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  1. paper-releases/pbisc-diffusion/updates/20260930T065633Z-summary-deck-scsemi-final/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec04_sle_numbers.csv +65 -0
  2. paper-releases/pbisc-diffusion/updates/20260930T065633Z-summary-deck-scsemi-final/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec04_sle_per_celltype.csv +37 -0
  3. paper-releases/pbisc-diffusion/updates/20260930T065633Z-summary-deck-scsemi-final/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec05_behcet_direction.csv +86 -0
  4. paper-releases/pbisc-diffusion/updates/20260930T065633Z-summary-deck-scsemi-final/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec05_cells_metrics.csv +29 -0
paper-releases/pbisc-diffusion/updates/20260930T065633Z-summary-deck-scsemi-final/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec04_sle_numbers.csv ADDED
@@ -0,0 +1,65 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ key,value,source
2
+ scSemiProfiler run used in SLE benchmark,sle_primary_cap1500_default_budget_venvscvi_gpu2_20260629,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/MANIFEST.json
3
+ scSemiProfiler representative donors with real sc,14 (10 SLE / 4 HC),/home/sj_server_1/PBISC/immun-pbmc-fm/bulk2sc-paper/results/scsemiprofiler_vs_pbisc_heldout_20260629/inputs/004_A_GSE135779_SLE_PBMC/primary_kmeans/input_manifest.json
4
+ scSemiProfiler representative-cell cap per donor,1500,/home/sj_server_1/PBISC/immun-pbmc-fm/bulk2sc-paper/results/scsemiprofiler_vs_pbisc_heldout_20260629/outputs/scsemiprofiler/004_A_GSE135779_SLE_PBMC/primary_kmeans/sle_primary_cap1500_default_budget_venvscvi_gpu2_20260629/run_config.json
5
+ real target cells total,251179,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/evaluation_manifest.json
6
+ real cells T cell,158364 (63.0%),/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/evaluation_manifest.json
7
+ real cells B cell,25048 (10.0%),/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/evaluation_manifest.json
8
+ real cells Monocyte,44292 (17.6%),/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/evaluation_manifest.json
9
+ real cells NK cell,16002 (6.4%),/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/evaluation_manifest.json
10
+ real cells DC,3550 (1.4%),/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/evaluation_manifest.json
11
+ real cells Other,3923 (1.6%),/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/evaluation_manifest.json
12
+ "DC cells per donor, diffusion_f016k_e16 (base seed for diffusion)",mean 15.0 of 1500; 41/42 donors with any,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/composition_long.csv
13
+ "DC cells per donor, PBISC-VAE (base seed for diffusion)",mean 13.0 of 1500; 42/42 donors with any,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/composition_long.csv
14
+ "DC cells per donor, scSemiProfiler (base seed for diffusion)",mean 81.1 of 1500; 42/42 donors with any,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/composition_long.csv
15
+ "DC cells per donor, real (base seed for diffusion)",mean 84.5 of 5980; 42/42 donors with any,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/composition_long.csv
16
+ donors,42 (30 SLE / 12 HC),/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_row_manifest.csv
17
+ logfc_r 1006: broadcast (input bulk logFC copied to every type),0.677,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/summary_mean_r_top50.csv
18
+ logfc_r 1006: PBISC 5-seed mean,0.371,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
19
+ logfc_r 1006: PBISC 5-seed SD,0.018,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
20
+ logfc_r 1006: PBISC-VAE,0.374,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
21
+ logfc_r 1006: scSemiProfiler,0.318,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
22
+ top50 1006: broadcast (input bulk logFC copied to every type),113,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/summary_mean_r_top50.csv
23
+ top50 1006: PBISC 5-seed mean,76.2,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
24
+ top50 1006: PBISC 5-seed SD,3.7,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
25
+ top50 1006: PBISC-VAE,78.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
26
+ top50 1006: scSemiProfiler,56.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
27
+ logfc_r 2279: broadcast (input bulk logFC copied to every type),0.643,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/summary_mean_r_top50.csv
28
+ logfc_r 2279: PBISC 5-seed mean,0.333,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
29
+ logfc_r 2279: PBISC 5-seed SD,0.016,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
30
