Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold1/n40/lora/scoring_support.json

@@ -0,0 +1,69 @@
+{
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+  "cohort": "immicro",
+  "unit": "fold1_n40",
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+    "HS12",
+    "HS16",
+    "HS17",
+    "HS21",
+    "HS35",
+    "HS36",
+    "HS39",
+    "HS44",
+    "HS46",
+    "HS47",
+    "HS48",
+    "HS51",
+    "HS56",
+    "HS57",
+    "HS65",
+    "HS68",
+    "HS72",
+    "HS84",
+    "HS92",
+    "HS96",
+    "HS109"
+  ],
+  "test_donor_ids": [
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+    "HS12",
+    "HS16",
+    "HS17",
+    "HS21",
+    "HS35",
+    "HS36",
+    "HS39",
+    "HS44",
+    "HS46",
+    "HS47",
+    "HS48",
+    "HS51",
+    "HS56",
+    "HS57",
+    "HS65",
+    "HS68",
+    "HS72",
+    "HS84",
+    "HS92",
+    "HS96",
+    "HS109"
+  ],
+  "arm_bindings": {
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+      "arm": "lora",
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+      "receipt_sha256": "4bf51543893e2127af73bb028b3e0407006058a462dede00aa34df585f14c0ae",
+      "source_binding": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold1/n40/lora/RUN.json",
+      "source_binding_sha256": "c79ee9490f0e78c1dd9db7b3899d2d07346d57afd1c4ff1df715e57b6a7c6cff",
+      "condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold1/n40/test_raw.npz",
+      "condition_sha256": "f64c30e0d9cd130f95402573ee1b53826b57447fb3d7e8de727481c86f243d9d",
+      "checkpoint_sha256": "e4877d6f68387128ce43a3d2de497754090c9b95d621f001c24a6e45e19062f8",
+      "support_sha256": "e4909b732024af62d8332b9fc37adb0f7bda2024884b74ac3b4059ecf371d2c5"
+    }
+  }
+}

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold4/n20/lora/receipts/score.json

@@ -0,0 +1,52 @@
+{
+  "state": "completed",
+  "stage": "score",
+  "at": "2026-10-15T11:43:36.267502+00:00",
+  "outputs": [
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold4/n20/lora/score/arms/lora/generated_cells.parquet",
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+      "bytes": 5112
+    },
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold4/n20/lora/score/arms/lora/labels/labels.parquet",
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+      "bytes": 784661
+    },
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold4/n20/lora/score/per_donor.csv",
+      "sha256": "af9dd98eb477ad90f8bd13fb4b6eec8f1bb1d0409225e0bc33b9ebc0012f1942",
+      "bytes": 8829
+    },
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold4/n20/lora/score/summary.json",
+      "sha256": "6722258650dc1db1586d009bcb1b0a86d019e2446bed1424e86146d32edd7e98",
+      "bytes": 7552
+    },
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold4/n20/lora/scoring_support.json",
+      "sha256": "8fddfb16569c7237a948820befdda8208fe4f30b717efb43572dd5c6732f4b3b",
+      "bytes": 2076
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+  ],
+  "support_sha256": "b070c6f6f9e0b95b4cb3951c76263c6a19981e0a8dbd635410ae99a94c2dd212",
+  "binding": {
+    "arm": "lora",
+    "npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold4/n20/lora.npz",
+    "npz_sha256": "b6c7a5505515cfe1e6d6301ba518cc390e8630a9a2c84343349b25285fc1b482",
+    "receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold4/n20/lora.log",
+    "receipt_sha256": "15077d63702559d518b285e3c87bc87b4032ef5e04251d4d43cd48146a62d13c",
+    "source_binding": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold4/n20/lora/RUN.json",
+    "source_binding_sha256": "ee1ccaf97f2c3aa267fa7fe0d51d052a8ee9a27bac78885da21fcb6f6ac26817",
+    "condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold4/n20/test_raw.npz",
+    "condition_sha256": "9e0a41119111a870b011b94fad6a53480b59eac0a709c61f0f314f74d8f201b8",
+    "checkpoint_sha256": "6113f120b7443054c5195687b3e05621af225948eadc45ead5144ff4b60919a2",
+    "support_sha256": "b070c6f6f9e0b95b4cb3951c76263c6a19981e0a8dbd635410ae99a94c2dd212"
+  },
+  "reuse": {}
+}

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold4/n20/lora/score/per_donor.csv

