Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/zs_raw_s04/rule_C/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+zs_raw_s04,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.21564243336462613,0.17543886507175813,0.8888888888888888,0.7777777777777778,0.01171875,9,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.18436935936322796,0.061456453121075984,0.32755027281849297,-0.0353160223270514,0.4630952189381805,0.07392359833244394,0.3573612683968083
+zs_raw_s04,BD,ifng_response_log2fc_high_vs_other,-2.3169841501432598,-2.3321291047979305,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.4518450464920485,0.15061501549734949,0.347010651889367,-3.107422180506174,-1.735533125630226,-2.6643029987039872,-1.9696653015825323
+zs_raw_s04,BD,ifng_response_c1q_high_minus_other,0.0888940511789932,0.076321660546041,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.06059193422467103,0.020197311408223676,0.03522010429073685,0.030050909194976494,0.2390610150610487,0.04231896755162313,0.13546913480636327
+zs_raw_s04,BD,proinflammatory_log2fc_bgcorr_high_vs_other,-0.22239946491193915,-0.20375267416110476,0.2222222222222222,-0.5555555555555556,0.01953125,9,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.2128510746053229,0.0709503582017743,0.13984982363825182,-0.5573855758612863,0.046471138150692905,-0.3860112843194475,-0.05878764550443083
+zs_raw_s04,BD,proinflammatory_log2fc_high_vs_other,-1.9778611444821865,-1.9356623116025917,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.4049711792165642,0.13499039307218808,0.5268131818159325,-2.7442648135719,-1.4118179005764675,-2.2891495491194878,-1.666572739844885
+zs_raw_s04,BD,proinflammatory_c1q_high_minus_other,0.003329421491853119,-0.00846581056718454,0.3333333333333333,-0.3333333333333333,0.734375,9,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.055438198872237894,0.0184793996240793,0.03536353018051436,-0.06814125001546861,0.12743000263950316,-0.03928415045736405,0.04594299344107029
+zs_raw_s04,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.23223930427532188,0.28986501110392887,0.6666666666666666,0.3333333333333333,0.07421875,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.29405680277206847,0.09801893425735615,0.45400494624702986,-0.23164057347510703,0.6526582549043745,0.006207236549553324,0.45827137200109047
+zs_raw_s04,BD,phagocytosis_antigen_log2fc_high_vs_other,-1.8203472960953364,-1.6078389948059975,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.5482904246960539,0.18276347489868464,0.6607920192311285,-2.8674847152724188,-1.1422019881266954,-2.241800624975986,-1.398893967214687
+zs_raw_s04,BD,phagocytosis_antigen_c1q_high_minus_other,0.14428971757875597,0.15189922861111893,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.05602495074752092,0.018674983582506972,0.08437294999137868,0.0755577061856999,0.2281651781664097,0.10122512821262498,0.18735430694488697
+zs_raw_s04,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.193990414220998,1.3220535984260513,0.7777777777777778,0.5555555555555556,0.01953125,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.9574831085561544,0.31916103618538477,1.220111304324245,-0.5383078748811865,2.2143302721236724,0.45800374498145435,1.9299770834605416
+zs_raw_s04,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,-1.0075441643345697,-0.8924233009651166,0.2222222222222222,-0.5555555555555556,0.01953125,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,1.2331128808038223,0.41103762693460744,0.8617056917042785,-3.566193111749515,0.1634040645968565,-1.9553986317702816,-0.059689696898857725
+zs_raw_s04,BD,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.7750884324281493,0.8358933571151637,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.2011169228460959,0.06703897428203197,0.3907592420469814,0.4752346723295324,0.9970493555695408,0.6204962805139378,0.9296805843423608
