Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/zs_raw_s13/rule_A/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+zs_raw_s13,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.10519026393891284,0.16300247196399198,0.7777777777777778,0.5555555555555556,0.30078125,9,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.23723534389446382,0.07907844796482127,0.1482324942713628,-0.3344602493890193,0.37983575683467935,-0.07716496407349246,0.2875454919513182
+zs_raw_s13,BD,ifng_response_log2fc_high_vs_other,-0.9677242483493623,-0.8847103153001608,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.290949909482999,0.09698330316099966,0.23184000499260538,-1.6306973990537643,-0.6558924548457897,-1.1913681464843868,-0.7440803502143378
+zs_raw_s13,BD,ifng_response_c1q_high_minus_other,0.06085524467748418,0.0654927215563122,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.022511822380873563,0.007503940793624521,0.03098746353117693,0.026593065616389244,0.09230560269824056,0.04355112617705881,0.07815936317790956
+zs_raw_s13,BD,proinflammatory_log2fc_bgcorr_high_vs_other,-0.2335682169945147,-0.26981280054744733,0.1111111111111111,-0.7777777777777778,0.0078125,9,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.14558248726370435,0.04852749575456811,0.19329746854760668,-0.45191912940532575,0.029011585282643085,-0.34547282287565134,-0.12166361111337802
+zs_raw_s13,BD,proinflammatory_log2fc_high_vs_other,-1.0820054269360442,-1.0899737310095687,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.15336966131052876,0.05112322043684292,0.19953295953048067,-1.295387210102764,-0.8259063771301124,-1.199895784668358,-0.9641150692037302
+zs_raw_s13,BD,proinflammatory_c1q_high_minus_other,-0.0307260164628174,-0.028155469152198465,0.0,-1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.007311073269721894,0.0024370244232406312,0.009677894582367952,-0.043315375430380165,-0.021557623061830455,-0.03634580486040384,-0.025106228065230957
+zs_raw_s13,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.12661721428923306,0.10207115060214782,0.7777777777777778,0.5555555555555556,0.0390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.1421846751376625,0.04739489171255417,0.20402233599707603,-0.07511329118119697,0.32235368601281955,0.017324398012529496,0.23591003056593662
+zs_raw_s13,BD,phagocytosis_antigen_log2fc_high_vs_other,-0.7469555157361256,-0.7715599854471356,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.16265641559793775,0.05421880519931258,0.2267941359522555,-0.9603196659576819,-0.4598280530051235,-0.8719843047315696,-0.6219267267406816
+zs_raw_s13,BD,phagocytosis_antigen_c1q_high_minus_other,0.10979791198758022,0.11281511366866415,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.02506475279180707,0.008354917597269024,0.026858351033835715,0.06382524902336628,0.1530400247560636,0.0905314374589878,0.12906438651617264
+zs_raw_s13,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.4729434659904532,1.6533768100236192,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.3607464174726601,0.12024880582422004,0.47993877031991805,0.8806554332504846,1.7847092666998816,1.195649222506439,1.7502377094744674
+zs_raw_s13,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.642900194340526,0.8227031848661969,0.8888888888888888,0.7777777777777778,0.0078125,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.4182223925987345,0.13940746419957817,0.6823361241385972,-0.08237988303861954,1.0833933689896256,0.32142600541797206,0.96437438326308
+zs_raw_s13,BD,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.7632363015469753,0.7656576692425652,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.08306929713656763,0.027689765712189212,0.094454036025716,0.6144848680603199,0.8931186866827493,0.6993835873118325,0.8270890157821181
