Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/queues/imperial_eskd_draw0.txt.full

@@ -0,0 +1,12 @@
+# imperial_eskd draw 0: LoRA r16 at K = 4000 on the draw's 5 training donors, then paired-test parts (1,500 cells per sample) and bulk-only parts (4,000 cells per sample); base seed 20260927
+train|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/runs/imperial_eskd/draw0/lora_k4000|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/conditions_raw_fixed_K4000.npz|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/imperial_eskd/fewshot_n5/draw0/train_donors.txt
+sample|imperial_eskd_d0_paired_p0|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/paired_test/draw0_test_raw_K4000_part0.npz|20260927|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw0/paired_test_K4000_part0.npz|70500
+sample|imperial_eskd_d0_paired_p1|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/paired_test/draw0_test_raw_K4000_part1.npz|490261820|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw0/paired_test_K4000_part1.npz|72000
+sample|imperial_eskd_d0_paired_p2|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/paired_test/draw0_test_raw_K4000_part2.npz|970262732|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw0/paired_test_K4000_part2.npz|70500
+sample|imperial_eskd_d0_bulkonly_p0|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part0.npz|20260927|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw0/bulkonly_K4000_part0.npz|92000
+sample|imperial_eskd_d0_bulkonly_p1|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part1.npz|250261364|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw0/bulkonly_K4000_part1.npz|96000
+sample|imperial_eskd_d0_bulkonly_p2|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part2.npz|490261820|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw0/bulkonly_K4000_part2.npz|92000
+sample|imperial_eskd_d0_bulkonly_p3|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part3.npz|720262257|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw0/bulkonly_K4000_part3.npz|96000
+sample|imperial_eskd_d0_bulkonly_p4|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part4.npz|960262713|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw0/bulkonly_K4000_part4.npz|92000
+sample|imperial_eskd_d0_bulkonly_p5|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part5.npz|1190263150|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw0/bulkonly_K4000_part5.npz|96000
+sample|imperial_eskd_d0_bulkonly_p6|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part6.npz|1430263606|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw0/bulkonly_K4000_part6.npz|92000

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/queues/imperial_eskd_draw1.txt

@@ -0,0 +1,12 @@
+# imperial_eskd draw 1: LoRA r16 at K = 4000 on the draw's 5 training donors, then paired-test parts (1,500 cells per sample) and bulk-only parts (4,000 cells per sample); base seed 21260930
+train|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/runs/imperial_eskd/draw1/lora_k4000|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/conditions_raw_fixed_K4000.npz|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/imperial_eskd/fewshot_n5/draw1/train_donors.txt
+sample|imperial_eskd_d1_paired_p0|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/paired_test/draw1_test_raw_K4000_part0.npz|21260930|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw1/paired_test_K4000_part0.npz|72000
+sample|imperial_eskd_d1_paired_p1|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/paired_test/draw1_test_raw_K4000_part1.npz|501261842|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw1/paired_test_K4000_part1.npz|70500
+sample|imperial_eskd_d1_paired_p2|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/paired_test/draw1_test_raw_K4000_part2.npz|971262735|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw1/paired_test_K4000_part2.npz|72000
+sample|imperial_eskd_d1_bulkonly_p0|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part0.npz|21260930|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw1/bulkonly_K4000_part0.npz|92000
+sample|imperial_eskd_d1_bulkonly_p1|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part1.npz|251261367|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw1/bulkonly_K4000_part1.npz|96000
+sample|imperial_eskd_d1_bulkonly_p2|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part2.npz|491261823|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw1/bulkonly_K4000_part2.npz|92000
+sample|imperial_eskd_d1_bulkonly_p3|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part3.npz|721262260|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw1/bulkonly_K4000_part3.npz|96000
+sample|imperial_eskd_d1_bulkonly_p4|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part4.npz|961262716|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw1/bulkonly_K4000_part4.npz|92000
+sample|imperial_eskd_d1_bulkonly_p5|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part5.npz|1191263153|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw1/bulkonly_K4000_part5.npz|96000
+sample|imperial_eskd_d1_bulkonly_p6|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part6.npz|1431263609|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw1/bulkonly_K4000_part6.npz|92000