+ logfc_r 2279: PBISC-VAE,0.334,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
31
+ logfc_r 2279: scSemiProfiler,0.27,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
32
+ top50 2279: broadcast (input bulk logFC copied to every type),117,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/summary_mean_r_top50.csv
33
+ top50 2279: PBISC 5-seed mean,82.2,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
34
+ top50 2279: PBISC 5-seed SD,3.5,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
35
+ top50 2279: PBISC-VAE,80.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
36
+ top50 2279: scSemiProfiler,56.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
37
+ top-50 truth list size 1006,262,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
38
+ top-50 truth list size 2279,265,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_2279/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
39
+ comp_l1: PBISC 5-seed mean,0.181,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
40
+ comp_l1: PBISC 5-seed SD,0.0031,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
41
+ comp_l1: PBISC-VAE,0.177,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
42
+ comp_l1: scSemiProfiler,0.264,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
43
+ logFC_pearson T cell 1006: PBISC 5-seed mean / VAE / scSemi,0.594 / 0.612 / 0.473,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
44
+ logFC_pearson B cell 1006: PBISC 5-seed mean / VAE / scSemi,0.428 / 0.345 / 0.339,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
45
+ logFC_pearson Monocyte 1006: PBISC 5-seed mean / VAE / scSemi,0.449 / 0.467 / 0.292,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
46
+ logFC_pearson NK cell 1006: PBISC 5-seed mean / VAE / scSemi,0.361 / 0.355 / 0.256,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
47
+ logFC_pearson DC 1006: PBISC 5-seed mean / VAE / scSemi,0.293 / 0.339 / 0.281,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
48
+ logFC_pearson Other 1006: PBISC 5-seed mean / VAE / scSemi,0.102 / 0.126 / 0.266,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
49
+ top50_overlap_count T cell 1006: PBISC 5-seed mean / VAE / scSemi,25.4 / 26 / 17,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
50
+ top50_overlap_count B cell 1006: PBISC 5-seed mean / VAE / scSemi,17.8 / 14 / 13,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
51
+ top50_overlap_count Monocyte 1006: PBISC 5-seed mean / VAE / scSemi,19.0 / 22 / 8,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
52
+ top50_overlap_count NK cell 1006: PBISC 5-seed mean / VAE / scSemi,11.4 / 6 / 5,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
53
+ top50_overlap_count DC 1006: PBISC 5-seed mean / VAE / scSemi,2.6 / 10 / 9,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
54
+ top50_overlap_count Other 1006: PBISC 5-seed mean / VAE / scSemi,0.0 / 0 / 4,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
55
+ Other truth top list size (top-50 panel),12,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
56
+ logFC r seed SD T cell 1006,0.018,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
57
+ logFC r seed SD B cell 1006,0.0361,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
58
+ logFC r seed SD Monocyte 1006,0.0334,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
59
+ logFC r seed SD NK cell 1006,0.0241,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
60
+ logFC r seed SD DC 1006,0.0574,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
61
+ logFC r seed SD Other 1006,0.0561,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
62
+ Other logFC r 1006: broadcast / PBISC 5-seed / VAE / scSemi,0.485 / 0.102 / 0.126 / 0.266,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
63
+ mean logFC r 1006 (6 types incl. Other): broadcast / PBISC 5-seed / VAE / scSemi,0.677 / 0.371 / 0.374 / 0.318,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/summary_mean_r_top50.csv
64
+ "broadcast r per type 1006 (T,B,Mono,NK,DC) range",0.66-0.82,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
65
+ partial r 1006: PBISC 5-seed mean / VAE / scSemi,0.208 / 0.207 / 0.167,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/residual_specificity_summary.csv
paper-releases/pbisc-diffusion/updates/20260930T065633Z-summary-deck-scsemi-final/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec04_sle_per_celltype.csv ADDED
@@ -0,0 +1,37 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ axis_genes,metric,celltype,method,value,seed_sd,real_cell_share,source
2
+ 1006,logFC_pearson,T cell,PBISC 6k 5-seed mean,0.5939658914718996,0.017984822057591335,0.6304826438515959,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
3