+zs_raw_s13,HC,ifng_response_log2fc_bgcorr_high_vs_other,0.11186269677270366,0.1413427732760263,0.8,0.6,0.10546875,10,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.24166684027942437,0.07642176502191035,0.15430403236439028,-0.4024052201459375,0.5377612766560578,-0.061015346365292156,0.2847407399106995
+zs_raw_s13,HC,ifng_response_log2fc_high_vs_other,-0.8891486686176112,-0.8106275741000999,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.42709925296579876,0.13506064263283488,0.23297875424001135,-1.7405520254436089,-0.4163339150273861,-1.1946770687616073,-0.5836202684736151
+zs_raw_s13,HC,ifng_response_c1q_high_minus_other,0.06631064653312094,0.06968249329269957,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.02891193137400911,0.009142755469635028,0.045152498919611275,0.021597416297051975,0.10850860209700497,0.04562829675977359,0.08699299630646828
+zs_raw_s13,HC,proinflammatory_log2fc_bgcorr_high_vs_other,-0.25325165413968564,-0.21630759391587717,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.12295919409815559,0.0388831112608905,0.15910093066432543,-0.4718583517742136,-0.10998676065569218,-0.34121136279038866,-0.16529194548898266
+zs_raw_s13,HC,proinflammatory_log2fc_high_vs_other,-1.048862578660911,-1.0209999549337219,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.250586534223766,0.07924241991148341,0.23441421864547463,-1.5948099853840718,-0.6484513690228095,-1.2281213864611362,-0.8696037708606856
+zs_raw_s13,HC,proinflammatory_c1q_high_minus_other,-0.03308816706575822,-0.03624145954076308,0.0,-1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.013586034369158303,0.00429628129758691,0.013841787307691422,-0.051685431667804704,-0.009267265026805915,-0.042807030576490414,-0.023369303555026026
+zs_raw_s13,HC,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.0645566089817994,0.08332611217925787,0.8,0.6,0.232421875,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.16104933798636148,0.05092827236991777,0.07509949651570691,-0.23155621448019786,0.3793967178393093,-0.050651147148747994,0.17976436511234678
+zs_raw_s13,HC,phagocytosis_antigen_log2fc_high_vs_other,-0.734918478498057,-0.7126266301008445,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.1992274426518669,0.06300124911904756,0.21156153450995596,-1.0666333915356605,-0.42719429345699383,-0.8774372054579446,-0.5923997515381695
+zs_raw_s13,HC,phagocytosis_antigen_c1q_high_minus_other,0.0821471041166985,0.0884403026395934,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.027218671020144813,0.008607299530647641,0.043055919865559567,0.0420366818778547,0.12449260917232174,0.06267603983109431,0.10161816840230269
+zs_raw_s13,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.0384686030209267,1.0004022158413353,1.0,1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.41676547935177666,0.13179281648834892,0.5064920121299641,0.22755662475714952,1.6523027354988524,0.7403325391964588,1.3366046668453946
+zs_raw_s13,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.39752222034163565,0.4219140855388522,0.9,0.8,0.048828125,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.5775249302961247,0.18262941852657355,0.6457158212125148,-0.9163750714038746,1.0512678532753368,-0.015614226915923901,0.8106586675991951
+zs_raw_s13,HC,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.6191243355674426,0.5969445374203749,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.09687444973760496,0.03063439082463327,0.16053394555082923,0.5016801996946074,0.762868193108502,0.5498245289355389,0.6884241421993463

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/zs_raw_s13/rule_A/sample.csv

@@ -0,0 +1,20 @@
