Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/7ad4b45cb2c31909/immicro-healthy-fold0-n5-score.json +46 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/9369c8938cd5ab6c/summary.json +212 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/cdc350629149cd72/donor_bootstrap_2000.csv +113 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/ea523d50d5a7aa9e/status.json +18 -0
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/7ad4b45cb2c31909/immicro-healthy-fold0-n5-score.json
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{
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"state": "completed",
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"signature": "8a468255e3707a72a3e5f9af2c33d0b97deffb486c9e6caec9867aa124ac0bae",
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"outputs": [
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/immicro/healthy/fold0/n5/score/summary.json",
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"bytes": 23462,
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/immicro/healthy/fold0/n5/statistics/status.json",
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/immicro/healthy/fold0/n5/statistics/donor_bootstrap_2000.csv",
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/immicro/healthy/fold0/n5/extras/immicro/strict/manifest.json",
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"bytes": 3565,
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"mtime_ns": 1791808294621259761,
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/immicro/healthy/fold0/n5/contrast/immicro/strict/manifest.json",
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}
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],
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"seconds": 401.62207144801505,
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"at": "2026-10-12T12:31:35.344584+00:00",
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"validation_extension": {
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"at": "2026-10-12T12:55:13.220691+00:00",
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"previous_signature": "b13e46f90317e3f06fd6fb5c6fed206472c5cf498ba25c862342bf8e8b6fd770",
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"previous_code": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/backups/score_strict_before_legacy_adoption.py",
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"previous_code_sha256": "978bc354397a216318be17f0f0401087c280877be3727dee1bea993f1d0dd882",
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"current_code_sha256": "bf6f264bfd377a6d9831ee42c553e58a6bcf44d5a926667eb75454b58dd34c42",
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"change": "Added early validation branch exclusively for explicit legacy adoption schema; all five healthy arms use unchanged native branch. Scoring and statistic implementations are byte-identical. Existing output hashes reverified."
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}
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}
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/9369c8938cd5ab6c/summary.json
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| 1 |
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{
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| 2 |
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"schema": "paired_ft_scores.v1",
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| 3 |
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"dataset": "immicro",
|
| 4 |
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"written_utc": "2026-10-15T12:00:14.966876+00:00",
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| 5 |
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"command": [
|
| 6 |
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"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py",
|
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"--dataset",
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| 8 |
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"immicro",
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"--out",
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| 10 |
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"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/score",
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| 11 |
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"--donors",
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| 12 |
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"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n40/lora/test_sample_ids.txt",
|
| 13 |
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"--threads",
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| 14 |
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"2",
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| 15 |
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"--arm",
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| 16 |
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"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold0/n40/lora.npz",
|
| 17 |
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"--no-contrast",
|
| 18 |
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"--no-deg"
|
| 19 |
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],
|
| 20 |
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"arms": [
|
| 21 |
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"lora"
|
| 22 |
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],
|
| 23 |
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"donors": [
|
| 24 |
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"HS3",
|
| 25 |
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"HS6",
|
| 26 |
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"HS7",
|
| 27 |
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"HS13",
|
| 28 |
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"HS18",
|
| 29 |
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"HS31",
|
| 30 |
+
"HS34",
|
| 31 |
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"HS37",
|
| 32 |
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"HS38",
|
| 33 |
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"HS52",
|
| 34 |
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"HS58",
|
| 35 |
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"HS60",
|
| 36 |
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"HS66",
|
| 37 |
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"HS81",
|
| 38 |
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"HS82",
|
| 39 |
+
"HS83",
|
| 40 |
+
"HS85",
|
| 41 |
+
"HS86",
|
| 42 |
+
"HS95",
|
| 43 |
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"HS98",
|
| 44 |
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"HS101",
|
| 45 |
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"HS107"
|
| 46 |
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],
|
| 47 |
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"n_donors": 22,
|
| 48 |
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"reference": {
|
| 49 |
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"cache": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/immicro",
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| 50 |
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"reference_sha256": "c5e2547be3ec3b12cb0c0b404a49e14a046ae59d40be70427f98f083a76bce17",
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| 51 |
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"features_sha256": "735255066ce7ebbac13a1fdfd058e26f31edd60314cc02fd589b0a292dbbc838",
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| 52 |
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"n_r1_cells": 3300,
|
| 53 |
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"pca": {
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| 54 |
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"n_components": 50,
|
| 55 |
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"explained_variance_ratio_sum": 0.305976539850235,
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| 56 |
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"n_fit_cells": 3300
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| 57 |
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},
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| 58 |
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"r2_control": {
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| 59 |
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"precision": 0.9957575757575757,
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| 60 |
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"coverage": 1.0,
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| 61 |
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"density": 2.6083333333333334,
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| 62 |
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"n_query": 3300,
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| 63 |
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"depth_matched": {
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| 64 |
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"precision": 0.9936363636363637,
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| 65 |
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"coverage": 1.0,
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| 66 |
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"density": 2.558878787878788
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| 67 |
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}
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| 68 |
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},
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| 69 |
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"observed_l1_loo_null_mean": 0.16302776481179745
|
| 70 |
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},
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| 71 |
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"contrast_definition": {
|
| 72 |
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"enabled": false,
|
| 73 |