+ 1006,logFC_pearson,T cell,PBISC-VAE,0.6120931230708884,,0.6304826438515959,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
4
+ 1006,logFC_pearson,T cell,scSemiProfiler,0.4732406545923902,,0.6304826438515959,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
5
+ 1006,logFC_pearson,B cell,PBISC 6k 5-seed mean,0.4284912263950824,0.03606402307061042,0.09972171240430132,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
6
+ 1006,logFC_pearson,B cell,PBISC-VAE,0.3454434132713715,,0.09972171240430132,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
7
+ 1006,logFC_pearson,B cell,scSemiProfiler,0.3389517989307964,,0.09972171240430132,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
8
+ 1006,logFC_pearson,Monocyte,PBISC 6k 5-seed mean,0.44946236830281927,0.033404376214340586,0.17633639754915817,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
9
+ 1006,logFC_pearson,Monocyte,PBISC-VAE,0.4666191731756177,,0.17633639754915817,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
10
+ 1006,logFC_pearson,Monocyte,scSemiProfiler,0.2919853598203729,,0.17633639754915817,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
11
+ 1006,logFC_pearson,NK cell,PBISC 6k 5-seed mean,0.3607223505080821,0.024088206588902265,0.06370755516981913,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
12
+ 1006,logFC_pearson,NK cell,PBISC-VAE,0.3550560613632358,,0.06370755516981913,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
13
+ 1006,logFC_pearson,NK cell,scSemiProfiler,0.2561452598619544,,0.06370755516981913,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
14
+ 1006,logFC_pearson,DC,PBISC 6k 5-seed mean,0.2929133213063715,0.05744012029427325,0.014133347134911756,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
15
+ 1006,logFC_pearson,DC,PBISC-VAE,0.3393093861161725,,0.014133347134911756,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
16
+ 1006,logFC_pearson,DC,scSemiProfiler,0.2809317373955735,,0.014133347134911756,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
17
+ 1006,logFC_pearson,Other,PBISC 6k 5-seed mean,0.10213249694534068,0.0561122628197401,0.015618343890213751,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
18
+ 1006,logFC_pearson,Other,PBISC-VAE,0.1264099945717724,,0.015618343890213751,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
19
+ 1006,logFC_pearson,Other,scSemiProfiler,0.2662074091651877,,0.015618343890213751,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
20
+ 1006,top50_overlap_count,T cell,PBISC 6k 5-seed mean,25.4,0.8944271909999159,0.6304826438515959,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
21
+ 1006,top50_overlap_count,T cell,PBISC-VAE,26.0,,0.6304826438515959,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
22
+ 1006,top50_overlap_count,T cell,scSemiProfiler,17.0,,0.6304826438515959,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
23
+ 1006,top50_overlap_count,B cell,PBISC 6k 5-seed mean,17.8,1.3038404810405297,0.09972171240430132,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
24
+ 1006,top50_overlap_count,B cell,PBISC-VAE,14.0,,0.09972171240430132,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
25
+ 1006,top50_overlap_count,B cell,scSemiProfiler,13.0,,0.09972171240430132,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
26
+ 1006,top50_overlap_count,Monocyte,PBISC 6k 5-seed mean,19.0,1.0,0.17633639754915817,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
27
+ 1006,top50_overlap_count,Monocyte,PBISC-VAE,22.0,,0.17633639754915817,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
28
+ 1006,top50_overlap_count,Monocyte,scSemiProfiler,8.0,,0.17633639754915817,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
29
+ 1006,top50_overlap_count,NK cell,PBISC 6k 5-seed mean,11.4,0.8944271909999157,0.06370755516981913,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
30
+ 1006,top50_overlap_count,NK cell,PBISC-VAE,6.0,,0.06370755516981913,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
31
+ 1006,top50_overlap_count,NK cell,scSemiProfiler,5.0,,0.06370755516981913,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
32
+ 1006,top50_overlap_count,DC,PBISC 6k 5-seed mean,2.6,2.4083189157584592,0.014133347134911756,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
33
+ 1006,top50_overlap_count,DC,PBISC-VAE,10.0,,0.014133347134911756,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
34
+ 1006,top50_overlap_count,DC,scSemiProfiler,9.0,,0.014133347134911756,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
35
+ 1006,top50_overlap_count,Other,PBISC 6k 5-seed mean,0.0,0.0,0.015618343890213751,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
36
+ 1006,top50_overlap_count,Other,PBISC-VAE,0.0,,0.015618343890213751,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
37
