Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/420f690bd5c6c3b8/manifest.json +153 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/6201ddd59f1d977a/ye2026_sepsis-disease-draw4.json +628 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/75df08985ecb9112/en.csv +25 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/c0490dbc181a0a33/support.json +83 -0
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/420f690bd5c6c3b8/manifest.json
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| 1 |
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{
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| 2 |
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"schema": "paired_ft_extra_metrics.v1",
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| 3 |
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"dataset": "ye2026_sepsis",
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| 4 |
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"design": "scored",
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| 5 |
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"unit": "strict",
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| 6 |
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"written_utc": "2026-10-12T17:23:16.008855+00:00",
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| 7 |
+
"command": [
|
| 8 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/tools/score_strict.py",
|
| 9 |
+
"--support-manifest",
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| 10 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw3/support.json",
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| 11 |
+
"--out",
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| 12 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw3",
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| 13 |
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"--action",
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| 14 |
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"all",
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| 15 |
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"--threads",
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| 16 |
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"4",
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"--arm",
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| 18 |
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"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw3/lora.npz",
|
| 19 |
+
"--arm",
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| 20 |
+
"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw3/pairedcal.npz",
|
| 21 |
+
"--arm",
|
| 22 |
+
"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw3/scsemi.npz",
|
| 23 |
+
"--arm",
|
| 24 |
+
"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/raw.npz",
|
| 25 |
+
"--arm",
|
| 26 |
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"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/refcal.npz"
|
| 27 |
+
],
|
| 28 |
+
"threads": 4,
|
| 29 |
+
"donors": [
|
| 30 |
+
"Abd-PS04",
|
| 31 |
+
"Abd-PS05",
|
| 32 |
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"Abd-PS07",
|
| 33 |
+
"Abd-PS19",
|
| 34 |
+
"Abd-PS20",
|
| 35 |
+
"Abd-PS23",
|
| 36 |
+
"Abd-PS27",
|
| 37 |
+
"Abd-S102",
|
| 38 |
+
"Abd-S103",
|
| 39 |
+
"Abd-S120",
|
| 40 |
+
"Abd-S123",
|
| 41 |
+
"Abd-S156",
|
| 42 |
+
"Abd-S39",
|
| 43 |
+
"Abd-S42",
|
| 44 |
+
"Abd-S47",
|
| 45 |
+
"Abd-S51",
|
| 46 |
+
"Abd-S54",
|
| 47 |
+
"Abd-S66",
|
| 48 |
+
"Abd-S79",
|
| 49 |
+
"Abd-S83",
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| 50 |
+
"Abd-S98",
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| 51 |
+
"HC01",
|
| 52 |
+
"HC05",
|
| 53 |
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"HC07",
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| 54 |
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"HC09",
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| 55 |
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"HC12",
