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###########################################################################
#
# Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/l... | google/starthinker | dags/sa360_web_query_dag.py | Python | apache-2.0 | 4,184 | [
"VisIt"
] | cc8ef572d41cf6fb7573707eb4402373ca6ea7ff670b6f3d4efd1f125fbe44d3 |
#!/usr/bin/env python
# coding: utf-8
# # Advanced: Convert Posterior Distributions from EMCEE
#
# **IMPORTANT**: this tutorial assumes basic knowledge (and uses a file resulting from) the [emcee tutorial](./emcee.ipynb).
#
# **NOTE**: a bug in the latex labels when *converting to univariate distributions* was fixed... | phoebe-project/phoebe2-docs | 2.3/tutorials/emcee_distributions_convert.py | Python | gpl-3.0 | 6,472 | [
"Gaussian"
] | f356966ed3d900aef401960658088915657e8a6e5add4ffbf762533e657045aa |
#!/usr/bin/env python
# -*- coding:utf-8 mode:python; tab-width:4; indent-tabs-mode:nil; py-indent-offset:4 -*-
##
"""
test_energy_semiempirical_mopac7
~~~~~~~~~~~~~~
Test MOPAC 7 semiempirical implementation for energy.
"""
import sys
import geoprep
from adapters import mopac7
from tests.common_testcode... | mattbernst/polyhartree | tests/test_energy_semiempirical_mopac7.py | Python | gpl-3.0 | 1,188 | [
"MOPAC"
] | 340c67ea456c1d8fe308e66a8cef480b662bd68f21914e25e1202c935720b028 |
"""
ASE interface to pmd.
"""
from __future__ import print_function
import os
import subprocess
import numpy as np
from ase.calculators.calculator import FileIOCalculator,Calculator
import nappy
from nappy.interface.ase.pmdio import get_fmvs
from nappy.napsys import NAPSystem
__author__ = "Ryo KOBAYASHI"
__version_... | ryokbys/nap | nappy/interface/ase/pmdrun.py | Python | mit | 13,768 | [
"ASE"
] | 6bc62bada7ebc8fa38247039a22cd67c435ca81a1c0f0eb152ccb8b090ddc286 |
# gridDataFormats --- python modules to read and write gridded data
# Copyright (c) 2009-2014 Oliver Beckstein <orbeckst@gmail.com>
# Released under the GNU Lesser General Public License, version 3 or later.
#
# Part of the documentation and format specification: Copyright CSC, 2005
"""
:mod:`gOpenMol` --- the gOpenMo... | holocronweaver/GridDataFormats | gridData/gOpenMol.py | Python | gpl-3.0 | 10,392 | [
"GAMESS",
"Gaussian",
"Jaguar"
] | 5c91ea7da5fd137222fa5067126d1145cc889efe60c664796f59c5e4a7f6287d |
#!/usr/bin/env python
# extract HOT-region analysis from R script outputs!
import sys
import time
import optparse
import general
import numpy
import scipy
import pickle
import pdb
import metrn
import modencode
import fasta
import random
import shutil
import os
from runner import *
print "Command:", " ".join(sys.argv)... | claraya/meTRN | python/mapHOT.py | Python | mit | 77,503 | [
"BWA",
"Bowtie"
] | 16ab70fea5f6610f3bb7822891ec7c933a9e53815c751df75caa05968b2073e0 |
# -*- coding: utf-8 -*-
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation; either version 2
# of the License, or (at your option) any later version.
#
# This program is distributed in the hope tha... | Akasurde/bodhi | bodhi/tests/functional/test_updates.py | Python | gpl-2.0 | 86,419 | [
"VisIt"
] | 1f36b085e378822f14157171ba17a3d0860da02008a13803cd86e06f3c2d85a0 |
"""
BIANA: Biologic Interactions and Network Analysis
Copyright (C) 2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either vers... | emreg00/biana | biana/BianaParser/nrParser.py | Python | gpl-3.0 | 17,733 | [
"BLAST"
] | a97356a0d2d462741be4e7528851b0ef69d88618c31f5f0f76418cd402607045 |
from .core import UnitedStates
from ..registry_tools import iso_register
# FIXME: According to wikipedia, Kansas only has all federal holidays, except
# the Columbus Day and Washington's Birthday.
# Unfortunately, other sources mention XMas Eve for 2018, but not for other
# years.
# I'm a bit sad here...
#
# Sources t... | novafloss/workalendar | workalendar/usa/kansas.py | Python | mit | 813 | [
"COLUMBUS"
] | 5800194f7e78f62df7615e137352b69d0d1b4fae374569a47c128ec5fa539fb7 |
# Copyright 2019 The TensorFlow Probability Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... | tensorflow/probability | tensorflow_probability/python/distributions/doublesided_maxwell.py | Python | apache-2.0 | 9,164 | [
"Gaussian"
] | f57661b7fc00a79f0605e5367f7cb90843f06614813c1d0a4a308c220ab5466b |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4 fileencoding=utf-8
#
# MDAnalysis --- http://www.mdanalysis.org
# Copyright (c) 2006-2016 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#
... | alejob/mdanalysis | testsuite/MDAnalysisTests/analysis/test_pca.py | Python | gpl-2.0 | 3,905 | [
"MDAnalysis"
] | 5057c5fe93e4f2d460bf68196cb7eb1a1f3f43970534f7c41e162e6b92b10045 |
# (c) 2012-2018, Ansible by Red Hat
#
# This file is part of Ansible Galaxy
#
# Ansible Galaxy is free software: you can redistribute it and/or modify
# it under the terms of the Apache License as published by
# the Apache Software Foundation, either version 2 of the License, or
# (at your option) any later version.
#
... | chouseknecht/galaxy | galaxy/main/auth/__init__.py | Python | apache-2.0 | 1,864 | [
"Galaxy"
] | 02c38fbce26836951b807425d93ea3778a0b746194fb1804a737ed77f71271bc |
from tigershark.facade import CompositeAccess
from tigershark.facade import ElementAccess
from tigershark.facade import ElementSequenceAccess
from tigershark.facade import Facade
from tigershark.facade import Money
from tigershark.facade import SegmentAccess
from tigershark.facade import SegmentConversion
from tigersha... | sbuss/TigerShark | tigershark/facade/f271.py | Python | bsd-3-clause | 15,668 | [
"VisIt"
] | c8f7bf1c2a2fee28d216a5d2ef72d702fa14d6e02cfec89305cc28f212da8670 |
"""
Tests for discussion pages
"""
import datetime
from pytz import UTC
from uuid import uuid4
from nose.plugins.attrib import attr
from .helpers import BaseDiscussionTestCase
from ..helpers import UniqueCourseTest
from ...pages.lms.auto_auth import AutoAuthPage
from ...pages.lms.courseware import CoursewarePage
from... | DefyVentures/edx-platform | common/test/acceptance/tests/discussion/test_discussion.py | Python | agpl-3.0 | 42,568 | [
"VisIt"