+ 1006,top50_overlap_count,Other,scSemiProfiler,4.0,,0.015618343890213751,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
paper-releases/pbisc-diffusion/updates/20260930T065633Z-summary-deck-scsemi-final/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec05_behcet_direction.csv ADDED
@@ -0,0 +1,86 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ arm,metric,depth,seed,value_pp,source
2
+ raw,share_CD16_gap,native,s0,-3.71728205407723,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
3
+ raw,share_CD16_gap,native,s1,-3.67730020369536,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
4
+ raw,share_CD16_gap,native,s2,-4.4575983421542595,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
5
+ raw,share_CD16_gap,native,s3,-4.17810981360363,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
6
+ raw,share_CD16_gap,native,s4,-3.82711651517914,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
7
+ raw,share_CD16_gap,native,mean,-3.9714813857419236,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
8
+ raw,share_CD16_gap,native,sd,0.3357849335712864,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
9
+ raw,share_CD16_gap,native,n_positive,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
10
+ raw,A_share_gap,native,s0,-0.58012704310586,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
11
+ raw,A_share_gap,native,s1,-0.7239740366798,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
12
+ raw,A_share_gap,native,s2,-0.96156534857789,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
13
+ raw,A_share_gap,native,s3,-0.6823499803064199,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
14
+ raw,A_share_gap,native,s4,-0.89482367175406,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
15
+ raw,A_share_gap,native,mean,-0.768568016084806,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
16
+ raw,A_share_gap,native,sd,0.1566210665330723,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
17
+ raw,A_share_gap,native,n_positive,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
18
+ tpm,share_CD16_gap,native,s0,-2.06091426699033,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
19
+ tpm,share_CD16_gap,native,mean,-2.06091426699033,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
20
+ tpm,share_CD16_gap,native,sd,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
21
+ tpm,share_CD16_gap,native,n_positive,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
22
+ tpm,A_share_gap,native,s0,-0.44820067280630993,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
23
+ tpm,A_share_gap,native,mean,-0.44820067280630993,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
24
+ tpm,A_share_gap,native,sd,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
25
+ tpm,A_share_gap,native,n_positive,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
26
+ refcal_aifi,share_CD16_gap,native,s0,4.62596540619475,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
27
+ refcal_aifi,share_CD16_gap,native,s1,5.14464716793189,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
28
+ refcal_aifi,share_CD16_gap,native,s2,5.20343372495256,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
29
+ refcal_aifi,share_CD16_gap,native,s3,4.41566449270581,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
30
+ refcal_aifi,share_CD16_gap,native,s4,4.7833505005625,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
31
+ refcal_aifi,share_CD16_gap,native,mean,4.834612258469501,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
32
+ refcal_aifi,share_CD16_gap,native,sd,0.336834316263327,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
33
+ refcal_aifi,share_CD16_gap,native,n_positive,5.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
34
+ refcal_aifi,A_share_gap,native,s0,1.44282749953975,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
35
+ refcal_aifi,A_share_gap,native,s1,1.45459927817659,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
36
+ refcal_aifi,A_share_gap,native,s2,1.5277276901253,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
37
+ refcal_aifi,A_share_gap,native,s3,1.4317689692819,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
38
+ refcal_aifi,A_share_gap,native,s4,0.94095301888117,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
39
+ refcal_aifi,A_share_gap,native,mean,1.359575291200942,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
40
+ refcal_aifi,A_share_gap,native,sd,0.23700857136139572,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
41
+ refcal_aifi,A_share_gap,native,n_positive,5.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
42
+ refcal_aida,share_CD16_gap,native,s0,0.36984940998800997,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
43