@@ -0,0 +1,22 @@
+arm,donor,group,n_generated_cells,n_observed_cells,n_reference_cells,gen_T cell,obs_T cell,gen_B cell,obs_B cell,gen_Monocyte,obs_Monocyte,gen_NK cell,obs_NK cell,gen_DC,obs_DC,gen_Other,obs_Other,comp_l1,comp_l1_obs_loo_null,pb_r,pb_own_rank,pb_top1,precision,coverage,precision_depth_matched,coverage_depth_matched,mono_pct_gen,mono_pct_obs,median_umi_gen,median_umi_obs
+lora,HS8,DB1,1500,3652,150,0.652,0.6251369112814896,0.076,0.06489594742606791,0.16066666666666668,0.15553121577217963,0.05733333333333333,0.11829134720700986,0.03933333333333333,0.028477546549835708,0.014666666666666666,0.007667031763417305,0.12191602774735304,0.12540728817026567,0.9092908199149727,3,False,1.0,1.0,0.9866666666666667,1.0,16.066666666666666,15.553121577217963,2583.5,1817.0
+lora,HS11,DB6,1500,2886,150,0.6693333333333333,0.6056826056826057,0.08133333333333333,0.061330561330561334,0.172,0.24358974358974358,0.04133333333333333,0.04054054054054054,0.026,0.04573804573804574,0.01,0.0031185031185031187,0.18265557865557866,0.2561903186031127,0.9037572704738657,13,False,0.9933333333333333,0.8466666666666667,1.0,0.9866666666666667,17.2,24.358974358974358,2735.0,2216.5
+lora,HS20,DB7,1500,1366,150,0.7733333333333333,0.7657393850658858,0.106,0.09882869692532943,0.06933333333333333,0.08345534407027819,0.023333333333333334,0.029282576866764276,0.020666666666666667,0.015373352855051245,0.007333333333333333,0.007320644216691069,0.040142508540751576,0.24496652935329646,0.8951599931132712,9,False,0.9933333333333333,0.86,0.9933333333333333,1.0,6.933333333333333,8.345534407027818,3008.5,2271.0
+lora,HS27,DB2,1500,4030,150,0.7233333333333334,0.6540942928039702,0.122,0.11464019851116625,0.08533333333333333,0.1196029776674938,0.046,0.0890818858560794,0.016,0.015632754342431762,0.007333333333333333,0.006947890818858561,0.1547030603804798,0.09660813635321817,0.9067883268919469,3,False,1.0,0.9866666666666667,1.0,1.0,8.533333333333333,11.96029776674938,2849.5,1575.5
+lora,HS28,DB5,1500,4446,150,0.618,0.594017094017094,0.12466666666666666,0.12010796221322537,0.16533333333333333,0.1545209176788124,0.05533333333333333,0.11156095366621682,0.03,0.015744489428699954,0.006666666666666667,0.004048582995951417,0.112455240665767,0.16876902964084625,0.9074136305488784,13,False,0.9933333333333333,0.7933333333333333,1.0,0.98,16.53333333333333,15.45209176788124,2691.5,1941.5
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+lora,HS45,DB7,1500,1980,150,0.66,0.6646464646464646,0.104,0.08333333333333333,0.16066666666666668,0.1191919191919192,0.04066666666666666,0.10606060606060606,0.025333333333333333,0.022727272727272728,0.009333333333333334,0.00404040404040404,0.14008080808080803,0.0677355126799284,0.90767220795067,11,False,0.9933333333333333,0.8133333333333334,0.9933333333333333,0.9933333333333333,16.066666666666666,11.91919191919192,2994.5,2373.5
+lora,HS54,DB3,1500,5391,150,0.8,0.7853830458171026,0.08866666666666667,0.06362455945093674,0.042666666666666665,0.0849564088295307,0.043333333333333335,0.037655351511778894,0.018,0.02485624188462252,0.007333333333333333,0.003524392506028566,0.09829196809497312,0.2552556292322815,0.9040425798038129,2,False,0.9933333333333333,0.9733333333333334,0.9933333333333333,1.0,4.266666666666667,8.49564088295307,3177.0,2188.0
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold4/n20/lora/score/summary.json

@@ -0,0 +1,211 @@
+{
+ "schema": "paired_ft_scores.v1",
+ "dataset": "immicro",
+ "written_utc": "2026-10-15T11:43:36.263827+00:00",
+ "command": [
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py",
+  "--dataset",
+  "immicro",
+  "--out",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold4/n20/lora/score",
+  "--donors",
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