] | 1208246d8dc7bbd6358876615e3266c0a0e0a0fdc8d5a3f29f2d5b46831d865c |
# -*- coding: utf-8 -*-
#
# This file is part of cclib (http://cclib.github.io), a library for parsing
# and interpreting the results of computational chemistry packages.
#
# Copyright (C) 2007-2014, the cclib development team
#
# The library is free software, distributed under the terms of
# the GNU Lesser General Pub... | jchodera/cclib | src/cclib/parser/molproparser.py | Python | lgpl-2.1 | 38,027 | [
"GAMESS",
"Gaussian",
"Molpro",
"cclib"
] | 6c7a47fcb33e5a514d10586160b95bfb6a87b92cb9a445a7f8c78fd2d5316dac |
# Copyright (C) 2018, 2017
# Max Planck Institute for Polymer Research
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the Lice... | espressopp/espressopp | src/integrator/LangevinThermostatOnRadius.py | Python | gpl-3.0 | 2,876 | [
"ESPResSo"
] | 221661def68c669a848f4de2e74d5af3b1d0354b0c50e586d10f6534bf73e4c5 |
'''
More information at: http://www.pymolwiki.org/index.php/elbow_angle
Calculate the elbow angle of an antibody Fab complex and optionally draw a
graphical representation of the vectors used to determine the angle.
NOTE: There is no automatic checking of the validity of limit_l and limit_h
values or of the assignm... | demharters/git_scripts | my_elbow_angle_ab.py | Python | apache-2.0 | 7,399 | [
"PyMOL"
] | 29d448ac87a1f2092ff257b463aee2ae0c96c225cb4db5a8ab2ee84655c43eaf |
"""
Actions manager for transcripts ajax calls.
+++++++++++++++++++++++++++++++++++++++++++
Module do not support rollback (pressing "Cancel" button in Studio)
All user changes are saved immediately.
"""
import copy
import json
import logging
import os
import requests
from django.conf import settings
from django.cont... | lduarte1991/edx-platform | cms/djangoapps/contentstore/views/transcripts_ajax.py | Python | agpl-3.0 | 21,535 | [
"FEFF"
] | 18d507601802577694bb09aacd973541a28af0edddbcc3194d3927b9e57da746 |
# -*- coding: utf-8 -*-
#
# test_connect_array_fixed_indegree.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either versio... | hakonsbm/nest-simulator | pynest/nest/tests/test_connect_array_fixed_indegree.py | Python | gpl-2.0 | 3,322 | [
"NEURON"
] | df738b1aecbafcd8734aeb97e2771b83ba149ac787a005966bdf552020a457b7 |
#!/usr/bin/env python
# ----------------------------------------------------------------------------
# Copyright (c) 2014--, tax-credit development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# ---------------------... | nbokulich/short-read-tax-assignment | setup.py | Python | bsd-3-clause | 895 | [
"scikit-bio"
] | d69bbf5e2bd0efec705abfde7c06dff74c4b6890f5a7914e15a9d88991139ecc |
"""
Tests for the antisite renderer
"""
from __future__ import absolute_import
from __future__ import unicode_literals
import unittest
import numpy as np
import vtk
from vtk.util import numpy_support
from .. import antisiteRenderer
from ... import utils
from six.moves import range
################################... | chrisdjscott/Atoman | atoman/rendering/renderers/tests/test_antisiteRenderer.py | Python | mit | 2,673 | [
"VTK"
] | 1e2920f59e8d6430bf24817c78b445d0a675b4f3c3fe19dbfcb44c8f67226aec |
# Licensed to Tomaz Muraus under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# Tomaz muraus licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not use this file except in... | ogrisel/python-file-syncer | file_syncer/run.py | Python | apache-2.0 | 5,893 | [
"VisIt"
] | 22d2a293d64b7fc9c9bf3f402765033c18f7c7f4b391a580f50f466989e70f4d |
# pylint: disable=missing-docstring
# pylint: disable=redefined-outer-name
# pylint: disable=unused-argument
from lettuce import step, world
@step('I click on View Courseware')
def i_click_on_view_courseware(step):
world.css_click('a.enter-course')
@step('I click on the "([^"]*)" tab$')
def i_click_on_the_tab(... | ahmedaljazzar/edx-platform | lms/djangoapps/courseware/features/courseware_common.py | Python | agpl-3.0 | 1,186 | [
"VisIt"
] | fa22309df3dec9b4e7972f123b5c92982a136006c5651844903ba66cd58fe79a |
##
# Copyright 2009-2013 Ghent University
#
# This file is part of EasyBuild,
# originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),
# with support of Ghent University (http://ugent.be/hpc),
# the Flemish Supercomputer Centre (VSC) (https://vscentrum.be/nl/en),
# the Hercules foundation (htt... | geimer/easybuild-easyblocks | easybuild/easyblocks/f/ferret.py | Python | gpl-2.0 | 4,526 | [
"NetCDF"
] | 2994996810edb343a00c361ebc3451de59ab67e41636c7dea2582e4e6439a065 |
# -*- coding: utf-8 -*-
from os.path import dirname, join
import unilangs.bcp47.parser as parser
from unittest import TestCase
from unilangs.bcp47.parser import (
parse_code, InvalidLanguageCodeException, MalformedLanguageCodeException
)
class BCP47ParserTest(TestCase):
def assertMalformed(self, code):
... | pculture/unilangs | unilangs/tests/test_bcp47_parsing.py | Python | mit | 17,603 | [
"ASE"
] | 5bf1785f99f2f28d6c02f4e70ab5d8cfc00492b8307661707b80066a6d074104 |
import os
import tempfile
import numpy as np
from noseperf.testcases import PerformanceTest
#from mdtraj import dcd, binpos, trr, netcdf, hdf5
from mdtraj import (XTCTrajectoryFile, TRRTrajectoryFile, DCDTrajectoryFile,
BINPOSTrajectoryFile, NetCDFTrajectoryFile, HDF5TrajectoryFile)
#############... | marscher/mdtraj | MDTraj/tests/performance/test_readwrite.py | Python | lgpl-2.1 | 4,297 | [
"MDTraj",
"NetCDF"
] | 6194538ca8c931744d9ef21fed17dd779cd372808aa1841c21070a4b6a00f8b1 |
########################################################################
# $Id$
########################################################################
__RCSID__ = "$Id$"
from DIRAC import S_OK, S_ERROR, gLogger
from DIRAC.DataManagementSystem.DB.FileCat... | coberger/DIRAC | DataManagementSystem/DB/FileCatalogComponents/WithFkAndPs/FileManagerPs.py | Python | gpl-3.0 | 30,500 | [
"DIRAC"
] | c54f9ce19c9840f5f11e49fda2f5ca3ad6e87ce18f5051c68286118bef51a7a8 |
