c173dd2ab42a5199d622a61696a8ac31b9807cd63c3dc3d486 |
"""Forest of trees-based ensemble methods
Those methods include random forests and extremely randomized trees.
The module structure is the following:
- The ``BaseForest`` base class implements a common ``fit`` method for all
the estimators in the module. The ``fit`` method of the base ``Forest``
class calls the ... | eickenberg/scikit-learn | sklearn/ensemble/forest.py | Python | bsd-3-clause | 54,513 | [
"Brian"
] | 8f7273f67a4224423cfe025a3b214d40c7babf3c80e05d2b93df77e1c076de12 |
# ============================================================================
#
# Copyright (C) 2007-2012 Conceptive Engineering bvba. All rights reserved.
# www.conceptive.be / project-camelot@conceptive.be
#
# This file is part of the Camelot Library.
#
# This file may be used under the terms of the GNU General... | jeroendierckx/Camelot | camelot/view/action_steps/update_progress.py | Python | gpl-2.0 | 3,204 | [
"VisIt"
] | 8f692df7420aba0bcbd887ae3227061aa454ea7968ba19960fbcfe0072df4085 |
from rpl.tools.api import test_bench_api
__author__ = 'ab27'
import json, logging, os, sys
import _winreg
import numpy as np
import matplotlib.pyplot as plt
from rpl.tools.api import test_bench_api as tba
import utils.part_info as pinf
import matplotlib.pyplot as plt
from matplotlib.tri import Triangul... | pombredanne/metamorphosys-desktop | metamorphosys/META/analysis_tools/PYTHON_RICARDO/output_closures/scripts/hatch_visualization.py | Python | mit | 10,391 | [
"Mayavi"
] | 12e8b0f980de3137020ae8bee4a4a404e1fc6c0ea4690f26bd8505be92951e70 |
"""Utilities for writing code that runs on Python 2 and 3"""
# Copyright (c) 2010-2014 Benjamin Peterson
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including with... | soerendip42/rdkit | rdkit/six.py | Python | bsd-3-clause | 23,870 | [
"RDKit"
] | 66b15d6535fdf1abaa7332c5604a45dbaaf1b2fa624393d80d96dd9eb7867768 |
import psycopg2
import Image, ImageDraw
import random
from visual import *
#-------- database code ------------
db = psycopg2.connect(host='csr-dyn-24.mit.edu',user='mwa',password='BowTie')
curs = db.cursor()
curs.execute('select tile_id,tile_pos_east,tile_pos_north from tile_position')
c = curs.fetchall(... | ryandougherty/mwa-capstone | MWA_Tools/mwapy/obssched/extras/tilestat.py | Python | gpl-2.0 | 1,330 | [
"Bowtie"
] | 64744cdf98efc7a16652e33a24038dc1ecab34590a83f3614b1034fb98cfe9c1 |
import numpy as np
import logging
import random
import matplotlib.pyplot as plt
from matplotlib import rcParams
rcParams['font.family'] = 'DejaVu Sans'
import seaborn as sns
import datetime
sns.set_style("whitegrid", {'axes.grid' : False})
def gaussian(filter_size=[16,16], offset=[0,0]):
"""
Create a 2D Gauss... | huangziwei/pyMF3 | pymf3/datasets/_subunits.py | Python | mit | 12,559 | [
"Gaussian"
] | fa5f14d1e08540ed757b3df42dfa9c689231420b43e1c476fdf17a0a80f6028e |
#! /usr/bin/env python
#
# update_po - a gramps tool to update translations
#
# Copyright (C) 2006-2006 Kees Bakker
# Copyright (C) 2006 Brian Matherly
# Copyright (C) 2008 Stephen George
# Copyright (C) 2012
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of t... | Forage/Gramps | data/man/update_man.py | Python | gpl-2.0 | 6,354 | [
"Brian"
] | d1be9a98ed21cd4a7f51eb3f4b000350caf07797b07e4cc46afb85e58d9a5e02 |
#!/usr/bin/env python
"""
This is a simple installation script for casual users of pymatgen who simply
plan to use pymatgen as a basic analysis library and is not planning to
develop on it. This script should work on most Linux and Mac systems that
have Python 2.7+ installed and setuptools installed. These are the onl... | yanikou19/pymatgen | docs/_static/pmg_install.py | Python | mit | 6,589 | [
"ASE",
"pymatgen"
] | fba908d7253988de821258792ef205af956012566bc5169f726755b01c670bc4 |
import sys
from cStringIO import StringIO
from time import time,sleep, gmtime
from django.conf import settings
from django import http
from django.core.mail import mail_admins
from django.core.exceptions import SuspiciousOperation
from django.dispatch import Signal
from userdata import UserData
from theapps.superviso... | thepian/theapps | theapps/supervisor/middleware.py | Python | gpl-3.0 | 7,573 | [
"VisIt"
] | 638e102d758ae84f75e23ed53af4333aeb8f8456b94e88c6107ed8c3eb379f7f |
from __future__ import print_function
import sys
import random
import os
import numpy as np
import scipy
import math
from scipy import stats
from builtins import range
import time
sys.path.insert(1, "../../../")
import h2o
from tests import pyunit_utils
from h2o.estimators.glm import H2OGeneralizedLinearEstimator
fr... | mathemage/h2o-3 | h2o-py/dynamic_tests/testdir_algos/glm/pyunit_glm_gaussian_large.py | Python | apache-2.0 | 64,811 | [
"Gaussian"
] | b3da5e479bb174f5bd96966fa9450e6c4f6da6be8b255b1d6ddee70f0ed766fd |
# Copyright 2007 by Tiago Antao. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""
This module provides code to work with GenePop.