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| 56 |
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"HC13",
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| 57 |
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"HC16",
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| 58 |
+
"IC10",
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| 59 |
+
"IC15",
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| 60 |
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"IC16",
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| 61 |
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"IC19",
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| 62 |
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"IC22",
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| 63 |
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"IC23",
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| 64 |
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"PHC01",
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| 65 |
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"PHC02",
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| 66 |
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"PHC03",
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| 67 |
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"PIC01",
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| 68 |
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"PIC02",
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| 69 |
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"PIC04",
|
| 70 |
+
"PIC05",
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| 71 |
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"Res-PS02",
|
| 72 |
+
"Res-PS03",
|
| 73 |
+
"Res-PS12",
|
| 74 |
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"Res-PS16",
|
| 75 |
+
"Res-PS21",
|
| 76 |
+
"Res-PS22",
|
| 77 |
+
"Res-PS25",
|
| 78 |
+
"Res-PS26",
|
| 79 |
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"Res-S10",
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| 80 |
+
"Res-S125",
|
| 81 |
+
"Res-S127",
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| 82 |
+
"Res-S136",
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| 83 |
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"Res-S146",
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| 84 |
+
"Res-S149",
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| 85 |
+
"Res-S150",
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| 86 |
+
"Res-S164",
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| 87 |
+
"Res-S166",
|
| 88 |
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"Res-S177",
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| 89 |
+
"Res-S184",
|
| 90 |
+
"Res-S19",
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| 91 |
+
"Res-S26",
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| 92 |
+
"Res-S40",
|
| 93 |
+
"Res-S77",
|
| 94 |
+
"Res-S87",
|
| 95 |
+
"Skin-S140",
|
| 96 |
+
"Skin-S152",
|
| 97 |
+
"Skin-S38",
|
| 98 |
+
"Skin-S43",
|
| 99 |
+
"Skin-S46",
|
| 100 |
+
"Skin-S52",
|
| 101 |
+
"Skin-S74",
|
| 102 |
+
"Uri-S134",
|
| 103 |
+
"Uri-S147",
|
| 104 |
+
"Uri-S157",
|
| 105 |
+
"Uri-S20",
|
| 106 |
+
"Uri-S93"
|
| 107 |
+
],
|
| 108 |
+
"n_samples": 77,
|
| 109 |
+
"calls": {
|
| 110 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw3/score": {
|
| 111 |
+
"arms": [
|
| 112 |
+
"lora",
|
| 113 |
+
"pairedcal",
|
| 114 |
+
"scsemi",
|
| 115 |
+
"raw",
|
| 116 |
+
"refcal"
|
| 117 |
+
],
|
| 118 |
+
"summary_sha256": "13c703fbb5995463861e38c95aed4d47ec9751b47704ec7be6a93d38c134a1d9"
|
| 119 |
+
}
|
| 120 |
+
},
|
| 121 |
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"reference_sha256": "bac12da8a241652cb75100a1b082b2be56806c9bf2fd20ce6f927f19683ea5b8",
|
| 122 |
+
"bandwidth_m": 27.639461251790532,
|
| 123 |
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"params": {
|
| 124 |
+
"seed": 20261001,
|
| 125 |
+
"ks": [
|
| 126 |
+
3,
|
| 127 |
+
5,
|
| 128 |
+
10
|
| 129 |
+
],
|
| 130 |
+
"knn_c2st_k": 5,
|