# -*- coding: utf-8 -*-
#!/usr/bin/env python
import os
import sys
try:
from setuptools import setup
except ImportError:
from distutils.core import setup
import test-for-brian-criswell
version = test-for-brian-criswell.__version__
setup(
name='test-for-brian-criswell',
version=version,
author='... | mikemitr/test-for-brian-criswell | setup.py | Python | bsd-3-clause | 569 | [
"Brian"
] | a8ff2cd042fbf265792c0b149d94c8a0a2627cf1c65b9554ac11db0445af7d79 |
#! /usr/bin/env python
#David Shean
#dshean@gmail.com
#This utility will interpolate to fill gaps in both spatial and temporal dimension
import os
import sys
import multiprocessing as mp
from datetime import datetime, timedelta
import pickle
from copy import deepcopy
import matplotlib.pyplot as plt
from mpl_tool... | dshean/iceflow | iceflow/ndinterp.py | Python | mit | 12,920 | [
"Gaussian"
] | c992df346ba988b665c955234b80aa7258d1364c8db50684146d25aee766ff08 |
import unittest as ut
from .. import tabular as ta
from ....common import RTOL, ATOL, pandas, requires as _requires
from ....examples import get_path
from ...shapes import Polygon
from ....io import geotable as pdio
from ... import ops as GIS
import numpy as np
try:
import shapely as shp
except ImportError:
sh... | lixun910/pysal | pysal/lib/cg/ops/tests/test_tabular.py | Python | bsd-3-clause | 2,367 | [
"COLUMBUS"
] | 920338e0144287afff38d9aa3bfdc924fd315768eedbd3ccff4e644afed5f218 |
# Copyright 2000-2003 Jeff Chang.
# Copyright 2001-2008 Brad Chapman.
# Copyright 2005-2011 by Peter Cock.
# Copyright 2006-2009 Michiel de Hoon.
# All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part ... | bryback/quickseq | genescript/Bio/SeqFeature.py | Python | mit | 47,556 | [
"Biopython"
] | 95c930e76ace245eacf4bc1a1eaa6473aeadd2f9e013bdc2867e717cb0e729f5 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""Wrapper for netCDF readers."""
from __future__ import unicode_literals, division, print_function
import os.path
from monty.dev import requires, deprecated
from monty.collections import AttrDict
from monty.f... | migueldiascosta/pymatgen | pymatgen/io/abinit/netcdf.py | Python | mit | 9,868 | [
"NetCDF",
"pymatgen"
] | 0a1423f6c757519c65c8e56f8876f0afcfbdd70b1102f4ef849c90fd1ad53dd4 |
"""Generates galaxy labels for individual annotators.
Matthew Alger
The Australian National University
2016
"""
import argparse
import h5py
import numpy
import sklearn.neighbors
from .config import config
ARCMIN = 1 / 60 # deg
ATLAS_IMAGE_SIZE = (config['surveys']['atlas']['fits_width'] *
con... | chengsoonong/crowdastro | crowdastro/generate_annotator_labels.py | Python | mit | 3,441 | [
"Galaxy"
] | 2ea385c0b0013817dc9d18b45beb42657db0ef70fa3a38b3f49c97c519126a0f |
# -~- coding: utf-8 -*-
from datetime import datetime
from django.db import models
from django.core.cache import cache
from django.contrib.sites.models import Site
from django.conf import settings
from nongratae.constants import BLOCKED_IPS_CACHE_KEY
BLOCKED_IPS_CACHE_KEY = BLOCKED_IPS_CACHE_KEY % settings.SITE_ID
... | jjdelc/django-ip-nongratae | nongratae/models.py | Python | bsd-3-clause | 1,838 | [
"VisIt"
] | 8e47c03ac056a697933fe330af15a49a98fa5f0e42bf0f4e97cdf77aee9fa307 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals, absolute_import
"""
This module provides conversion between the Atomic Simulation Environment
Atoms object and pymatgen Structure objects.
"""
__author__ = ... | gpetretto/pymatgen | pymatgen/io/ase.py | Python | mit | 2,106 | [
"ASE",
"pymatgen"
] | a848e2a54a68def633edf59a70a8d997d8100e36e4c8a6a3b6e844107fd4e60f |
import numpy as np
from scipy.spatial.distance import cdist
class Segreg(object):
def __init__(self):
self.attributeMatrix = np.matrix([]) # attributes matrix full size - all columns
self.location = [] # x and y coordinates from tract centroid (2D lists)
self.pop = ... | sandrofsousa/Resolution | Pysegreg/segregationMetrics.py | Python | mit | 11,432 | [
"Gaussian"
] | 4308de787ea4028f75e72b355fd63989d51d397711a77a164dca88083787641d |
"""
This module contains code to actually perform searches in Goat. Idea is to take a
search object, and pointers to the query, record, and results databases. Using the
information in the search object, each query/database search is ran and used to
generate a new results object in the results db. Each result object is ... | chris-klinger/Goat | searches/search_runner.py | Python | gpl-3.0 | 7,582 | [
"BLAST"
] | a53924938f8d49c0259e0dc6e59977358340d6d628a6ae17619d1a04974f5005 |
import random
from genesys.generator import NameGenerator, GENDER_MALE, GENDER_FEMALE
class AnimatronicNameGenerator(NameGenerator):
glue = " "
data = {
GENDER_MALE: [
[
["Abalone", "Ace the", "Achilles", "Acro the", "Acrobat", "Admiral", "Ajax the", "Alfie",
... | d2emon/generator-pack | src/genesys/generator/fng/name/fantasy/animatronic.py | Python | gpl-3.0 | 25,393 | [
"Amber",
"CRYSTAL",
"Jaguar",
"MOE",
"MOOSE",
"Octopus"
] | b6f53cb8c4251fdd26b361edccaab7f3603454fe986cb339593ec1e24c261b39 |
#!/usr/bin/env python
from __future__ import absolute_import
import re
from markdown import Markdown
from markdown.util import AMP_SUBSTITUTE, HTML_PLACEHOLDER_RE
from markdown.odict import OrderedDict
from docutils import nodes
from docutils import parsers
try:
from html import entities
except ImportError:
... | pashango2/sphinx-explorer | sphinx_explorer/settings/extensions/github_markdown.py | Python | mit | 9,563 | [
"VisIt"
] | 7497ab776c5a783410ea96a8df5e3e88ebc812a016211476ec3db5f9f10ec9f6 |
import numpy
from scipy import integrate
_ERASESTR= " "
def localfehdist(feh):
#From 2 Gaussian XD fit to Casagrande et al. (2011)
fehdist= 0.8/0.15*numpy.exp(-0.5*(feh-0.016)**2./0.15**2.)\
+0.2/0.22*numpy.exp(-0.5*(feh+0.15... | jobovy/apogee | apogee/util/__init__.py | Python | bsd-3-clause | 856 | [
"Gaussian"
] | 9ec9b01b4680cc18761b5b25d8092acbb77380b0db403ce4aab3d37b2e322014 |
"""
SIMD vector nodes supported by ctree.