+zs_raw_s04,HC,ifng_response_log2fc_bgcorr_high_vs_other,0.1474520541105644,0.2131015682631841,0.8,0.6,0.16015625,10,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.231962820439077,0.07335308450641423,0.17848883978564264,-0.3224524017190954,0.37514096132031133,-0.01848415141896259,0.31338825964009137
+zs_raw_s04,HC,ifng_response_log2fc_high_vs_other,-2.103044696163524,-1.999574847140447,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.6917167531169608,0.2187400435545971,0.19346480027719615,-3.4258429648644255,-1.1408922242781092,-2.597869052481347,-1.6082203398457007
+zs_raw_s04,HC,ifng_response_c1q_high_minus_other,0.07665137461782694,0.07526916265506739,0.9,0.8,0.00390625,10,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.05931492063855586,0.018757024844996553,0.09549654603235916,-0.003699466140431318,0.1794350239500861,0.034220036511934095,0.11908271272371979
+zs_raw_s04,HC,proinflammatory_log2fc_bgcorr_high_vs_other,-0.358395264599172,-0.47041814928974335,0.1,-0.8,0.005859375,10,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.2675711359670075,0.08461342257743437,0.4493850823180902,-0.6506538392074811,0.016794593069231954,-0.5498041245515866,-0.16698640464675746
+zs_raw_s04,HC,proinflammatory_log2fc_high_vs_other,-1.9392802555433328,-1.9076439665009637,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.5375453549987087,0.16998676674396973,0.41337033546828206,-2.9193164607935795,-1.0947550921721783,-2.323817037514112,-1.554743473572554
+zs_raw_s04,HC,proinflammatory_c1q_high_minus_other,-0.029238197103538623,-0.03429120698954824,0.2,-0.6,0.02734375,10,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.03855366360418528,0.012191738913316182,0.0377035337414319,-0.08727106656353145,0.032970245340544546,-0.05681782661326243,-0.00165856759381482
+zs_raw_s04,HC,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.07616652374967374,0.12635119172251746,0.6,0.2,0.375,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.23661419097987346,0.07482397702144683,0.3310123016749359,-0.3119726186364477,0.38219385203300593,-0.0930970718184405,0.24543011931778796
+zs_raw_s04,HC,phagocytosis_antigen_log2fc_high_vs_other,-1.7096495676443844,-1.626269717539596,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.5181333766110916,0.16384816018448645,0.5532915357129409,-2.6483967498222833,-0.9177251371307062,-2.080299856817028,-1.3389992784717406
+zs_raw_s04,HC,phagocytosis_antigen_c1q_high_minus_other,0.07876854817280303,0.07868605380885196,0.9,0.8,0.00390625,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.06780500928474631,0.02144182661086628,0.09328189062738645,-0.005778513020809339,0.21520046560231398,0.03026376652155472,0.12727332982405135
+zs_raw_s04,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,0.847871122874764,0.8932033815511031,1.0,1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.5972474213814389,0.18886621782276947,1.0792369917911029,0.008119376402391531,1.6155050287916755,0.42062605541638004,1.2751161903331478
+zs_raw_s04,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,-0.8300300208554383,-1.0979625108407367,0.1,-0.8,0.013671875,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.9067681194690516,0.28674525671498735,1.1267169706215054,-2.127593865685566,0.8515214278298662,-1.4786928572316569,-0.18136718447921962
+zs_raw_s04,HC,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.5511766395367671,0.501228381559678,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.17858711453389678,0.05647420426844734,0.30383841825519814,0.3315630847349331,0.8554013275817525,0.42342311383757003,0.6789301652359642

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/zs_raw_s04/rule_C/sample.csv

@@ -0,0 +1,20 @@
