Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/0cf1296c4bbbbe64/donor_deg_summary.csv

@@ -0,0 +1,26 @@
+arm,celltype,status,observed_status,generated_status,n_case_donors_observed,n_control_donors_observed,n_case_donors_generated,n_control_donors_generated,method_observed,method_generated,reason_observed,reason_generated,reason_fit,reason_population,top50_overlap_count,observed_top50_size,generated_top50_size
+lora,T cell,ok,ok,ok,32,32,32,32,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,10,50,50
+lora,B cell,ok,ok,ok,32,32,32,32,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,0,50,50
+lora,Monocyte,ok,ok,ok,32,32,32,32,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,13,50,50
+lora,NK cell,ok,ok,ok,32,32,32,32,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,6,50,50
+lora,DC,ok,ok,ok,32,32,31,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,10,50,50
+pairedcal,T cell,ok,ok,ok,32,32,32,32,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,9,50,50
+pairedcal,B cell,ok,ok,ok,32,32,32,32,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,0,50,50
+pairedcal,Monocyte,ok,ok,ok,32,32,32,32,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,10,50,50
+pairedcal,NK cell,ok,ok,ok,32,32,32,32,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,9,50,50
+pairedcal,DC,ok,ok,ok,32,32,32,32,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,2,50,50
+scsemi,T cell,ok,ok,ok,32,32,32,32,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,5,50,50
+scsemi,B cell,ok,ok,ok,32,32,32,32,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,0,50,50
+scsemi,Monocyte,ok,ok,ok,32,32,32,32,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,9,50,50
+scsemi,NK cell,ok,ok,ok,32,32,32,32,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,2,50,50
+scsemi,DC,ok,ok,ok,32,32,32,32,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,4,50,50
+raw,T cell,ok,ok,ok,32,32,32,32,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,11,50,50
+raw,B cell,ok,ok,ok,32,32,32,32,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,0,50,50
+raw,Monocyte,ok,ok,ok,32,32,32,32,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,13,50,50
+raw,NK cell,ok,ok,ok,32,32,32,32,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,11,50,50
+raw,DC,ok,ok,ok,32,32,32,32,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,9,50,50
+refcal,T cell,ok,ok,ok,32,32,32,32,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,7,50,50
+refcal,B cell,ok,ok,ok,32,32,32,32,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,0,50,50
+refcal,Monocyte,ok,ok,ok,32,32,32,32,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,7,50,50
+refcal,NK cell,ok,ok,ok,32,32,32,32,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,5,50,50
+refcal,DC,ok,ok,ok,32,32,32,32,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,2,50,50

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/1e52671f4ae15b5b/donor_bootstrap_2000.csv