+cohort,sample_id,group,source,n_monocytes,n_c1q_high,c1q_high_fraction,ifng_response_mean_c1q_high,ifng_response_mean_other,ifng_response_c1q_high_minus_other,proinflammatory_mean_c1q_high,proinflammatory_mean_other,proinflammatory_c1q_high_minus_other,phagocytosis_antigen_mean_c1q_high,phagocytosis_antigen_mean_other,phagocytosis_antigen_c1q_high_minus_other,ifng_response_log2fc_bgcorr_high_vs_other,proinflammatory_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,ifng_response_log2fc_high_vs_other,proinflammatory_log2fc_high_vs_other,phagocytosis_antigen_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_mean_c1q_high,phagocytosis_antigen_mhcii_fcgr_mean_other,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,background_log2fc_all_genes
+zs_raw_s13,BDU1,BD,generated,1331,25,0.018782870022539443,0.3537329044063119,0.30966815989220076,0.04406474451411113,0.2557727659853122,0.29908814141569234,-0.043315375430380165,0.7043842581961569,0.5915691445274928,0.11281511366866415,0.24635062395287552,-0.26981280054744733,0.044267506174554605,1.7130560216233202,-1.0342222643153967,-1.2081026715454206,-0.9603196659576819,0.6398332611678268,1.8237499330863942,0.9954056184225437,0.8283443146638505,-0.768799506962133
+zs_raw_s13,BDU2,BD,generated,987,21,0.02127659574468085,0.3293638108171038,0.2944637738447798,0.03490003697232402,0.2500634064749916,0.2761633957633262,-0.026099989288334624,0.7158296867664822,0.5891871989606724,0.12664248780580978,-0.23513683269684113,-0.2196013223012825,0.32235368601281955,1.2708669418606355,-1.6306973990537643,-1.295387210102764,-0.736147027867401,0.22396444204196375,1.7392256195744098,0.9735679503318446,0.7656576692425652,-0.8056237781410535
+zs_raw_s13,BDU3,BD,generated,1618,29,0.01792336217552534,0.42758748771219535,0.36209476615588315,0.0654927215563122,0.2954738358164612,0.31703145887829165,-0.021557623061830455,0.696180168476053,0.5990254686941703,0.09715469978188274,0.14544742595631494,-0.09637380428604096,-0.028912354666950968,0.9272537391137844,-0.8023822593227913,-0.9116340794682479,-0.8121320061546712,0.23389189998633358,1.7023377250371097,1.009998249399461,0.6923394756376486,-0.6277622343979401
+zs_raw_s13,BDV1,BD,generated,1885,37,0.019628647214854113,0.40112561446011824,0.3145843134520074,0.08654130100811086,0.2644308320471863,0.2887787918650133,-0.024347959817827003,0.6487229344280053,0.5339898890843715,0.11473304534363382,0.20025463057555076,-0.45191912940532575,-0.07511329118119697,1.7847092666998816,-0.7389729164073425,-1.2206582289287247,-0.8704380221365557,1.0442656421150305,1.6624533911880806,0.8274250235542011,0.8350283676338794,-0.611582659450093
+zs_raw_s13,BDV2,BD,generated,1907,53,0.02779234399580493,0.35314724265280417,0.3265541770364149,0.026593065616389244,0.2592493910022736,0.28893385930261856,-0.029684468300344935,0.7019964148568847,0.5779833640411662,0.12401305081571845,-0.3344602493890193,-0.3324889043846035,0.039837582252410554,1.510093931133912,-1.153094627225125,-1.00856971201494,-0.6436438861843002,0.9042018088114461,1.7800398280535785,1.007976014136607,0.7720638139169715,-0.5501501752711672
+zs_raw_s13,BDV3,BD,generated,1328,32,0.024096385542168676,0.373883154449993,0.31762165193079506,0.056261502519197926,0.25197427778690223,0.2917259138200583,-0.03975163603315607,0.6808250984289406,0.6169998494055743,0.06382524902336628,0.2833004185711508,-0.13492831357506577,0.10207115060214782,0.8806554332504846,-0.8847103153001608,-1.0282602333953796,-0.8962484630030396,-0.08237988303861954,1.6196219513583718,1.005137083298052,0.6144848680603199,-0.7321658548151927
+zs_raw_s13,BDV4,BD,generated,1150,32,0.02782608695652174,0.38877595242623897,0.3137237443809509,0.07505220804528806,0.2564575910496639,0.28430133426024623,-0.027843743210582306,0.7034040781545625,0.6119085390224156,0.09149553913214692,0.37983575683467935,0.029011585282643085,0.21764626965881084,1.7508057121805536,-0.8448731188966285,-0.8259063771301124,-0.7715599854471356,0.8227031848661969,1.7636059820485035,1.0294067426018447,0.7341992394466588,-0.7182890344297099