See http://wbiomed.curtin.edu.au/genepop/ ,... | bryback/quickseq | genescript/Bio/PopGen/GenePop/__init__.py | Python | mit | 7,348 | [
"Biopython"
] | 5f9edfbbe7330c4ad17db731e3b15b0109e6dd80c005dec01754a9cda755c3d9 |
import numpy as np
from ..FileIO import FileIO as psopen
from ...common import pandas
#import pysal_examples
from ... import examples as pysal_examples
import unittest as ut
PANDAS_EXTINCT = pandas is None
class Test_Table(ut.TestCase):
def setUp(self):
self.filehandler = psopen(pysal_examples.get_path('... | sjsrey/pysal_core | pysal_core/io/tests/test_Tables.py | Python | bsd-3-clause | 1,188 | [
"COLUMBUS"
] | 1b51d7fe05ab0b203cd04aac287bfef827f121d3d76be907b933c59eacedd067 |
# -*- coding: utf-8 -*-
#
# connections.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License, or... | hesam-setareh/nest-simulator | topology/doc/user_manual_scripts/connections.py | Python | gpl-2.0 | 18,562 | [
"Gaussian"
] | 021635a1ae20c557b80bba0a5784aaabe592046d98acad0c4f57579aef976384 |
""" Tornado-based HTTPs JobManager service.
"""
from DIRAC import gLogger
from DIRAC.Core.Tornado.Server.TornadoService import TornadoService
from DIRAC.WorkloadManagementSystem.Service.JobManagerHandler import JobManagerHandlerMixin
sLog = gLogger.getSubLogger(__name__)
class TornadoJobManagerHandler(JobManagerHan... | DIRACGrid/DIRAC | src/DIRAC/WorkloadManagementSystem/Service/TornadoJobManagerHandler.py | Python | gpl-3.0 | 518 | [
"DIRAC"
] | e3e181345604e679dd4ef08d0ac15bd1f0947b18b0a932bdb49048d1c217e392 |
#!/usr/bin/env python
"""Script to run Selenium2Library acceptance tests.
Tests are executed using Robot Framework and results verified automatically
afterwards using `robotstatuschecker` tool. The tool can be installed using
`pip install robotstatuschecker` and more information about it can be found
from: https://git... | SergiuTudos/Selenium2Library | test/run_tests.py | Python | apache-2.0 | 8,075 | [
"VisIt"
] | e373870e98a1dc0e5ff9ce074cfaf2009e460936675da9e3905cacec9d1d9f55 |
############################################################################
# add field index shelves to flat-file database mechanism;
# to optimize "index only" displays, use classes at end of this file;
# change browse, index, submit to use new loaders for "Index only" mode;
# minor nit: uses single lock file fo... | simontakite/sysadmin | pythonscripts/programmingpython/Internet/Web/PyErrata/AdminTools/dbaseindexed.py | Python | gpl-2.0 | 5,932 | [
"Brian"
] | 0bb55e91f84a1097e626d6115bc80d9516d5bbdb9be6c30f81f41d50edd0b36d |
# -*- coding: utf-8 -*-
'''
Smoothtest
Copyright (c) 2014 Juju. Inc
Code Licensed under MIT License. See LICENSE file.
'''
import rel_imp
rel_imp.init()
import os
from argparse import ArgumentParser, RawDescriptionHelpFormatter
from .base import AutoTestBase
from .Main import Main
from .TestSearcher import TestSearche... | joaduo/smoothtest | smoothtest/autotest/Command.py | Python | mit | 5,599 | [
"VisIt"
] | ef55971453bfe99d1f321206988d953a8921845b058c8c40445d19d02d07436a |
# Copyright 2009, Mark Fassler
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, version 2 of the License.
import logging
import vtk
from jv.jvPaths import *
import xml.etree.ElementTree as ET
... | mfassler/jaivis | jv/xmlReader.py | Python | gpl-2.0 | 41,125 | [
"VTK"
] | c514e115f0edeee10fcb67451e5d6e6e8337a00722b8e12c907de59beafbc02d |
import gym
from gym import spaces
from gym.utils import seeding
def cmp(a, b):
return int((a > b)) - int((a < b))
# 1 = Ace, 2-10 = Number cards, Jack/Queen/King = 10
deck = [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 10, 10, 10]
def draw_card(np_random):
return np_random.choice(deck)
def draw_hand(np_random):
re... | dennybritz/reinforcement-learning | lib/envs/blackjack.py | Python | mit | 4,251 | [
"CASINO"
] | f1a35d2db407d9034d3fe396622025fba467415b05bec4560735ee8c12ba93a3 |
# This code is part of Ansible, but is an independent component.
# This particular file snippet, and this file snippet only, is BSD licensed.
# Modules you write using this snippet, which is embedded dynamically by Ansible
# still belong to the author of the module, and may assign their own license
# to the complete wo... | resmo/ansible | lib/ansible/module_utils/api.py | Python | gpl-3.0 | 4,456 | [
"Brian"
] | 14855dd0feae42b56312a44445c4e84fdb593313ed2229cc9a73acfc9e953de4 |
# Copyright 2004-2008 Roman Yakovenko.
# Distributed under the Boost Software License, Version 1.0. (See
# accompanying file LICENSE_1_0.txt or copy at
# http://www.boost.org/LICENSE_1_0.txt)
"""defines few unrelated algorithms, that works on declarations"""
import types
def declaration_path( decl, with_def... | avaitla/Haskell-to-C---Bridge | pygccxml-1.0.0/pygccxml/declarations/algorithm.py | Python | bsd-3-clause | 11,478 | [
"VisIt"
] | 0194c93850eaae0a2b54c841181878c244a1177528333e30c3af26174a3098d1 |
# -*- coding: utf-8 -*-
"""
Multiple operations on data or modeling results (e.g. aligning, convolution, ...)