"""
from ctree.nodes import CtreeNode
class SimdNode(CtreeNode):
"""Base class for all SIMD nodes supported by ctree."""
def codegen(self, indent=0):
from ctree.sse.codegen import SimdCodeGen
return SimdCodeGen(indent).visit(self)
def label(sel... | ucb-sejits/ctree | ctree/simd/nodes.py | Python | bsd-2-clause | 423 | [
"VisIt"
] | d228999dfb9a3cc7db7523da09a128cf7c245e603771b8ef3c2d1abf67361c47 |
""" This module attempts to make it easy to create VTK-Python
unittests. The module uses unittest for the test interface. For more
documentation on what unittests are and how to use them, please read
these:
http://www.python.org/doc/current/lib/module-unittest.html
http://www.diveintopython.org/roman_divein.h... | msmolens/VTK | Wrapping/Python/vtk/test/Testing.py | Python | bsd-3-clause | 17,878 | [
"VTK"
] | a36abf9efeadcf79e3b3f0c48d502df3e33de9908f084be631d543f6f101e3f4 |
# -*- coding: utf-8 -*-
# Copyright: (c) 2017, Cisco and/or its affiliates.
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
from ansible.module_utils.basic import env_fallback
from ansible.module_utils.urls import open_url
from ansible.module_utils._text import to_text
im... | dagwieers/ansible | lib/ansible/module_utils/network/nso/nso.py | Python | gpl-3.0 | 26,808 | [
"VisIt"
] | ca325ca2b1a5af81966e34e1aa1f92cd3be61cf0afbb549e507df87a14b5cd3e |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2012 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Software Foundati... | andrebellafronte/stoq | stoqlib/gui/test/test_productionmaterialallocateeditor.py | Python | gpl-2.0 | 2,018 | [
"VisIt"
] | 7aa9eb4f887dc12d59ae774995f95e3f1edf31be1d8a33e30cede6ca529311a9 |
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | goldmedal/spark | python/pyspark/ml/clustering.py | Python | apache-2.0 | 60,631 | [
"Gaussian"
] | 01757be9d0453622bb5a8d40084b0dec7a992453309930954c472156bbfcab7a |
from __future__ import print_function
import json
import logging
import os
import time
import ctk
import numpy
import qt
import vtk
import slicer
from slicer.ScriptedLoadableModule import *
class PickAndPaint(ScriptedLoadableModule):
def __init__(self, parent):
ScriptedLoadableModule.__init__(self, par... | DCBIA-OrthoLab/PickAndPaintExtension | PickAndPaint/PickAndPaint.py | Python | apache-2.0 | 56,605 | [
"VTK"
] | 4a979099eb8c9c8f7199590ad2d6a1f8dea04302d8f5b7d818b71feb405fac5b |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | krafczyk/spack | var/spack/repos/builtin/packages/paraview/package.py | Python | lgpl-2.1 | 8,421 | [
"NetCDF",
"ParaView",
"VTK"
] | b30c372fefd470a86119021a0285cd39a89fe65849b08def0f1e0073b3d7cb05 |
# ----------------------------------------------------------------------------
# Copyright (c) 2016-2020, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file LICENSE, distributed with this software.
# ------------------------------------------------... | qiime2-plugins/feature-table | q2_feature_table/plugin_setup.py | Python | bsd-3-clause | 25,499 | [
"BLAST"
] | 1408326bc87cd997079b5d2a686c932c3f2266886207fde72cd3719735bb6d48 |
"""PURPLE: Purity and ploidy estimates for somatic tumor/normal samples
https://github.com/hartwigmedical/hmftools/tree/master/purity-ploidy-estimator
"""
import csv
import os
import re
import shutil
import subprocess
import toolz as tz
from bcbio import broad, utils
from bcbio.log import logger
from bcbio.distribut... | a113n/bcbio-nextgen | bcbio/structural/purple.py | Python | mit | 16,992 | [
"Amber"
] | 6e833837bc37de0eccd4b7543a7f1ee15f8051791a490ef011160277f813e309 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
'''
Main simulation script for setting up the model producing the data shown in
figure 4, 5 and 6 in:
Multimodal modeling of neural network activity: computing LFP, ECoG, EEG
and MEG signals with LFPy2.0
Espen Hagen, Solveig Næss, Torbjørn V Ness, Gaute T Einev... | LFPy/LFPy | examples/bioRxiv281717/example_parallel_network.py | Python | gpl-3.0 | 25,962 | [
"NEURON"
] | c438cecf064da3ee5cdbbfdfb9e76082c793b7bc30dda6ff2c24b3565f22dfdc |
###########################################################
# Import
###########################################################
# Import
import os
import sys
from Bio import motifs
from pysam import Samfile
from pysam import Fastafile
from MOODS import search
########################################################... | CostaLab/dream-challenge | fullMpbsFootprintTc.py | Python | gpl-3.0 | 6,914 | [
"pysam"
] | a2e537b6248986428b13a4027f66f611be2a113fc0f83bc7315724b6a1af78e8 |
from sympy import (meijerg, I, S, integrate, Integral, oo, gamma, cosh, sinc,
hyperexpand, exp, simplify, sqrt, pi, erf, erfc, sin, cos,
exp_polar, polygamma, hyper, log, expand_func)
from sympy.integrals.meijerint import (_rewrite_single, _rewrite1,
meijerint_indefinite, _... | wxgeo/geophar | wxgeometrie/sympy/integrals/tests/test_meijerint.py | Python | gpl-2.0 | 28,567 | [
"Gaussian"
] | cffddec116ae3cd1682fa2a8ddd39022143f8bf7439e7d8b9856e91584a7827b |
# -*- coding: utf-8 -*-
"""
Models used to implement SAML SSO support in third_party_auth
(inlcuding Shibboleth support)
"""
from __future__ import absolute_import
import json
import logging
import re
from config_models.models import ConfigurationModel, cache
from django.conf import settings
from django.contrib.sites... | gymnasium/edx-platform | common/djangoapps/third_party_auth/models.py | Python | agpl-3.0 | 35,551 | [
"VisIt"
] | 907624d0519f2642256aa31b2b12cb987e520df2a1cc1de64de67cf3f8897322 |
""" Maximally localized Wannier Functions
Find the set of maximally localized Wannier functions
using the spread functional of Marzari and Vanderbilt
(PRB 56, 1997 page 12847).