+ refcal_aida,share_CD16_gap,native,mean,0.36984940998800997,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
44
+ refcal_aida,share_CD16_gap,native,sd,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
45
+ refcal_aida,share_CD16_gap,native,n_positive,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
46
+ refcal_aida,A_share_gap,native,s0,-0.24994776353661,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
47
+ refcal_aida,A_share_gap,native,mean,-0.24994776353661,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
48
+ refcal_aida,A_share_gap,native,sd,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
49
+ refcal_aida,A_share_gap,native,n_positive,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
50
+ pseudo_ceiling,share_CD16_gap,native,s0,3.50173499869764,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
51
+ pseudo_ceiling,share_CD16_gap,native,s1,4.849376499536881,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
52
+ pseudo_ceiling,share_CD16_gap,native,s2,7.679695492811691,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
53
+ pseudo_ceiling,share_CD16_gap,native,s3,6.444680690058149,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
54
+ pseudo_ceiling,share_CD16_gap,native,s4,4.9489672438587,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
55
+ pseudo_ceiling,share_CD16_gap,native,mean,5.484890984992612,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
56
+ pseudo_ceiling,share_CD16_gap,native,sd,1.609531274083029,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
57
+ pseudo_ceiling,share_CD16_gap,native,n_positive,5.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
58
+ pseudo_ceiling,A_share_gap,native,s0,0.91889501270414,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
59
+ pseudo_ceiling,A_share_gap,native,s1,1.1533706059820201,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
60
+ pseudo_ceiling,A_share_gap,native,s2,2.37181897456489,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
61
+ pseudo_ceiling,A_share_gap,native,s3,3.08725345866561,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
62
+ pseudo_ceiling,A_share_gap,native,s4,1.56522549819188,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
63
+ pseudo_ceiling,A_share_gap,native,mean,1.819312710021708,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
64
+ pseudo_ceiling,A_share_gap,native,sd,0.8988503965096267,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
65
+ pseudo_ceiling,A_share_gap,native,n_positive,5.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
66
+ observed,share_CD16_gap,native,-,4.93513411070403,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
67
+ observed,A_share_gap,native,-,1.32412529640814,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
68
+ raw,A_share_gap,common,mean,-0.08125579979224,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/refcal_scoring/behcet/out/summary/seeds_stats.csv
69
+ raw,A_share_gap,common,sd,0.08703702366411001,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/refcal_scoring/behcet/out/summary/seeds_stats.csv
70
+ raw,A_share_gap,common,n_positive,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/refcal_scoring/behcet/out/summary/seeds_stats.csv
71
+ refcal_aifi,A_share_gap,common,mean,0.9010764439977901,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/refcal_scoring/behcet/out/summary/seeds_stats.csv
72
+ refcal_aifi,A_share_gap,common,sd,0.06873693077026,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/refcal_scoring/behcet/out/summary/seeds_stats.csv
73
+ refcal_aifi,A_share_gap,common,n_positive,5.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/refcal_scoring/behcet/out/summary/seeds_stats.csv
74
+ observed,A_share_gap,common,-,1.2147155970764398,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/refcal_scoring/behcet/out/summary/comparison_table.csv
75
+ raw,share_CD16_gap,common,s0,-3.5943603625374902,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/refcal_scoring/behcet/out/summary/comparison_table.csv
76
+ refcal_aifi,share_CD16_gap,common,s0,4.9290056853955395,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/refcal_scoring/behcet/out/summary/comparison_table.csv
77
+ observed,share_CD16_gap,common,-,4.93513411070403,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/refcal_scoring/behcet/out/summary/comparison_table.csv
78
+ raw,A_share_gap,common,seed_pooled_perm_p,0.6028383381324558,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/refcal_scoring/behcet/out/summary/SUMMARY.json seeds.seed_pooled.raw.E_share_common
79
+ observed,share_CD16_gap,native,mw_p_descriptive,0.0285714285714285,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/behcet_probe/analysis/out/rules_groups/c1q_by_monocyte_subtype_tests.csv