Author: R. Lombaert
"""
import collections
from scipy import mean, std, sqrt, log, isfinite
from scipy import array, zeros, arange
from scipy.stats import tmean, tstd
from scipy.optimize import leastsq
from... | robinlombaert/ComboCode | cc/data/Data.py | Python | gpl-3.0 | 18,291 | [
"Gaussian"
] | 14b7984d26e22e6a8c760127ee834e9491a9fac3396c720c631e7610fdd7b84a |
"""
@name: Modules/House/Entertainment/entertainment_util.py
@author: D. Brian Kimmel
@contact: D.BrianKimmel@gmail.com
@copyright: (c) 2019-2020 by D. Brian Kimmel
@license: MIT License
@note: Created on Dec 23, 2019
@summary:
"""
# Import system type stuff
from ruamel.yaml.comments import Commente... | DBrianKimmel/PyHouse | Project/src/Modules/House/Entertainment/entertainment_utility.py | Python | mit | 1,912 | [
"Brian"
] | 2ead3c3373521cf3944526e7d517954acdd171e25cc1ff9c64e19845dd6eed98 |
# Copyright 2000 by Jeffrey Chang. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
import sys
# Add path to Bio
sys.path.append('../..')
"""Code to work with the prosite.doc fi... | Ambuj-UF/ConCat-1.0 | src/Utils/Bio/ExPASy/Prodoc.py | Python | gpl-2.0 | 5,018 | [
"Biopython"
] | 82ca81e79b40908c6ae78277e7b5adb69c1b8f79bf175c838fceb55dba114a23 |
import numpy as np
import theano
import theano.tensor as T
from numpy.testing import assert_array_almost_equal
from smartlearner import views, stopping_criteria, Trainer, tasks
from smartlearner.optimizers import SGD, AdaGrad, Adam, RMSProp, Adadelta
from smartlearner.testing import DummyLoss, DummyBatchScheduler
from... | SMART-Lab/smartlearner | tests/optimizers/tests_optimizers.py | Python | bsd-3-clause | 7,477 | [
"Gaussian"
] | a1a08760956f33e84dd14383abe04d757548b6ebfb124dfefec59575a64d53b9 |
from __future__ import print_function, division
from sympy.core import S, C, sympify
from sympy.core.function import Function, ArgumentIndexError
from sympy.core.logic import fuzzy_and
from sympy.ntheory import sieve
from math import sqrt as _sqrt
from sympy.core.compatibility import reduce, as_int, xrange
from sympy... | shipci/sympy | sympy/functions/combinatorial/factorials.py | Python | bsd-3-clause | 17,896 | [
"VisIt"
] | df820383bf077cd397b119bce197ab2fbbe82c24cad592cade89d91055c28185 |
from __future__ import absolute_import, division, print_function, unicode_literals
from textwrap import dedent
import collections
import hashlib
from functools import wraps
import os
import numpy as np
import netCDF4 as nc4
from gridded.utilities import (get_dataset,
_reorganize_spatia... | NOAA-ORR-ERD/gridded | gridded/variable.py | Python | unlicense | 44,005 | [
"NetCDF"
] | 08f531710d3d6be3db6c7f229ab8f6f118f80185a90b99337d68c0b31d861920 |
# creates: nice.png
import numpy as np
from ase import Atoms
from ase.io import write
atoms = Atoms('Ag', cell=(2.7, 2.7, 2.7), pbc=True) * (18, 8, 8)
# view with ag
#view(atoms)
rotation = '-70x, -20y, -2z' # found using ag menu 'view -> rotate'
#Make colors
from ase.utils import hsv
colors = hsv(atoms.positions... | conwayje/ase-python | doc/tutorials/saving_graphics.py | Python | gpl-2.0 | 1,856 | [
"ASE",
"Jmol",
"VMD"
] | 9e5747cd1943bb0445e8357a28f93e26f204724ab35e1c7a05d69d20b6d2a9d1 |
from datetime import timedelta
import functools
import itertools
import warnings
import numpy as np
import pandas as pd
from . import common
from . import indexing
from . import ops
from . import utils
from .pycompat import basestring, OrderedDict, zip, dask_array_type
from .indexing import (PandasIndexAdapter, ortho... | petercable/xray | xray/core/variable.py | Python | apache-2.0 | 35,035 | [
"NetCDF"
] | fa28af0016bda1b3b4dd29cbd380b9f59e3653292d2e9181e0422fbd0f2c934a |
#!/usr/bin/env python3
"""
refguide_check.py [OPTIONS] [-- ARGS]
- Check for a NumPy submodule whether the objects in its __all__ dict
correspond to the objects included in the reference guide.