"""
from time import time
from math import sqrt, pi
from pickle import dump, load
import numpy as np
from ase.parallel import p... | askhl/ase | ase/dft/wannier.py | Python | gpl-2.0 | 30,303 | [
"ASE",
"Gaussian"
] | 45466ad893558132d478a19e55fe321639efdad085f1af55b6e566b89badd686 |
#!/usr/bin/python3
'''
---------------------------------------------------------------------------------------
CrossMap: lift over genomic coordinates between genome assemblies.
Supports BED/BedGraph, GFF/GTF, BAM/SAM, BigWig/Wig, VCF format files.
http://crossmap.sourceforge.net/
--------------------------------------... | ivanamihalek/progesterone | utils/CrossMap.py | Python | gpl-2.0 | 82,502 | [
"pysam"
] | 3b379eaaf8a81639a5b4802d465090c7fe6cdbe94086d92c0889aba1e0e36f0d |
"""
Tests for discussion pages
"""
import datetime
from uuid import uuid4
from nose.plugins.attrib import attr
from pytz import UTC
from flaky import flaky
from common.test.acceptance.tests.discussion.helpers import BaseDiscussionTestCase
from common.test.acceptance.tests.helpers import UniqueCourseTest
from common.... | itsjeyd/edx-platform | common/test/acceptance/tests/discussion/test_discussion.py | Python | agpl-3.0 | 61,987 | [
"VisIt"
] | eea23caeff7cf365876e3c50fb2d2284c998f868e6cb2d8ab674a18a074b39df |
# Copyright (c) 2015, Ecole Polytechnique Federale de Lausanne, Blue Brain Project
# All rights reserved.
#
# This file is part of NeuroM <https://github.com/BlueBrain/NeuroM>
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are ... | liesbethvanherpe/NeuroM | neurom/check/neuron_checks.py | Python | bsd-3-clause | 8,829 | [
"NEURON"
] | be1ac99802210ed66c786a18b56f68ff8a21c3d06bce7471467dc9562689a223 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals, print_function
import logging
import math
import itertools
import warnings
from collections import OrderedDict
import six
import numpy as np
from monty.json ... | gpetretto/pymatgen | pymatgen/electronic_structure/plotter.py | Python | mit | 183,073 | [
"BoltzTrap",
"CRYSTAL",
"Gaussian",
"Mayavi",
"VASP",
"pymatgen"
] | 0cebaae9b560ffcda0fbca2cc04c087961b884d67395244fa3152a1f683ea640 |
"""
Integration tests
==================
Setup:
>>> import os
>>> import time
>>> import sqlite3
>>> import smtplib
>>> from mocker import Mocker, expect, ANY, ARGS
>>>
>>> tmp_dir = 'tmp'
>>> tmp_db = os.path.join(tmp_dir, 'tmpdb.sqlite')
>>> create_tmp = not os.path.isdir(tmp_dir)
>>> if create_tmp:
... os.mkd... | rbp/auth | tests/integration_tests.py | Python | mit | 16,751 | [
"Brian"
] | d009f462e1e848fe1cf7ec902f9da5bbc60407854243543168ebdc732ffd14f5 |
# coding: utf-8
from __future__ import division, unicode_literals
"""
Created on Jul 30, 2012
"""
__author__ = "Shyue Ping Ong"
__copyright__ = "Copyright 2012, The Materials Project"
__version__ = "0.1"
__maintainer__ = "Shyue Ping Ong"
__email__ = "shyuep@gmail.com"
__date__ = "Jul 30, 2012"
import unittest
impo... | rousseab/pymatgen | pymatgen/io/tests/test_smart.py | Python | mit | 2,673 | [
"pymatgen"
] | 13028b9b491e1e33569fdd988dada840cb8b6df92d2551af2583c7f8daf5ac1e |
#!/usr/bin/python
#
# Simple script which convert the FITS headers associated to Brian McLean DSS images into simplified JSON files
# Fabien Chereau fchereau@eso.org
#
import sys
import os
import subprocess
def allDSS():
for i in range(1,895):
str = "/home/fab1/prog/stellarium/util/dssheaderToJSON.py" + " S %i %i"... | Stellarium/stellarium | util/runAllDSS.py | Python | gpl-2.0 | 649 | [
"Brian"