+zs_raw_s13,BDV5,BD,generated,2200,28,0.012727272727272728,0.4020727076362588,0.30976710493801823,0.09230560269824056,0.2812713881122701,0.30942685726446856,-0.028155469152198465,0.6756787500244646,0.522638725268401,0.1530400247560636,0.09811812968151269,-0.2977754816108371,0.24385991824948658,1.7656733380278897,-0.9646728797772631,-1.1495565988292398,-0.5722825318692208,0.9162280241249309,1.6711257307299319,0.7780070440471826,0.8931186866827493,-0.6487179157190677
+zs_raw_s13,BDV6,BD,generated,2219,46,0.020730058584948176,0.44819992428378536,0.38171390511640174,0.06648601916738361,0.3067176386230534,0.342495522493756,-0.035777883870702576,0.737875633458399,0.6334136358974627,0.10446199756093633,0.16300247196399198,-0.32822578212267245,0.27354446150101547,1.6533768100236192,-0.6558924548457897,-1.0899737310095687,-0.4598280530051235,1.0833933689896256,1.81994683907625,1.0860565604381156,0.7338902786381345,-0.5905174808914835
+zs_raw_s13,HC1,HC,generated,1530,40,0.026143790849673203,0.4119746461828074,0.37879283754983245,0.03318180863297493,0.2846619032208849,0.33331080259574986,-0.04864889937486494,0.7336770419161445,0.679460640297821,0.05421640161832342,0.03039332920623165,-0.4718583517742136,-0.23155621448019786,0.6842465702430839,-0.6310404167605262,-1.036488709896008,-0.8079542474619203,0.2757340413591405,1.7900345479267332,1.2601088073652504,0.5299257405614828,-0.4949831726884222
+zs_raw_s13,HC10,HC,generated,1139,26,0.0228270412642669,0.5007948441129272,0.415343144378841,0.08545169973408617,0.3104700765927589,0.34561541658598033,-0.03514533999322145,0.765806549558241,0.7142954453661328,0.05151110419210825,0.1334713051190291,-0.2222865571738223,0.026823959775330808,1.3531325674422954,-0.8304492664210466,-1.098167568082675,-0.7704013123456203,0.7216021873403472,1.8920781225819505,1.28200886054836,0.6100692620335906,-0.6858582869384227
+zs_raw_s13,HC2,HC,generated,1120,20,0.017857142857142856,0.47339219100638613,0.36488358890938116,0.10850860209700497,0.2931613363480491,0.33326230358268805,-0.04010096723463896,0.7900500156398139,0.6655574064674922,0.12449260917232174,0.5377612766560578,-0.16297605164376275,0.3793967178393093,1.6523027354988524,-0.7908058817791533,-1.1551608400144635,-0.6132945956628358,0.874279330513832,1.9188965935844133,1.171451591802329,0.7474450017820844,-0.7932290776478611
+zs_raw_s13,HC3,HC,generated,779,23,0.029525032092426188,0.3893923217998546,0.36779490550280264,0.021597416297051975,0.2567425717488222,0.3084280034166269,-0.051685431667804704,0.7247442085074967,0.682707526629642,0.0420366818778547,-0.4024052201459375,-0.36436027728376386,-0.10395653145247334,0.8746103465551747,-1.5498912666537559,-1.2116186511908815,-0.9987970659432612,0.06570855511438907,1.772342745311227,1.2706625456166196,0.5016801996946074,-0.7450942200926276
+zs_raw_s13,HC4,HC,generated,1561,56,0.03587443946188341,0.4778554920563503,0.39121118929491006,0.08664430276144025,0.28672505210596394,0.32406263119426865,-0.037337579088304707,0.7655785457926311,0.6871443575808,0.07843418821183112,0.14921424143302345,-0.10998676065569218,0.08997823049955599,1.3834195220513066,-0.4163339150273861,-0.6484513690228095,-0.42719429345699383,1.0512678532753368,1.9445611769681947,1.2284785001042966,0.7160826768638981,-0.4384156281082829
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paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/zs_raw_s13/rule_B/group.csv

@@ -0,0 +1,25 @@
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paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/zs_raw_s13/rule_B/sample.csv

@@ -0,0 +1,20 @@
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