- Check docstring examples
- Check example blocks in RST files
Example of usage::
$ python refguide_check.py optimize... | charris/numpy | tools/refguide_check.py | Python | bsd-3-clause | 38,700 | [
"Gaussian"
] | da292c335fe807c55822627cd9d9b3694e1e8fbbbc457139e2587e325adc552e |
# -*- coding: utf-8 -*-
"""
Created on Tue Jul 03 09:25:36 2012
@author: Shreejoy
"""
from neuroelectro.models import Article, MeshTerm, Substance, Journal
from neuroelectro.models import Neuron, NeuronSyn, Unit
from neuroelectro.models import BrainRegion, InSituExpt, Protein, RegionExpr
from neuroelectro.m... | lessc0de/neuroelectro_org | aba_functions/assign_neurons_allen_regions.py | Python | gpl-2.0 | 6,372 | [
"NEURON"
] | 0696ce99f891262dba4378a59f0a6fee662c1799330d1952ca29ece78a68f72f |
from math import sqrt
import numpy as np
__all__ = ['FixCartesian', 'FixBondLength', 'FixedMode', 'FixConstraintSingle',
'FixAtoms', 'UnitCellFilter', 'FixScaled', 'StrainFilter',
'FixedPlane', 'Filter', 'FixConstraint', 'FixedLine',
'FixBondLengths', 'FixInternals']
def slice2enlis... | askhl/ase | ase/constraints.py | Python | gpl-2.0 | 46,818 | [
"ASE"
] | c9f378a07b1e7c30931fa7943dfef2f9e63b6b89233c0d97813ebc093dec4a35 |
__RCSID__ = "$Id$"
from DIRAC import gLogger, S_OK
from DIRAC.Core.Base.AgentModule import AgentModule
#from DIRAC.StorageManagementSystem.Client.StorageManagerClient import StorageManagerClient
from DIRAC.Core.Utilities.List import sortList
from D... | sposs/DIRAC | StorageManagementSystem/Agent/StageRequestAgent.py | Python | gpl-3.0 | 23,332 | [
"DIRAC"
] | 343cebb8b695ea4b27600d9253456727b89ed564dd9f0eae566bbfb4e5e7a57f |
# This Source Code Form is subject to the terms of the Mozilla Public
# License, v. 2.0. If a copy of the MPL was not distributed with this
# file, You can obtain one at https://mozilla.org/MPL/2.0/.
import pytest
import os.path as osp
from sisl.io.vasp.locpot import *
import numpy as np
pytestmark = [pytest.mark.io, ... | zerothi/sisl | sisl/io/vasp/tests/test_locpot.py | Python | mpl-2.0 | 987 | [
"VASP"
] | 52a8d4f35e866ba2f7c36aa34120bfc97e5a0fa6ebeb9c593cec46df83668250 |
import _vlfeat
import numpy
from quickshift import vl_quickseg,vl_quickvis
def vl_sift(data, frames=None,
octaves=-1, levels=-1, first_octave=0,
peak_thresh=-1.0, edge_thresh=-1.0, norm_thresh=-1.0,
magnif=-1.0, window_size=-1.0, orientations=False,
verbose=0):
"""Computes the ... | fish2000/python-vlfeatures | vlfeat/__init__.py | Python | gpl-2.0 | 11,856 | [
"Gaussian"
] | 58dfe97b5c0552bea79b5f8267b3de4965be7b0f56164a2187afed82498dbf68 |
# Lint as: python2, python3
# -*- coding: utf-8 -*-
# Copyright 2018 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org... | mlperf/training_results_v0.7 | Google/benchmarks/transformer/implementations/transformer-research-TF-tpu-v4-16/lingvo/core/py_utils.py | Python | apache-2.0 | 145,392 | [
"Gaussian"
] | f1995767f6ca3ad7725c1398c638ae850496e70b7ea91d503b19deb6641508a9 |
###############################################################################
# Copyright (c) 2007-2018, National Research Foundation (Square Kilometre Array)
#
# Licensed under the BSD 3-Clause License (the "License"); you may not use
# this file except in compliance with the License. You may obtain a copy
# of the ... | ludwigschwardt/scikits.fitting | scikits/fitting/__init__.py | Python | bsd-3-clause | 4,864 | [
"Gaussian"
] | 857b475d34d32ca33dfef68f270465ccd9465bcfd29e7e300c30c87b997f9bb8 |
from __future__ import (absolute_import, division, print_function)
import unittest
from mantid.simpleapi import (DeleteWorkspace, CreateSampleWorkspace,
AddSampleLog, EditInstrumentGeometry,
CloneWorkspace, CompareWorkspaces, FindEPP)
from testhelpers import ... | wdzhou/mantid | Framework/PythonInterface/test/python/plugins/algorithms/ComputeCalibrationCoefVanTest.py | Python | gpl-3.0 | 6,573 | [
"Gaussian"
] | bda4122bf80d3ff88bb4c789d2f5f8630ecd659a897db02700efaac4826019dc |
"""
Convert a miniast to an XML document using ElementTree. This allows us to
write XPath unit tests, or just serialize the AST.
"""
__all__ = ['etree', 'tostring', 'XMLDumper']
import miniutils
try:
from lxml import etree
have_lxml = True
except ImportError:
have_lxml = False
try:
# Python 2... | markflorisson/minivect | minivect/xmldumper.py | Python | bsd-2-clause | 2,599 | [
"VisIt"
] | 471ecc2adcce19deacd1a281d3e3798e4ed574ce4147b4dda04a3449822d213f |
from paraview.simple import *
import sys
from paraview import smtesting
resolution = 15
cone = Cone(Resolution=resolution)
if cone.Resolution != resolution:
raise smtesting.TestError('Test failed: Resolution has not been set properly.')
resolution = 12
cone.Resolution = resolution
if cone.Resolution != resolution... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/ParaViewCore/ServerManager/Default/Testing/Python/PythonPVSimpleCone.py | Python | gpl-3.0 | 1,537 | [
"ParaView"
] | 30fe9c78b0585827eddc2bcfb73bab4f9e747529f2b02b573f3ae6ba197b3174 |
# Copyright 2017 Battelle Energy Alliance, LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed t... | joshua-cogliati-inl/raven | framework/SupervisedLearning/ScikitLearn/DiscriminantAnalysis/LinearDiscriminantAnalysis.py | Python | apache-2.0 | 7,028 | [
"Gaussian"
] | 48651e9764bbd783061f875fb5f51c337b0f51f9c5db44ad64cdc0ed6ea2a040 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
import textwrap
from . import constants, geometry, helper
from .config import Config
class Translator:
def __init__(self, language=Config().default_language):
if language in constants.supported_language_list:
self.language = language
else:
... | scheibler/WalkersGuide-Server | webserver/translator.py | Python | gpl-3.0 | 67,659 | [
"CASINO"
] | 921aea82ed888611843c1dd6b466506acfd113b9367084cc19e63c3139bad6f8 |
# https://leetcode.com/problems/first-missing-positive/
"""
Similar to Bloomberg's question for Brian.