] | 70f6827352d5b612dd7a991ea4f8273bbb2172e083f59c77832d83ef7cdb42a3 |
#
# This source file is part of appleseed.
# Visit http://appleseedhq.net/ for additional information and resources.
#
# This software is released under the MIT license.
#
# Copyright (c) 2016 Haggi Krey, The appleseedhq Organization
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of... | haggi/appleseed-maya | module/scripts/appleseed_maya/osltools.py | Python | mit | 14,236 | [
"VisIt"
] | 741cf1326ac19d48b9f4a28f6f7f7a0359773857a2986d129a9281d388982026 |
# $HeadURL$
__RCSID__ = "$Id$"
from DIRAC.AccountingSystem.Client.Types.BaseAccountingType import BaseAccountingType
import DIRAC
class DataOperation( BaseAccountingType ):
def __init__( self ):
BaseAccountingType.__init__( self )
self.definitionKeyFields = [ ( 'OperationType' , "VARCHAR(32)" ),
... | Sbalbp/DIRAC | AccountingSystem/Client/Types/DataOperation.py | Python | gpl-3.0 | 1,652 | [
"DIRAC"
] | 8b7f80e90a47156393b8388830d3c6e996f45774d9bc45985da83f245fbb908e |
# coding=utf-8
# Copyright 2022 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicab... | google-research/google-research | correct_batch_effects_wdn/forgetting_nuisance.py | Python | apache-2.0 | 55,433 | [
"Gaussian"
] | 73e74593a568ec89269c256a0d4346799094b4d7cb9476b5fe732a56f9fe69cc |
# SimpleCV Cameras & Devices
#load system libraries
from SimpleCV.base import *
from SimpleCV.ImageClass import Image, ImageSet, ColorSpace
from SimpleCV.Display import Display
from SimpleCV.Color import Color
from collections import deque
import time
import ctypes as ct
import subprocess
import cv2
import numpy as np... | hurdlea/SimpleCV | SimpleCV/Camera.py | Python | bsd-3-clause | 132,113 | [
"VisIt"
] | 4d44393c74a46b8c60d39fac0c1dcef248b587525d3ad69730357b5495a415b4 |
import sys
sys.path.insert(1, "../../../")
import h2o
def weights_and_distributions(ip,port):
htable = h2o.upload_file(h2o.locate("smalldata/gbm_test/moppe.csv"))
htable["premiekl"] = htable["premiekl"].asfactor()
htable["moptva"] = htable["moptva"].asfactor()
htable["zon"] = htable["zon"]
# gam... | weaver-viii/h2o-3 | h2o-py/tests/testdir_algos/deeplearning/pyunit_weights_and_distributionsDeeplearning.py | Python | apache-2.0 | 1,122 | [
"Gaussian"
] | 5247a3d85bdd84884d9aae9cf05e3416b80acb8616979746c1bb4f74cd7638ed |
# pycparser: c_lexer.py
#
# CLexer class: lexer for the C language
#
# Copyright (C) 2008-2011, Eli Bendersky
# License: BSD
#-----------------------------------------------------------------
import re
import sys
from .ply import lex
from .ply.lex import TOKEN
class CLexer(object):
""" A lexer for the C languag... | bussiere/pypyjs | website/demo/home/rfk/repos/pypy/lib_pypy/cffi/_pycparser/c_lexer.py | Python | mit | 13,769 | [
"NAMD"
] | b2342ccbda7b0e8a69a58e1479d09d0497556967cbe3008cc7954b5baeb320c5 |
""" Utilities for the MessageQueue package
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
__RCSID__ = "$Id$"
import queue
from DIRAC import S_OK, S_ERROR, gConfig
from DIRAC.ConfigurationSystem.Client.CSAPI import CSAPI
def getMQParamsFromCS(mqURI):
... | ic-hep/DIRAC | src/DIRAC/Resources/MessageQueue/Utilities.py | Python | gpl-3.0 | 3,444 | [
"DIRAC"
] | c34c38df2a38fb4d44abf4b85d33e01e972cdcdcf3db8ef35a3c83a9ccfb2e53 |
"""TransformationCleaningAgent cleans up finalised transformations.
.. literalinclude:: ../ConfigTemplate.cfg
:start-after: ##BEGIN TransformationCleaningAgent
:end-before: ##END
:dedent: 2
:caption: TransformationCleaningAgent options
"""
# # imports
import re
import ast
import os
import errno
from datetime ... | DIRACGrid/DIRAC | src/DIRAC/TransformationSystem/Agent/TransformationCleaningAgent.py | Python | gpl-3.0 | 31,943 | [
"DIRAC"
] | 0f0ba87763f725993d5d322b415d80d86168eeeaf891e2993efd488b688101c2 |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=120 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# ------------------------------------------------------... | marmyshev/transitions | openlp/plugins/songs/lib/xml.py | Python | gpl-2.0 | 34,187 | [
"Brian"
] | fdd5586746e20204289b6125f4cbff41d6c8045060bfa94c1c56b0b9bf4ea8bc |
# -*- coding: utf-8 -*-
"""
equip.bytecode.utils
~~~~~~~~~~~~~~~~~~~~
Utilities for bytecode interaction.
:copyright: (c) 2014 by Romain Gaucher (@rgaucher)
:license: Apache 2, see LICENSE for more details.
"""
import opcode
import types
import dis
from ..utils.log import logger
def iter_decl(decl):
"""... | neuroo/equip | equip/bytecode/utils.py | Python | apache-2.0 | 3,679 | [
"VisIt"
] | 147f72215614d86f6d4f2ec9037ca75a1e9ab09e82f443b219c31265daf95339 |
categorylookup = {'1': 'Planets',
'1.1': 'Planets (Type)',
'1.1.1': 'Terrestrial Planets',
'1.1.2': 'Gas Giant Planets',
'1.2': 'Planets (Feature)',
'1.2.1': 'Planet Surfaces',
'1.2.1.1': 'Mountains',
... | LCOGT/observations | app/images/lookups.py | Python | gpl-3.0 | 8,256 | [
"Galaxy"
] | be8fa64efc5dd13222c9cf2b747588f72da850dd0d1d2de9b665687bdb1c17ee |
from .fgir import *
from .error import *
# Optimization pass interfaces
class Optimization(object):
def visit(self, obj): pass
class FlowgraphOptimization(Optimization):
'''Called on each flowgraph in a FGIR.
May modify the flowgraph by adding or removing nodes (return a new Flowgraph).
If you modify nodes, ... | Planet-Nine/cs207project | pype/optimize.py | Python | mit | 5,807 | [
"VisIt"
] | 57e93eceb9d7fad0f54914e1edacbb7bc418aa10f8c054f7fea73d2a298dca30 |
########################################################################
# File: FTSManagerHandler.py
# Author: Krzysztof.Ciba@NOSPAMgmail.com
# Date: 2013/04/08 14:24:08
########################################################################
"""
:mod: FTSManagerHandler
.. module: FTSManagerHandler
:synopsis: handl... | miloszz/DIRAC | DataManagementSystem/Service/FTSManagerHandler.py | Python | gpl-3.0 | 18,190 | [
"DIRAC"
] | c65d93591470f682b4d9dacba57beb9c3b730de02836d83fa2354abb416ab719 |
#!/usr/bin/env python
########################################
# to modify the NetCDF files
########################################
#First import the netcdf4 library
from netCDF4 import Dataset # http://code.google.com/p/netcdf4-python/
import numpy as np
import sys,getopt
import math
import datetime as DT
import net... | CopyChat/Plotting | Python/MeanBias2D.py | Python | gpl-3.0 | 13,619 | [
"NetCDF"
] | 3510af193bfce6692dc53beaa34d82b64b1c1c32986b32e725bb5052db15f1e6 |
"""
Initialize the EpcAnalyzer object and call specific functions
before writing the netCDF file. Only two functions are being called
in this example, but the user may look up the list of functions available.