+cohort,sample_id,group,source,n_monocytes,n_c1q_high,c1q_high_fraction,ifng_response_mean_c1q_high,ifng_response_mean_other,ifng_response_c1q_high_minus_other,proinflammatory_mean_c1q_high,proinflammatory_mean_other,proinflammatory_c1q_high_minus_other,phagocytosis_antigen_mean_c1q_high,phagocytosis_antigen_mean_other,phagocytosis_antigen_c1q_high_minus_other,ifng_response_log2fc_bgcorr_high_vs_other,proinflammatory_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,ifng_response_log2fc_high_vs_other,proinflammatory_log2fc_high_vs_other,phagocytosis_antigen_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_mean_c1q_high,phagocytosis_antigen_mhcii_fcgr_mean_other,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,background_log2fc_all_genes
+zs_raw_s04,BDU1,BD,generated,1310,2,0.0015267175572519084,0.5522806051671602,0.31321959010611145,0.2390610150610487,0.4249639462562982,0.297533943616795,0.12743000263950316,0.7461288190410823,0.5942295904299634,0.15189922861111893,0.3557766061320331,0.03805180616584947,-0.23164057347510703,-0.5383078748811865,-2.819103070909115,-2.1173287596035326,-2.8674847152724188,-3.566193111749515,1.5815867179958252,1.0175595447136658,0.5640271732821593,-1.6863231794532452
+zs_raw_s04,BDU2,BD,generated,997,7,0.007021063189568706,0.3678490435232032,0.2915273829771622,0.076321660546041,0.24281620427318246,0.27286185070139024,-0.030045646428207784,0.6736100837332044,0.5908352286797566,0.08277485505344784,0.4630952189381805,-0.20375267416110476,0.16606258617196792,1.3204914312079892,-2.2472579836978404,-1.9356623116025917,-1.9679063738926033,-1.060781832419571,1.6699115343894102,0.9850975462017808,0.6848139881876294,-1.414340487844978
+zs_raw_s04,BDU3,BD,generated,1619,10,0.006176652254478073,0.449032883223353,0.3608342898390939,0.08819859338425912,0.3609468695106502,0.31797675279897414,0.042970116711676054,0.7667745146864092,0.5997830700897407,0.16699144459666848,0.013922244586658701,-0.19299960384462533,0.28986501110392887,1.3220535984260513,-1.7418325018664451,-1.5821608212225737,-1.1422019881266954,-0.19907614071529253,1.8506459774974586,1.014752620382295,0.8358933571151637,-1.0596450274508136
+zs_raw_s04,BDV1,BD,generated,1909,8,0.0041906757464641176,0.4024553970946353,0.312529753051335,0.08992564404330028,0.2962160909057004,0.2855431673092643,0.010672923596436068,0.745259775859941,0.534231493146193,0.21102828271374796,0.043061453250283946,-0.21051949734950798,0.47478610898367574,1.9982240973282013,-2.058612702646349,-1.694170742181637,-1.2689945510192433,0.1634040645968565,1.6851962762731014,0.8384797839478499,0.8467164923252515,-1.1688826281402709
+zs_raw_s04,BDV2,BD,generated,1904,4,0.0021008403361344537,0.3552143099701015,0.325163400775125,0.030050909194976494,0.21855337009548875,0.28669462011095737,-0.06814125001546861,0.7531060829208763,0.578971239616715,0.1741348433041613,0.16658396960866567,-0.5573855758612863,0.4528047619120406,1.8283619965886604,-3.107422180506174,-2.7442648135719,-2.1620315583639487,-0.8924233009651166,2.0150787853176118,1.018029429748071,0.9970493555695408,-1.7423627760758489
+zs_raw_s04,BDV3,BD,generated,1331,10,0.007513148009015778,0.37171458302036076,0.31700904326779733,0.054705539752563426,0.26349706974042303,0.2881876763245013,-0.02469060658407829,0.6903518985683845,0.6147941923826846,0.0755577061856999,0.38760783895232964,0.046471138150692905,-0.001200184334989276,0.6937774135422683,-1.735533125630226,-1.4118179005764675,-1.590772792467096,-0.9406804366136388,1.4794274731215655,1.004192800792033,0.4752346723295324,-1.2151407699423733
+zs_raw_s04,BDV4,BD,generated,1173,6,0.005115089514066497,0.38016639093796206,0.31375861957299644,0.06640777136496562,0.27848941725550364,0.28264582161800705,-0.004156404362503419,0.7022149259822207,0.6124530326694381,0.08976189331278261,0.17543886507175813,-0.12363531365170438,-0.09571948507963908,-0.006905924213185529,-2.405623354535716,-1.8506814974945696,-2.274655151777206,-2.370679446121467,1.6438559506509938,1.0480030316093245,0.5958529190416693,-1.4121620891736488