80
+ observed,A_share_gap,native,mw_p_descriptive,0.4857142857142857,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/behcet_probe/analysis/out/rules_groups/c1q_by_monocyte_subtype_tests.csv
81
+ observed,mono_library_BD_over_HC,native,s0,0.964,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_monocyte_depth_by_group.csv
82
+ raw,mono_library_BD_over_HC,native,s0,0.741,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_monocyte_depth_by_group.csv
83
+ refcal_aifi,mono_library_BD_over_HC,native,s0,0.864,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_monocyte_depth_by_group.csv
84
+ refcal_aida,mono_library_BD_over_HC,native,s0,1.004,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_monocyte_depth_by_group.csv
85
+ refcal_train,mono_library_BD_over_HC,native,s0,0.66,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_monocyte_depth_by_group.csv
86
+ pseudo_ceiling,mono_library_BD_over_HC,native,s0,0.77,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_monocyte_depth_by_group.csv
paper-releases/pbisc-diffusion/updates/20260930T065633Z-summary-deck-scsemi-final/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec05_cells_metrics.csv ADDED
@@ -0,0 +1,29 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ arm,metric,value,source
2
+ raw,monocyte_pct,30.554517133956388,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/immicro_table.csv
3
+ raw,precision,0.3630529595015576,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/immicro_table.csv
4
+ raw,coverage,0.083613707165109,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/immicro_table.csv
5
+ raw,comp_L1,0.4552049769720906,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/immicro_table.csv
6
+ tpm,monocyte_pct,34.29906542056075,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/immicro_table.csv
7
+ tpm,precision,0.8745171339563863,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/immicro_table.csv
8
+ tpm,coverage,0.4595015576323987,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/immicro_table.csv
9
+ tpm,comp_L1,0.4558918621288965,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/immicro_table.csv
10
+ refcal,monocyte_pct,17.67601246105919,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/immicro_table.csv
11
+ refcal,precision,0.765607476635514,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/immicro_table.csv
12
+ refcal,coverage,0.0806853582554517,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/immicro_table.csv
13
+ refcal,comp_L1,0.137454319866968,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/immicro_table.csv
14
+ refcal_aida,monocyte_pct,17.320872274143305,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/immicro_table.csv
15
+ refcal_aida,precision,0.9075389408099688,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/immicro_table.csv
16
+ refcal_aida,coverage,0.3705295950155763,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/immicro_table.csv
17
+ refcal_aida,comp_L1,0.1246623683026651,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/immicro_table.csv
18
+ pseudo,monocyte_pct,14.330218068535824,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/immicro_table.csv
19
+ pseudo,precision,0.924859813084112,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/immicro_table.csv
20
+ pseudo,coverage,0.5068535825545172,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/immicro_table.csv
21
+ pseudo,comp_L1,0.1663566375577628,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/immicro_table.csv
22
+ real_R2,monocyte_pct,16.735202492211837,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/immicro_table.csv
23
+ real_R2,precision,0.9627414330218068,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/immicro_table.csv
24
+ real_R2,coverage,0.9997507788161992,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/immicro_table.csv
25
+ null,comp_L1_LOO_null,0.1606372707722086,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/immicro_table.csv (column comp_L1_obs_LOO_null)
26
+ raw,pseudo_T_cells_labelled_monocyte_under_raw,0.19152234575009966,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/umap/cell_immicro_5arm/tables/c_label_transition_pseudo_to_raw_counts.csv
27
+ raw,n_pseudo_T_cells,112885.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/umap/cell_immicro_5arm/tables/c_label_transition_pseudo_to_raw_counts.csv
28
+ raw,n_pseudo_T_to_monocyte,21620.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/umap/cell_immicro_5arm/tables/c_label_transition_pseudo_to_raw_counts.csv
29
+ raw,n_cells_in_transition_table,160500.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/umap/cell_immicro_5arm/tables/c_label_transition_pseudo_to_raw_counts.csv