"""
from ElectronPhononCoupling import EpcAnalyzer
# Lists of files used
# ===================
ddb_fnames =... | abinit/abinit | scripts/post_processing/ElectronPhononCoupling/Examples/2-1-advanced.py | Python | gpl-3.0 | 2,300 | [
"ABINIT",
"NetCDF"
] | f527173ff3129a8c00cde266710129dbf45f395274db3e4488a0ecac4373f009 |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module implements the Zur and McGill lattice matching algorithm
"""
from typing import Iterator, List
from dataclasses import dataclass
from itertools import product
import numpy as np
from monty.json import MSONab... | vorwerkc/pymatgen | pymatgen/analysis/interfaces/zsl.py | Python | mit | 12,016 | [
"pymatgen"
] | 956dd45d06c9b07722bc3636e963a230454a7f85f2bbd9963076f626c9478c25 |
# coding=utf-8
# Distributed under the MIT software license, see the accompanying
# file LICENSE or http://www.opensource.org/licenses/mit-license.php.
from unittest import TestCase
from mock import Mock, patch
from pyqrllib.pyqrllib import bin2hstr, hstr2bin
from qrl.core.misc import logger
from qrl.core.AddressStat... | theQRL/QRL | tests/services/test_WalletAPIService.py | Python | mit | 35,966 | [
"Jaguar"
] | 25cbc3e5b7dc38898a31c790b8d607c56345d1d71a6ba234e702bba8841467f0 |
# encoding: utf-8
import datetime
from south.db import db
from south.v2 import SchemaMigration
from django.db import models
class Migration(SchemaMigration):
def forwards(self, orm):
# Adding field 'CustomValue.supress'
db.add_column(u'profiles_customvalue', 'supress', self.gf('django.db.... | ProvidencePlan/Profiles | communityprofiles/profiles/oldmigrations/0054_auto__add_field_customvalue_supress.py | Python | mit | 18,259 | [
"MOE"
] | 57b268a88a83c676b2728be26d0b8393a2ebfbd23d88c28c1c455bbe7c5fa95c |
#
# Copyright (C) 2013-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later... | psci2195/espresso-ffans | testsuite/python/virtual_sites_relative.py | Python | gpl-3.0 | 15,216 | [
"ESPResSo"
] | 5b23f6d97929d84fbcd00da4ae3a57054a08ed82fe2bb91caea33194c5e1535d |
from __future__ import absolute_import
from datetime import timedelta
from django.http import HttpResponse
from django.test import TestCase
from django.test.client import RequestFactory
from django.contrib.auth.models import AnonymousUser
from django.contrib.auth import get_user_model
from django.contrib.sessions.bac... | squamous/django-experiments | experiments/tests/test_webuser.py | Python | mit | 15,007 | [
"Brian",
"VisIt"
] | 4bba2d8d694b8a71ea626befd99bc4447009e7ff8a64884f99f30a8fd54ec381 |
# -*- coding: utf-8 -*-
##############################################################################
# 2014 E2OpenPlugins #
# #
# This file is open source software; you can redistribute... | svox1/e2openplugin-OpenWebif | plugin/controllers/models/owibranding.py | Python | gpl-2.0 | 16,710 | [
"Galaxy"
] | b5cf9da477e604eca81983be9ea78a9fe6080355cd0a7d42806415ca625b6196 |
#!/usr/bin/env python
'''
Fly ArduPlane in SITL
AP_FLAKE8_CLEAN
'''
from __future__ import print_function
import math
import os
import signal
import sys
import time
from pymavlink import quaternion
from pymavlink import mavextra
from pymavlink import mavutil
from common import AutoTest
from common import AutoTestT... | lthall/Leonard_ardupilot | Tools/autotest/arduplane.py | Python | gpl-3.0 | 143,031 | [
"Firefly"
] | 522edab649f8d664bf2583686747cd327222dc26d37155e240c88b13b8316b74 |
"""
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 3 of the License, or
(at your option) any later version.
Written (W) 2013 Heiko Strathmann
Written (W) 2013 Dino Sejdinovic
"""
fro... | karlnapf/kameleon-mcmc | kameleon_mcmc/paper_figures/GFunction.py | Python | bsd-2-clause | 5,402 | [
"Gaussian"
] | 423ccf5186a1d9a03e161092f81b990fd06fb531d9cbd4a0e79dab16178b1e4b |
from erukar.system.engine import MaterialGood
class NegaciteCrystal(MaterialGood):
BaseName = "Negacite Crystal"
BriefDescription = "a chunk of crystalline Negacite"
BasePricePerSingle = 97
WeightPerSingle = 0.3
| etkirsch/legends-of-erukar | erukar/content/inventory/materials/raw/NegaciteCrystal.py | Python | agpl-3.0 | 229 | [
"CRYSTAL"
] | 31edaef4922054a564c66c597b470175c5ee0e0343c127ae9fa889668f479747 |
#!/usr/bin/env python3.5
"""Script to post to AutoLovecraft.tumblr.com. Really rough sketch of a
script here. Not really meant for public use. Based on my earlier script to
do a similar job for the IrishLitDiscourses Tumblr account; see
https://github.com/patrick-brian-mooney/IrishLitDiscourses-python
The fact that th... | patrick-brian-mooney/AutoLovecraft-python | generate.py | Python | gpl-3.0 | 5,070 | [
"Brian"
] | 2bdada24c97bf6ba41d5ec2a34c06504a4f930e9ebdb2092173f5aa9db8d421d |
import logging
import os
from django.conf import settings
from django.contrib.staticfiles.testing import StaticLiveServerTestCase
from django.test import modify_settings
from selenium.webdriver.chrome.options import Options
from splinter import Browser
# On ubuntu with chromium installed as snap, we also need to use ... | meine-stadt-transparent/meine-stadt-transparent | mainapp/tests/live/chromedriver_test_case.py | Python | mit | 3,430 | [
"VisIt"
] | f013777a3e2a34ff7d8c4f1d272fedca27c07e11197065b495803a65f9697db9 |
from future import standard_library
standard_library.install_aliases()
from builtins import str
import logging
import pycurl
import io
import re
import os
from datetime import datetime
from biomaj.utils import Utils