+zs_raw_s04,BDV5,BD,generated,2186,5,0.0022872827081427266,0.4132560408569496,0.3103378267372247,0.1029182141197249,0.2999051787108636,0.3083709892780481,-0.00846581056718454,0.7509426279681571,0.5227774498017475,0.2281651781664097,0.3706117260687769,-0.2634851372899562,0.6526582549043745,2.2143302721236724,-2.4053433266995445,-2.2209839239975695,-1.6078389948059975,-0.28755975739016315,1.7707694207019262,0.7841572596132755,0.9866121610886507,-1.4518078512862584
+zs_raw_s04,BDV6,BD,generated,2197,7,0.0031861629494765588,0.43488383738881814,0.3824267242447589,0.052457113144059264,0.32517498251659277,0.34078351408008734,-0.015608531563494565,0.7570236841576989,0.6387296578929318,0.11829402626476715,-0.0353160223270514,-0.5343403263658099,0.38253725829164476,1.9138887178665134,-2.3321291047979305,-2.243679530088838,-1.5012395391328202,0.08609248236678048,2.094686794103875,1.1050910211901281,0.9895957729137468,-1.3088607878765546
+zs_raw_s04,HC1,HC,generated,1527,13,0.008513425016371971,0.39552235253659673,0.3811252302246259,0.014397122311970822,0.29587004161926544,0.3312170076991819,-0.03534696607991644,0.7435034211430482,0.6841972649427263,0.05930615620032198,-0.3224524017190954,-0.6461327567568276,-0.3119726186364477,0.008119376402391531,-2.0871463968632114,-2.005405530309076,-1.7566221608687553,-1.272911486847913,1.6999607575839628,1.2693752676341543,0.4305854899498085,-1.0755158525953092
+zs_raw_s04,HC10,HC,generated,1132,7,0.006183745583038869,0.4886886371685991,0.41538872599904736,0.07329991116955176,0.3407793747083997,0.3448318534345291,-0.004052478726129405,0.8254825604478716,0.7111157317293924,0.11436682871847925,0.2820622473524626,-0.1318899656266594,0.32786737096738416,1.1234504284577607,-1.859527518538399,-1.6156617754920386,-1.2722649752117667,-0.16333961148526674,2.0048149182135733,1.2835293500203342,0.7212855681932391,-1.26917074156044
+zs_raw_s04,HC2,HC,generated,1120,3,0.0026785714285714286,0.420624037532718,0.36905661788745747,0.051567419645260515,0.24246945261597008,0.32974051917950153,-0.08727106656353145,0.6831415629871814,0.6684098160161117,0.014731746971069715,0.299312898582154,-0.6033987773584883,0.16685619568941581,0.9395301657252583,-3.0995488520263157,-2.9193164607935795,-2.6483967498222833,-2.127593865685566,1.8779886764357914,1.1856855875474208,0.6923030888883706,-1.7953914710622096
+zs_raw_s04,HC3,HC,generated,776,8,0.010309278350515464,0.4503964476958566,0.3731580335552736,0.07723841414058302,0.269307250442532,0.3077001976896009,-0.038392947247068876,0.6799589304628193,0.6857374434836286,-0.005778513020809339,0.12434190524304146,-0.4619195515937218,-0.22827382936325208,1.5102058449942726,-1.9984688325167597,-1.950879797184153,-1.9884427493946557,-0.198798508484771,1.684433814604625,1.2984532119032044,0.38598060270142054,-1.2214098253501322
+zs_raw_s04,HC4,HC,generated,1551,14,0.009026434558349452,0.507061875483498,0.3950369263730047,0.11202494911049332,0.29305393850498007,0.3254172953648989,-0.03236335685991881,0.8192811662956456,0.6900513742365428,0.1292297920591028,0.3211828842743058,0.016794593069231954,0.2220602915344408,1.6155050287916755,-1.1408922242781092,-1.0947550921721783,-0.9177251371307062,0.8515214278298662,2.1104575279006896,1.2550562003189372,0.8554013275817525,-0.9588607257647523
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paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/zs_raw_s04/rule_D/group.csv

@@ -0,0 +1,25 @@
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paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/zs_raw_s04/rule_D/sample.csv

@@ -0,0 +1,20 @@
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