In this quesiton I am using the invariant that A[i] should contain value i+1
Rest is this explanation:
Time: O(N)
Space: O(1)
http://stackoverflow.com/questions/1586858/find-the-smallest-integer-not-in-a-list
"""
... | young-geng/leet_code | problems/41_first-missing-positive/main.py | Python | mit | 943 | [
"Brian"
] | 10770e168882140eae539d133d07c2e9d155690a48aace11b14afc0afb0834e6 |
from datetime import date, time, timedelta
from decimal import Decimal
import random
from django.test import TestCase
from django.utils import timezone
from .models import Person, Role
from .fixtures import create_fixtures
class BulkUpdateTests(TestCase):
def setUp(self):
self.now = timezone.now().repl... | HowGood/django-bulk-update | tests/tests.py | Python | mit | 13,421 | [
"CRYSTAL"
] | 38da9e8a44d94e380667b0414e59310af774021d461be125ffe148b2495ec03f |
../../../../../../../share/pyshared/orca/scripts/apps/gedit/__init__.py | Alberto-Beralix/Beralix | i386-squashfs-root/usr/lib/python2.7/dist-packages/orca/scripts/apps/gedit/__init__.py | Python | gpl-3.0 | 71 | [
"ORCA"
] | bd53e1bccc31d97bf3758ff4092aba71cd0df61eacb727bd5117e4ed68137e05 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
"""
Created on Jul 17, 2012
"""
__author__ = "Shyue Ping Ong"
__copyright__ = "Copyright 2012, The Materials Project"
__version__ = "0.1"
__maintainer__ = "S... | aykol/pymatgen | pymatgen/core/tests/test_sites.py | Python | mit | 10,450 | [
"pymatgen"
] | 524428c7c0bc260a925e3f27d7f7a4ea15dcd2a0b276494405e1fe7b1d07b1c5 |
# $Id$
#
# Copyright (C) 2016 Novartis Institute of BioMedical Research
# All Rights Reserved
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above co... | bp-kelley/rdkit | Code/GraphMol/StructChecker/Wrap/rough_test.py | Python | bsd-3-clause | 7,432 | [
"RDKit"
] | 9c7b98682d9a41f75c60ad97b1eaa3d22a38b9f124d750bb17080668f28c6d95 |
import pandas as pd
from cobra.io.sbml import create_cobra_model_from_sbml_file
from cobra.manipulation.modify import convert_to_irreversible
import numpy as np
from model_addons import add_to_model
from copy import deepcopy
class rates(object):
def __init__(self):
self.model = create_cobra_mo... | dandanvidi/in-vivo-catalytic-rates | scripts/catalytic_rates.py | Python | mit | 14,326 | [
"Avogadro"
] | 70224ee8b07975bcaa4d3c927096581fa360d3bc437d30fb2f04b7340302ce59 |
import casadi as ca
import pylab as pl
import casiopeia as cp
import os
# (Model and data taken from: Diehl, Moritz: Course on System Identification,
# exercise 7, SYSCOP, IMTEK, University of Freiburg, 2014/2015)
# Defining constant problem parameters:
#
# - m: representing the ball of the mass in kg
# - ... | adbuerger/casiopeia | concept_tests/sd_check_pendulum_linear.py | Python | lgpl-3.0 | 4,929 | [
"Gaussian"
] | 20b63eb2ee8038a30b9690d52c13d43018ae24b343253344f45707d33c8fc33e |
# -*- coding: utf-8 -*-
"""
Created on Tue Jan 12 10:34:07 2016
@author: Radu
"""
from cell import Cell
from neuron import h
class ClarkeRelay(Cell): #### Inherits from Cell
"""Two-section cell: A soma with active channels and
a dendrite with passive properties."""
#### __init__ is gone and handled in Ce... | penguinscontrol/Spinal-Cord-Modeling | ClarkesNetwork/clarke.py | Python | gpl-2.0 | 3,835 | [
"NEURON"
] | aacb5dab0a106df6167c0397fb7ff154192767de748a82613c7f31ee51c10986 |
from abc import ABCMeta, abstractmethod
"""Module description: This module contain the abstract base-classes for the
repositories in shyft, defining the contracts that a repository should
implement.
Brief intro to Repository pattern here:
http://martinfowler.com/eaaCatalog/repository.html
http://www.codeproj... | felixmatt/shyft | shyft/repository/interfaces.py | Python | lgpl-3.0 | 15,871 | [
"NetCDF"
] | edc598814ef2e7413d2f701bc1a2043860a64454845a1130a86d60ad530ba260 |
import sys
import tempfile
import shutil
import time
import os
import pandas
sys.path.insert(1, "../../")
import h2o
import h2o.utils.shared_utils as h2o_utils
from tests import pyunit_utils
from h2o.estimators.gbm import H2OGradientBoostingEstimator
genmodel_name = "h2o-genmodel.jar"
def download_mojo(model, moj... | spennihana/h2o-3 | h2o-py/tests/testdir_misc/pyunit_mojo_predict.py | Python | apache-2.0 | 10,966 | [
"Gaussian"
] | 7cfb2c5541ba1fb025821919f447ae540c21c31f924af1f0cd600961765e2c51 |
from __future__ import absolute_import
import numpy as np
import matplotlib.pyplot as plt
from .. import utils
from ..config import DEFAULT_POPULATION_COLORS
class NeuroVis(object):
'''This class is used to visualize firing activity of single neurons.