from biomaj.download.interface import DownloadInterface
try:
from io import BytesIO
except ImportE... | markiskander/biomaj | biomaj/download/ftp.py | Python | agpl-3.0 | 12,091 | [
"BLAST"
] | 893e0f1309f97daf93fc326b29abcf708d269e4018694870e87fc7a3627b00ac |
#!/usr/bin/env python
#
# Copyright 2013 Tristan Bereau and Christian Kramer
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | MMunibas/FittingWizard | scripts/pun2charmmlpun.py | Python | bsd-3-clause | 2,122 | [
"CHARMM"
] | 22355b78e0558b9dffa60f87201c4972ad5d7d2b2db932b6dce4ba82c6e0c2d6 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.db import models, migrations
import pootle.core.mixins.treeitem
class Migration(migrations.Migration):
dependencies = [
('pootle_app', '0001_initial'),
]
operations = [
migrations.CreateModel(
name='... | claudep/pootle | pootle/apps/pootle_language/migrations/0001_initial.py | Python | gpl-3.0 | 2,056 | [
"VisIt"
] | b7c5c6192d8c8cea45ac87c1897e64bd6f80a3805f63a9786ecfb1d027fcf86e |
from typing import Any, Dict
EMOJI_NAME_MAPS: Dict[str, Dict[str, Any]] = {
# seems like best emoji for happy
"1f600": {"canonical_name": "grinning", "aliases": ["happy"]},
"1f603": {"canonical_name": "smiley", "aliases": []},
# the Google emoji for this is not great, so made People/9 'smile' and
#... | eeshangarg/zulip | tools/setup/emoji/emoji_names.py | Python | apache-2.0 | 95,930 | [
"CRYSTAL",
"Octopus"
] | cfb6554224f432a6f44864d83ab326f000a9ca7f7e3c32abd455ca7359f27f6f |
#
# Copyright 2016 The BigDL Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | intel-analytics/BigDL | python/chronos/src/bigdl/chronos/autots/model/__init__.py | Python | apache-2.0 | 4,916 | [
"ORCA"
] | 2c7b7ef22dff89165707fd1ae93ba053ab200848a728ae7896f4b9f68d5b49d7 |
#!/usr/bin/env python
# ----------------------------------------
# scikit-ribo
# ----------------------------------------
# pre-processing module
# ----------------------------------------
# author: Han Fang
# contact: hanfang.cshl@gmail.com
# website: hanfang.github.io
# date: 3/28/2017
# ----------------------------... | hanfang/scikit-ribo | scikit_ribo/scikit-ribo-build.py | Python | gpl-2.0 | 5,250 | [
"pysam"
] | 3a4251db7257aa8b90fe2134343a776cbaed6d540f02a866daa4747f5d2e228b |
########################################################################
# $HeadURL$
# File : InputDataByProtocol.py
# Author : Stuart Paterson
########################################################################
""" The Input Data By Protocol module wraps around the Replica Management
components to provid... | vmendez/DIRAC | WorkloadManagementSystem/Client/InputDataByProtocol.py | Python | gpl-3.0 | 11,603 | [
"DIRAC"
] | 0fca41e35828c004ac1d9ec65b2d72c647abb6d2a62e90dd616d5d664810595a |
from __future__ import division, print_function
import contextlib
import os
import random
import shutil
import subprocess
import tempfile
import numpy
import scipy.linalg as linalg
import sympy
from opt_utils import rand_matrix
class SDP:
"""Class to generate and test SDP problems. Normally, only methods
... | jre21/SDP | sdp.py | Python | gpl-3.0 | 19,989 | [
"Mayavi"
] | e20ee7862c8057834449bb70f06d1aada3fda589a62b4cf187156a50eea86c1d |
# -*- coding: utf-8 -*-
""" Contains GandiModule and GandiContextHelper classes.
GandiModule class is used by commands modules.
GandiContextHelper class is used as click context for commands.
"""
from __future__ import print_function
import os
import sys
import time
import os.path
from datetime import datetime
from s... | grigouze/gandi.cli | gandi/cli/core/base.py | Python | gpl-3.0 | 13,404 | [
"VisIt"
] | 7f1737133b0b7b43880f198f646e39cf905c56cd6eb9d2163e63093edaca4694 |
import imp
import re
_NOT_USED1 = None
NOT_USED2 = None
def getModules(n = 0, j = 3) :
"Return list of modules by removing .py from each entry."
for m in unknownList :
pass
def jjj(self) :
import sys
print sys.argv
def jjj2(a, b = None, c = None) :
pass
def ddd(a, *args):
jjj2()
... | stanlyxiang/incubator-hawq | tools/bin/pythonSrc/pychecker-0.8.18/test_input/test1.py | Python | apache-2.0 | 1,403 | [
"ADF"
] | 565fd40e2d6b6bb5b81f10fb9888d33827308ebb0cd5bc26d27b8344b47207b1 |
from toontown.toonbase.TTLocalizerEnglishProperty import *
from toontown.catalog import CatalogAccessoryItemGlobals
from otp.otpbase import OTPLocalizer as OL
OL.SpeedChatStaticText = OL.SpeedChatStaticTextToontown.copy()
for key in OL.SpeedChatStaticTextCommon.iterkeys():
OL.SpeedChatStaticText[key] = OL.SpeedChat... | silly-wacky-3-town-toon/SOURCE-COD | toontown/toonbase/TTLocalizerEnglish.py | Python | apache-2.0 | 503,899 | [
"Amber",
"BLAST",
"Brian",
"CRYSTAL",
"MOE",
"Octopus",
"SIESTA",
"VisIt"
] | 8a3bd3f4501598e66984ed646cfe02cd7e0e536975c4df8fb8c2ba3310e9aa31 |
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgpl-2.1.html
import sys
i... | harterj/moose | python/TestHarness/tests/test_CSVValidationTester.py | Python | lgpl-2.1 | 1,959 | [
"MOOSE"
] | e305422e440a75296daeb7675e136e9728f23d0deeae8fa1a1caa3561234e9b3 |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#
# LAMMPS documentation build configuration file, created by
# sphinx-quickstart on Sat Sep 6 14:20:08 2014.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# aut... | ovilab/atomify-lammps | libs/lammps/doc/utils/sphinx-config/conf.py | Python | gpl-3.0 | 9,820 | [
"LAMMPS"
] | a873b1d1e77772918f6dd33c3135e2fddf550682ff7fbb4b8af529874fd6bc69 |
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