| 131 |
+
"rf_trees": 300,
|
| 132 |
+
"cv_folds": 5,
|
| 133 |
+
"bw_multiples": [
|
| 134 |
+
0.5,
|
| 135 |
+
1.0,
|
| 136 |
+
2.0
|
| 137 |
+
],
|
| 138 |
+
"bw_max_cells": 4000,
|
| 139 |
+
"en_pcs": 100,
|
| 140 |
+
"en_lb_max_queries_all_cells": 20000,
|
| 141 |
+
"en_all_cells": true
|
| 142 |
+
},
|
| 143 |
+
"n_representative_rows": null,
|
| 144 |
+
"fetched_from_server2": [],
|
| 145 |
+
"code_sha256": {
|
| 146 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/extra_metrics.py": "e76a6cd4c1c5ef7184e97755edcd0f48726b56ba251545a5b5a4b12bb766b0c2",
|
| 147 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/ft_common.py": "4a6366b0f22208cd58714fc0261b8840c643b9d4569704d560cfd93534cbc747",
|
| 148 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
|
| 149 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/umap/cell_immicro_5arm/tools/stage_b_embed.py": "d056cfdf38fb0e5f478756f370174e993b75d0c973c48e02e21749175a4ca2da"
|
| 150 |
+
},
|
| 151 |
+
"seconds": 1359.6,
|
| 152 |
+
"max_abs_diff_k10_pooled": 0.0
|
| 153 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/6201ddd59f1d977a/ye2026_sepsis-disease-draw4.json
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/75df08985ecb9112/en.csv
ADDED
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|
| 1 |
+
dataset,design,unit,set,cellset,distance,n_samples,n_cells_real,n_cells_gen,n_pcs,lb,ub,dif_mean,en,lb_exact,lb_queries,n_representative_rows,en_reps_at_lb,seconds
|
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| 13 |
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| 16 |
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| 17 |
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| 18 |
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| 19 |
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| 20 |
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| 21 |
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| 22 |
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|
| 23 |
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| 24 |
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| 25 |
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/c0490dbc181a0a33/support.json
ADDED
|
@@ -0,0 +1,83 @@
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| 1 |
+
{
|
| 2 |
+
"schema": "pbisc.paper.strict-support.v1",
|
| 3 |
+
"cohort": "immicro",
|
| 4 |
+
"design": "healthy_outerfold",
|
| 5 |
+
"unit": "fold1_n10",
|
| 6 |
+
"n_pairs": 10,
|
| 7 |
+
"train_sample_ids": [
|
| 8 |
+
"HS25",
|
| 9 |
+
"HS95",
|
| 10 |
+
"HS77",
|
| 11 |
+
"HS14",
|
| 12 |
+
"HS108",
|
| 13 |
+
"HS58",
|
| 14 |
+
"HS90",
|
| 15 |
+
"HS102",
|
| 16 |
+
"HS27",
|
| 17 |
+
"HS45"
|
| 18 |
+
],
|
| 19 |
+
"train_donor_ids": [
|
| 20 |
+
"HS25",
|
| 21 |
+
"HS95",
|
| 22 |
+
"HS77",
|
| 23 |
+
"HS14",
|
| 24 |
+
"HS108",
|
| 25 |
+
"HS58",
|
| 26 |
+
"HS90",
|
| 27 |
+
"HS102",
|
| 28 |
+
"HS27",
|
| 29 |
+
"HS45"
|
| 30 |
+
],
|
| 31 |
+
"test_sample_ids": [
|
| 32 |
+
"HS2",
|
| 33 |
+
"HS12",
|
| 34 |
+
"HS16",
|
| 35 |
+
"HS17",
|
| 36 |
+
"HS21",
|
| 37 |
+
"HS35",
|
| 38 |
+
"HS36",
|
| 39 |
+
"HS39",
|
| 40 |
+
"HS44",
|
| 41 |
+
"HS46",
|
| 42 |
+
"HS47",
|
| 43 |
+
"HS48",
|
| 44 |
+
"HS51",
|
| 45 |
+
"HS56",
|
| 46 |
+
"HS57",
|
| 47 |
+
"HS65",
|
| 48 |
+
"HS68",
|
| 49 |
+
"HS72",
|
| 50 |
+
"HS84",
|
| 51 |
+
"HS92",
|
| 52 |
+
"HS96",
|
| 53 |
+
"HS109"
|
| 54 |
+
],
|
| 55 |
+
"test_donor_ids": [
|
| 56 |
+
"HS2",
|
| 57 |
+
"HS12",
|
| 58 |
+
"HS16",
|
| 59 |
+
"HS17",
|
| 60 |
+
"HS21",
|
| 61 |
+
"HS35",
|
| 62 |
+
"HS36",
|
| 63 |
+
"HS39",
|
| 64 |
+
"HS44",
|
| 65 |
+
"HS46",
|
| 66 |
+
"HS47",
|
| 67 |
+
"HS48",
|
| 68 |
+
"HS51",
|
| 69 |
+
"HS56",
|
| 70 |
+
"HS57",
|
| 71 |
+
"HS65",
|
| 72 |
+
"HS68",
|
| 73 |
+
"HS72",
|
| 74 |
+
"HS84",
|
| 75 |
+
"HS92",
|
| 76 |
+
"HS96",
|
| 77 |
+
"HS109"
|
| 78 |
+
],
|
| 79 |
+
"excluded_sample_ids": [],
|
| 80 |
+
"seed": 20261013,
|
| 81 |
+
"selection_audit": [],
|
| 82 |
+
"sha256": "92447ba4a03867ba6b52a7739bf4db0eecf05fd367e725c0dbe07ae927b6f511"
|
| 83 |
+
}
|