This class implements several conveniences for visualiz... | codekansas/spykes | spykes/plot/neurovis.py | Python | mit | 14,947 | [
"NEURON"
] | 3a879f5c2e0285639585bd54b0c36b4c3ee49a94ddcfaad32930202b8925848f |
# This file is part of PyEMMA.
#
# Copyright (c) 2015, 2014 Computational Molecular Biology Group, Freie Universitaet Berlin (GER)
#
# PyEMMA is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either vers... | markovmodel/PyEMMA | pyemma/coordinates/tests/test_save_traj.py | Python | lgpl-3.0 | 9,821 | [
"MDTraj"
] | 66c823ea5e23bf7f9b2303b59c8c21245b5ab7fd0b5f53742a7104f4513649f8 |
#
# Copyright (c) 2016 nexB Inc. and others. All rights reserved.
# http://nexb.com and https://github.com/nexB/scancode-toolkit/
# The ScanCode software is licensed under the Apache License version 2.0.
# Data generated with ScanCode require an acknowledgment.
# ScanCode is a trademark of nexB Inc.
#
# You may not use... | yasharmaster/scancode-toolkit | src/licensedcode/match_seq.py | Python | apache-2.0 | 4,556 | [
"VisIt"
] | 4edac3589510be7ca1d16ac5a5b7067a07abf847f7d4b1e232c3b0e53b298b90 |
#!/usr/bin/env python
import logging
from argparse import ArgumentParser
import theano
from theano import tensor
import theano.tensor as T
import blocks
from blocks.algorithms import GradientDescent, Adam
from blocks.bricks import MLP, Tanh, WEIGHT, Rectifier
from blocks.initialization import Constant, NdarrayInitial... | codeaudit/VAE | VAE.py | Python | mit | 15,189 | [
"Gaussian"
] | 4ae8b6004149d6d4c9ce97ea32c71364d7d6e6e8b64ac19d83daf88916a9b959 |
from coalib.bearlib.abstractions.Linter import linter
from dependency_management.requirements.GoRequirement import GoRequirement
@linter(executable='gofmt',
use_stdin=True,
output_format='corrected',
result_message='Formatting can be improved.')
class GofmtBear:
"""
Suggest better form... | coala-analyzer/coala-bears | bears/go/GofmtBear.py | Python | agpl-3.0 | 1,184 | [
"VisIt"
] | fd92fb709cb53da5b75ea3423fbb1b6fc9b168b07ff436c2004861f131c3fad3 |
# Author: Samuel Genheden samuel.genheden@gmail.com
"""
Program to analyze the extent of alcohols
"""
import numpy as np
import MDAnalysis.core.distances as mddist
from sgenlib import moldyn
from sgenlib import mdactions
from sgenlib import pbc
class AlcoholLenAnalysis(mdactions.TrajectoryAction) :
def add_arg... | SGenheden/Scripts | Projects/Yeast/md_alcohol_len.py | Python | mit | 1,477 | [
"MDAnalysis"
] | 072a061d7939dbbc93078def0800b522bda6cee294a9a53ff3495be5ce98a862 |
"""
This module deals with the wannier functions.
utils for the wannier90.x input and outputs.
"""
#from .wannier_utils import *
from .wannier import *
from .wann_ham import *
| mailhexu/pyDFTutils | pyDFTutils/wannier90/__init__.py | Python | lgpl-3.0 | 176 | [
"Wannier90"
] | 3c83348fcf2bd2e6234990ea4d6bac7fe70cd470d739c42dd5563ae4bafd9fe1 |
from __future__ import print_function
import moose
import pylab
import numpy as np
import sys
import os
import matplotlib.pyplot as plt
import rdesigneur as rd
from scipy import stats
import time
baseFname = 'Fig6_data'
displayMoogli = False
displayScatter = False
displayRuns = False
dumpSpatialPlotsFla... | BhallaLab/moose-examples | tutorials/Rdesigneur/ex12.0_multiscale_seq_selectivity.py | Python | gpl-2.0 | 10,548 | [
"MOOSE",
"NEURON"
] | 0c229555f89a2fe49f6e1a8424e6ec6b72e58e457ed1bf991f7c65626db763d0 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2005-2007 Donald N. Allingham
# Copyright (C) 2008 Brian G. Matherly
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; ... | pmghalvorsen/gramps_branch | gramps/gui/dbloader.py | Python | gpl-2.0 | 19,621 | [
"Brian"
] | af551a7e1ca20449ebac96e35be58b79d902e3e6cfbc209ae36582620d46ca67 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Created on Mon Mar 21 19:26:59 2016
@author: GDM
"""
import HaSAPPy.INFOloads as INFOloads
import argparse
parser = argparse.ArgumentParser(description='Launching command of HaSAPPy program')
print
print "***********************************************************"
pr... | gdiminin/HaSAPPy | HaSAPPy/HaSAPPY.py | Python | mit | 1,938 | [
"VisIt"
] | 6c3d816b64b648e08453c595f8fadce266d53fbc5c81b6c630750986d19ad7de |
from distutils.core import setup
setup(name = 'tovtk',
version = '1.4.2',
description = 'Python meshtal to vtk converter',
author = 'A. Travleev, INR-KIT',
author_email = 'anton.travleev@kit.edu',
packages = ['tovtk', ],
entry_points = {'console_scripts': ['tovtk = tovtk.main:main']... | inr-kit/tovtk | setup.py | Python | gpl-3.0 | 333 | [
"VTK"
] | d1f7f58f84e38f540c993cb99f875708f0dad326889ea03d558f04ee146e6653 |
# -*- coding: utf-8 -*-
try:
import numpy as np
except ImportError:
# required due to ase/test/eoswoase.py
pass
class EquationOfStateSJEOS:
"""Fit equation of state for bulk systems.