@@ -0,0 +1,113 @@
+arm,baseline,estimate,ci_low,ci_high,n_donors,n_paired_samples,n_excluded_nonfinite_pairs,n_boot,seed,bootstrap_unit,metric,status
+pairedcal,lora,0.006343413500953011,-0.048713917910175215,0.05756969385714243,52,145,0,2000,20261012,donor_all_draws_and_visits,comp_l1,ok
+raw,lora,0.36299703863633975,0.26781116482623574,0.4494642795648149,52,145,0,2000,20261012,donor_all_draws_and_visits,comp_l1,ok
+refcal,lora,0.019372447784423263,-0.03215605639037475,0.07355515730088023,52,145,0,2000,20261012,donor_all_draws_and_visits,comp_l1,ok
+scsemi,lora,-0.0005694388032909672,-0.06897609647393145,0.060173518242204405,52,145,0,2000,20261012,donor_all_draws_and_visits,comp_l1,ok
+pairedcal,lora,0.0,0.0,0.0,52,145,0,2000,20261012,donor_all_draws_and_visits,comp_l1_obs_loo_null,ok
+raw,lora,0.0,0.0,0.0,52,145,0,2000,20261012,donor_all_draws_and_visits,comp_l1_obs_loo_null,ok
+refcal,lora,0.0,0.0,0.0,52,145,0,2000,20261012,donor_all_draws_and_visits,comp_l1_obs_loo_null,ok
+scsemi,lora,0.0,0.0,0.0,52,145,0,2000,20261012,donor_all_draws_and_visits,comp_l1_obs_loo_null,ok
+pairedcal,lora,-0.05570023876173351,-0.09340271217724368,-0.018727388584915763,52,145,0,2000,20261012,donor_all_draws_and_visits,coverage,ok
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+refcal,lora,-0.35844852230573426,-0.3952257202682957,-0.32077368420431857,52,145,0,2000,20261012,donor_all_draws_and_visits,coverage,ok
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+pairedcal,lora,-0.17323467074108986,-0.20806723549312045,-0.13744811446235672,52,145,0,2000,20261012,donor_all_draws_and_visits,coverage_depth_matched,ok
+raw,lora,-0.7425067681217075,-0.775834979683564,-0.7076353145778754,52,145,0,2000,20261012,donor_all_draws_and_visits,coverage_depth_matched,ok
+refcal,lora,-0.3814423311815116,-0.42766086379893725,-0.3358120917378445,52,145,0,2000,20261012,donor_all_draws_and_visits,coverage_depth_matched,ok
+scsemi,lora,-0.7197411855759024,-0.7489700319626643,-0.6883081988408594,52,145,0,2000,20261012,donor_all_draws_and_visits,coverage_depth_matched,ok
+pairedcal,lora,-0.005779059829059826,-0.011344922542735041,-0.00046006944444444285,52,145,0,2000,20261012,donor_all_draws_and_visits,gen_B cell,ok
+raw,lora,-0.004387606837606837,-0.012639097222222222,0.0031221688034188113,52,145,0,2000,20261012,donor_all_draws_and_visits,gen_B cell,ok
+refcal,lora,0.005184081196581195,-0.0009407104700854646,0.011105806623931612,52,145,0,2000,20261012,donor_all_draws_and_visits,gen_B cell,ok
+scsemi,lora,-0.007067841880341884,-0.01937204326923077,0.0047109909188034135,52,145,0,2000,20261012,donor_all_draws_and_visits,gen_B cell,ok
+pairedcal,lora,-0.01583675213675213,-0.018975304487179493,-0.01273531249999999,52,145,0,2000,20261012,donor_all_draws_and_visits,gen_DC,ok
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+refcal,lora,-0.00938952991452991,-0.0128398798076923,-0.006082061965811956,52,145,0,2000,20261012,donor_all_draws_and_visits,gen_DC,ok
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+pairedcal,lora,-0.008104380341880348,-0.028156290064102574,0.012000106837606833,52,145,0,2000,20261012,donor_all_draws_and_visits,gen_Monocyte,ok
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+refcal,lora,0.08367873931623931,0.06127555555555556,0.10589514423076925,52,145,0,2000,20261012,donor_all_draws_and_visits,gen_Monocyte,ok
+scsemi,lora,-0.046793162393162405,-0.08245683493589745,-0.01639108173076925,52,145,0,2000,20261012,donor_all_draws_and_visits,gen_Monocyte,ok
+pairedcal,lora,-0.0563190170940171,-0.07158272435897435,-0.04150745726495727,52,145,0,2000,20261012,donor_all_draws_and_visits,gen_NK cell,ok
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+pairedcal,lora,0.005668910256410262,0.0043734481837606875,0.0072288595085470125,52,145,0,2000,20261012,donor_all_draws_and_visits,gen_Other,ok
+raw,lora,0.008994017094017094,0.007070080128205127,0.0110906704059829,52,145,0,2000,20261012,donor_all_draws_and_visits,gen_Other,ok
+refcal,lora,0.02025982905982906,0.01577411324786325,0.026672593482905974,52,145,0,2000,20261012,donor_all_draws_and_visits,gen_Other,ok
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+pairedcal,lora,0.08037029914529913,0.053925998931623934,0.10888285256410253,52,145,0,2000,20261012,donor_all_draws_and_visits,gen_T cell,ok
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+pairedcal,lora,0.0,0.0,0.0,52,145,0,2000,20261012,donor_all_draws_and_visits,median_umi_obs,ok
+raw,lora,0.0,0.0,0.0,52,145,0,2000,20261012,donor_all_draws_and_visits,median_umi_obs,ok
+refcal,lora,0.0,0.0,0.0,52,145,0,2000,20261012,donor_all_draws_and_visits,median_umi_obs,ok
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+raw,lora,33.02854700854701,30.342939102564102,35.82746127136751,52,145,0,2000,20261012,donor_all_draws_and_visits,mono_pct_gen,ok
+refcal,lora,8.367873931623931,6.127555555555556,10.58951442307692,52,145,0,2000,20261012,donor_all_draws_and_visits,mono_pct_gen,ok
+scsemi,lora,-4.67931623931624,-8.245683493589743,-1.6391081730769237,52,145,0,2000,20261012,donor_all_draws_and_visits,mono_pct_gen,ok
+pairedcal,lora,0.0,0.0,0.0,52,145,0,2000,20261012,donor_all_draws_and_visits,mono_pct_obs,ok
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+pairedcal,lora,0.0,0.0,0.0,52,145,0,2000,20261012,donor_all_draws_and_visits,n_reference_cells,ok
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/367626cb45691be7/support.json

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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/815747473f451dd6/summary.json

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