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/queues/imperial_eskd_draw1.txt.full

@@ -0,0 +1,12 @@
+# imperial_eskd draw 1: LoRA r16 at K = 4000 on the draw's 5 training donors, then paired-test parts (1,500 cells per sample) and bulk-only parts (4,000 cells per sample); base seed 21260930
+train|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/runs/imperial_eskd/draw1/lora_k4000|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/conditions_raw_fixed_K4000.npz|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/imperial_eskd/fewshot_n5/draw1/train_donors.txt
+sample|imperial_eskd_d1_paired_p0|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/paired_test/draw1_test_raw_K4000_part0.npz|21260930|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw1/paired_test_K4000_part0.npz|72000
+sample|imperial_eskd_d1_paired_p1|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/paired_test/draw1_test_raw_K4000_part1.npz|501261842|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw1/paired_test_K4000_part1.npz|70500
+sample|imperial_eskd_d1_paired_p2|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/paired_test/draw1_test_raw_K4000_part2.npz|971262735|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw1/paired_test_K4000_part2.npz|72000
+sample|imperial_eskd_d1_bulkonly_p0|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part0.npz|21260930|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw1/bulkonly_K4000_part0.npz|92000
+sample|imperial_eskd_d1_bulkonly_p1|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part1.npz|251261367|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw1/bulkonly_K4000_part1.npz|96000
+sample|imperial_eskd_d1_bulkonly_p2|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part2.npz|491261823|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw1/bulkonly_K4000_part2.npz|92000
+sample|imperial_eskd_d1_bulkonly_p3|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part3.npz|721262260|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw1/bulkonly_K4000_part3.npz|96000
+sample|imperial_eskd_d1_bulkonly_p4|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part4.npz|961262716|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw1/bulkonly_K4000_part4.npz|92000
+sample|imperial_eskd_d1_bulkonly_p5|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part5.npz|1191263153|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw1/bulkonly_K4000_part5.npz|96000
+sample|imperial_eskd_d1_bulkonly_p6|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part6.npz|1431263609|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw1/bulkonly_K4000_part6.npz|92000

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/queues/imperial_eskd_draw2.txt

@@ -0,0 +1,12 @@
+# imperial_eskd draw 2: LoRA r16 at K = 4000 on the draw's 5 training donors, then paired-test parts (1,500 cells per sample) and bulk-only parts (4,000 cells per sample); base seed 22260933
+train|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/runs/imperial_eskd/draw2/lora_k4000|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/conditions_raw_fixed_K4000.npz|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/imperial_eskd/fewshot_n5/draw2/train_donors.txt
+sample|imperial_eskd_d2_paired_p0|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/paired_test/draw2_test_raw_K4000_part0.npz|22260933|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw2/paired_test_K4000_part0.npz|70500
+sample|imperial_eskd_d2_paired_p1|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/paired_test/draw2_test_raw_K4000_part1.npz|492261826|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw2/paired_test_K4000_part1.npz|72000
+sample|imperial_eskd_d2_paired_p2|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/paired_test/draw2_test_raw_K4000_part2.npz|972262738|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw2/paired_test_K4000_part2.npz|70500
+sample|imperial_eskd_d2_bulkonly_p0|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part0.npz|22260933|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw2/bulkonly_K4000_part0.npz|92000
+sample|imperial_eskd_d2_bulkonly_p1|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part1.npz|252261370|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw2/bulkonly_K4000_part1.npz|96000
+sample|imperial_eskd_d2_bulkonly_p2|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part2.npz|492261826|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw2/bulkonly_K4000_part2.npz|92000
+sample|imperial_eskd_d2_bulkonly_p3|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part3.npz|722262263|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw2/bulkonly_K4000_part3.npz|96000
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