10.1103/PhysRevB.67.026103
The following equation is used::
A third order inverse polynomial fit
... | alexei-matveev/ase-local | ase/utils/sjeos.py | Python | gpl-2.0 | 3,676 | [
"ASE"
] | af4eb41e3e01c8188a2255f1550ab017425462c4a9edd261a52abebf39a20bb2 |
#
# Copyright 2001 - 2011 Ludek Smid [http://www.ospace.net/]
#
# This file is part of IGE - Outer Space.
#
# IGE - Outer Space is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the Lice... | Lukc/ospace-lukc | server/lib/ige/ospace/IPlanet.py | Python | gpl-2.0 | 47,036 | [
"Galaxy"
] | 1f82f519c2e464ed60585151e7b5c5366dba2b8c43e0667dda452b4fd248269e |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# PCR-GLOBWB (PCRaster Global Water Balance) Global Hydrological Model
#
# Copyright (C) 2016, Ludovicus P. H. (Rens) van Beek, Edwin H. Sutanudjaja, Yoshihide Wada,
# Joyce H. C. Bosmans, Niels Drost, Inge E. M. de Graaf, Kor de Jong, Patricia Lopez Lopez,
# Stefanie Pes... | UU-Hydro/PCR-GLOBWB_model | modflow/scripts/routing.py | Python | gpl-3.0 | 107,603 | [
"NetCDF"
] | c64413b678551cc73fe5c7d86bdf638ace4fe62cf80609cc084c46c3f102ce97 |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/mcscf/newton_casscf_symm.py | Python | apache-2.0 | 5,008 | [
"PySCF"
] | 2cb2f2758bb18238ead8c52aa1e501510dd299a61a14a21fa2e0786828f6e052 |
#!/usr/bin/python3
# -*- coding: utf-8 -*-
##===-----------------------------------------------------------------------------*- Python -*-===##
##
## S E R I A L B O X
##
## This file is distributed under terms of BSD license.
## See LICENSE.txt for more information.
##
##===----------... | thfabian/serialbox2 | src/serialbox-python/serialbox/archive.py | Python | bsd-2-clause | 2,526 | [
"NetCDF"
] | 89af5db04ac6611985be0d0e3473b0a0380d6a82a79f3be7a00d95dc91db7bfd |
import Tools.HTML
if __name__ == "__main__":
import sys,os
selfname = sys.argv[0]
full_path = os.path.abspath(selfname)[:]
last_slash = full_path.rfind('/')
dirpath = full_path[:last_slash] + '/..'
print("Append to PYTHONPATH: %s" % (dirpath))
sys.path.append(dirpath)
import logging
from T... | talipovm/terse | terse/Interface/NBOinteractions.py | Python | mit | 5,715 | [
"Gaussian"
] | 04bd62685fd10965063c4ca9794b3c0515ccd93cd77c73369a6c4b33e0c727dc |
from __future__ import division
import numpy as np
from functools import partial
from builtins import zip
from pybasicbayes.distributions import DiagonalRegression, Gaussian, Regression
import pyhsmm
from pyhsmm.util.general import list_split
from pyslds.states import HMMSLDSStatesPython, HMMSLDSStatesEigen, HSMMSLD... | mattjj/pyhsmm-slds | pyslds/models.py | Python | mit | 20,741 | [
"Gaussian"
] | 1b8bca3aef19960c61ac5989bba2d08a0b154470ca7ee2886daae277df1d7179 |
#!/usr/bin/env python
from numpy import random,array,sin,round#,sqrt
#from pylab import plot, show, legend, fill_between
parameter_list=[[20,100,6,10,0.05,1, 1], [10,30,7,9,0.5,0.5, 2]]
def regression_gaussian_process_modular (n=100,n_test=100, \
x_range=6,x_range_test=10,noise_var=0.5,width=1, seed=1):
from mods... | elkingtonmcb/shogun | examples/undocumented/python_modular/regression_gaussian_process_modular.py | Python | gpl-3.0 | 2,062 | [
"Gaussian"
] | 2cad315605b6e4709615d5fd79b2032bf5e629120141154728c7ea85893a8ac0 |
# encoding: utf-8
"""
Enable pygtk to be used interacive by setting PyOS_InputHook.
Authors: Brian Granger
"""
#-----------------------------------------------------------------------------
# Copyright (C) 2008-2011 The IPython Development Team
#
# Distributed under the terms of the BSD License. The full license ... | dannyperry571/theapprentice | script.module.pydevd/lib/pydev_ipython/inputhookgtk.py | Python | gpl-2.0 | 1,086 | [
"Brian"
] | 8956f645d6819f3d8da4528a2664e160b6015caa57aeb2e44c577a20814f5bc3 |
PRODUCTS = {
'iphone': {
'name': 'iPhone 5S',
'category': 'Phones',
'price': 699,
},
'galaxy': {
'name': 'Samsung Galaxy 5',
'category': 'Phones',
'price': 649,
},
'ipad-air': {
'name': 'iPad Air',
'category': 'Tablets',
'price': 649,
},
'ipad-mini': {
'name': 'iPad Mini',
'category': '... | enixdark/im-r-e-d-i-s | flask-cook/my_app/product/models.py | Python | mit | 350 | [
"Galaxy"
] | 528f5cf2665aea1c9112fca992fa48d18416fd733dd5d59b9d7ae336f3064071 |
# Copyright (C) 2010-2018 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later v... | hmenke/espresso | samples/billard.py | Python | gpl-3.0 | 11,587 | [
"ESPResSo"
] | 879db182472420f8778550ffdddd0067dc5d60f67b6ac044520137902e929ba3 |
import numpy, scipy, math, sys
import keparray
from math import modf, cos, sin, radians, exp
from scipy import ndimage, interpolate
from scipy.ndimage import interpolation
from scipy.ndimage.interpolation import shift, rotate
from scipy.interpolate import RectBivariateSpline, interp2d
from keparray import rebin2D
from ... | barentsen/dave | extractDetrend/K2photo/kepfunc.py | Python | mit | 25,086 | [
"Gaussian"
] | a25ddd303332e4fa8d681a432f16ecab3c904b13c0fe5cf7ba38dac8d3bd6e34 |
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Matti Hamalainen <msh@nmr.mgh.harvard.edu>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Mads Jensen <mje.mads@gmail.com>
#
# License: BSD (3-clause)
import copy
import os.path as op
from math import ceil
import warn... | alexandrebarachant/mne-python | mne/source_estimate.py | Python | bsd-3-clause | 114,461 | [
"Mayavi"
] | 0fe0a612ee2bd88bea880caecd107f5377e4a645956ce008bf44312a75821c05 |
from .layer import Layer
from ..activation import Activation
from ..potential import Potential
import numpy as np
class Particle3(object):
"""
2D monopole input, dipole output
"""
def __init__(self, input_size=0, output_size=0, activation="sigmoid", potential="gaussian", s=1.0, q=None, b=None,
... | awlange/brainsparks | src/calrissian/layers/particle3.py | Python | mit | 3,421 | [
"Gaussian"
] | f80fdfa998fba9ae7ec5b360efc4aabd7d735a1840cee6ea7919f3e598d86cb8 |
from octopus.server.DBInterface import DBInterface
import os
from octopus.mlutils.pythonEmbedder.PythonEmbedder import Embedder
class APIEmbedder(object):
def __init__(self):
self._initializeDBConnection()
def _initializeDBConnection(self):
self.dbInterface = DBInterface()
d... | octopus-platform/joern | python/joern-tools/joern/APIEmbedder.py | Python | lgpl-3.0 | 2,776 | [
"Octopus"
] | 0c597fde7e038cb89ddeea52b263fc4cb748a69055964f0513fabf2545701adc |
# !usr/bin/env python2
# -*- coding: utf-8 -*-
#
# Licensed under a 3-clause BSD license.
#
# @Author: Brian Cherinka
# @Date: 2017-06-12 18:41:25
# @Last modified by: andrews
# @Last modified time: 2018-03-02 17:03:81
from __future__ import print_function, division, absolute_import
import pytest
@pytest.fixture... | sdss/marvin | tests/misc/test_sampledb.py | Python | bsd-3-clause | 4,148 | [
"Brian",
"Galaxy"
] | 0370adf98b1d3c96f6c2093bd57630b3f4c49da305d272207f61567c596e76ac |
# -*- coding: utf-8 -*-
# vim: tabstop=4 shiftwidth=4 softtabstop=4
#
# Copyright (c) 2016-2022 GEM Foundation
#
# OpenQuake is free software: you can redistribute it and/or modify it
# under the terms of the GNU Affero General Public License as published
# by the Free Software Foundation, either version 3 of the Licen... | gem/oq-engine | openquake/hazardlib/stats.py | Python | agpl-3.0 | 14,555 | [
"Gaussian"
] | f523483e6069ba2956471c06947f24f279e9e0c76e4814ff9f61a4851bdb2c25 |
#!/usr/bin/env python
__author__ = "waroquiers"
import os
import shutil
import unittest
from monty.tempfile import ScratchDir
from pymatgen.core import SETTINGS
from pymatgen.analysis.chemenv.utils.chemenv_config import ChemEnvConfig
from pymatgen.util.testing import PymatgenTest
config_file_dir = os.path.join(
... | vorwerkc/pymatgen | pymatgen/analysis/chemenv/utils/tests/test_chemenv_config.py | Python | mit | 2,012 | [
"pymatgen"
] | 2ef648fd2ed20a978aa737a0e4acb0b993029df85646b43e84ba3a4b9f7ef1be |
import requests
import os
from bs4 import BeautifulSoup
from beatmap import *
class OsuWebConnection:
# new site
home_url = "https://osu.ppy.sh/home"
login_url = "https://osu.ppy.sh/session"
def __init__(self):
self.session = requests.Session()
print("Login:")
self.login = inp... | altur13/osu-Downloader | osu_web_connection.py | Python | gpl-3.0 | 3,627 | [
"VisIt"
] | 8c81e5d7d059a8217249445b15fdd2527ac7d57313b446b3eddac7358a3b82ed |
""" The CountryMapping module performs the necessary CS gymnastics to resolve country codes """
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
__RCSID__ = "$Id$"
from DIRAC import gConfig, S_OK, S_ERROR
def getCountryMapping(country):
"""Determines... | ic-hep/DIRAC | src/DIRAC/Core/Utilities/CountryMapping.py | Python | gpl-3.0 | 1,218 | [
"DIRAC"
] | 5bce85871d925225eb160c70405a3e946a4b3aa6f49ea5c6e690a13a7aec3bfe |
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