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"reason": "--no-contrast"
|
| 74 |
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},
|
| 75 |
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"deg_definition": {
|
| 76 |
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"enabled": false,
|
| 77 |
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"reason": "--no-deg"
|
| 78 |
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},
|
| 79 |
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"headline": {
|
| 80 |
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"lora": {
|
| 81 |
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"comp_l1": 0.12619402003264532,
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| 82 |
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"comp_l1_obs_loo_null": 0.16302776481179745,
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| 83 |
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"precision": 0.9945454545454545,
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| 84 |
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"coverage": 0.9287878787878788,
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| 85 |
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"precision_dm": 0.9960606060606061,
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| 86 |
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"coverage_dm": 0.9918181818181818,
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| 87 |
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"pb_r_median": 0.9071654487371384,
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| 88 |
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"pb_top1": 0.22727272727272727,
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| 89 |
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"mono_pct_gen": 15.56363636363636,
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| 90 |
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"mono_pct_obs": 18.503211518737277,
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| 91 |
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"median_umi_gen": 2768.0,
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| 92 |
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"median_umi_obs": 1976.0,
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| 93 |
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"seconds": 10.3
|
| 94 |
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}
|
| 95 |
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},
|
| 96 |
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"per_arm": {
|
| 97 |
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"lora": {
|
| 98 |
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"arm": "lora",
|
| 99 |
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"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold0/n40/lora.npz",
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| 100 |
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"npz_sha256": "d7b1c36d6d67159955f871cc61fbd8731f89f2fe3286921a259c281c949971ae",
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| 101 |
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"receipt_verified": true,
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| 102 |
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"generation": {
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| 103 |
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"checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold0/n40/lora/checkpoint_ft.pt",
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| 104 |
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"checkpoint_sha256": "5b19457e31d75884885163931736e092e586a9f16259362d622f78a957721cea",
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"input_condition_path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold0/n40/test_raw.npz",
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| 106 |
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"input_condition_sha256": "51ad5b8f668b55d80d2f8d275a3a2a9b56f7daa768d6b607dcea4b7379465f60",
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| 107 |
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"seed": 20260928,
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| 108 |
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"steps": 50,
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| 109 |
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"support_readout": "bernoulli",
|
| 110 |
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"weights": "ema"
|
| 111 |
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},
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| 112 |
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"condition_for_broadcast": null,
|
| 113 |
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"poisson": {
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| 114 |
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"seed": 20260916,
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| 115 |
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"rule": "whole NPZ, rows in NPZ order",
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| 116 |
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"nnz_whole_npz": 9910366,
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| 117 |
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"median_library_whole_npz_panel": 2769.0,
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| 118 |
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"n_rows_whole_npz": 33000
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| 119 |
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},
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| 120 |
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"annotation": {
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| 121 |
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"model_pt_sha256": "bf3655899e5abee435340fc008656c4a17342da0f30b70cfd43de8e9223e1930",
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| 122 |
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"zero_padded_model_genes": 1,
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| 123 |
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"label_counts": {
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| 124 |
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"T cell": 21581,
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| 125 |
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"Monocyte": 5136,
|
| 126 |
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"B cell": 2587,
|
| 127 |
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"NK cell": 2151,
|
| 128 |
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"DC": 1184,
|
| 129 |
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"Other": 361
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| 130 |
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},
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| 131 |
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"mean_l2_max_prob": 0.9146425780270135,
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| 132 |
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| 133 |
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| 134 |
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"n_donors": 22,
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| 135 |
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"n_generated_cells": 33000,
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| 136 |
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| 147 |
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"DC": 0.035879,
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| 148 |
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| 149 |
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| 150 |
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| 151 |
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| 153 |
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"Monocyte": 0.185032,
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| 155 |
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| 156 |
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| 157 |
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| 158 |
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| 159 |
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"pseudobulk": {
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| 160 |
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| 164 |
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| 167 |
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| 170 |
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"n_query": 3300,
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| 173 |
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"n_reference": 3300
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| 174 |
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| 175 |
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| 176 |
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"detected_median_before": {
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| 181 |
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|
| 182 |
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| 183 |
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"detected_median_after": {
|
| 184 |
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"R1": 290.0,
|
| 185 |
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"Q": 290.0
|
| 186 |
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|
| 187 |
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|
| 188 |
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"monocyte_pct": {
|
| 189 |
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"generated_mean_over_donors": 15.56363636363636,
|
| 190 |
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"observed_mean_over_donors": 18.503211518737277,
|
| 191 |
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| 192 |
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| 193 |
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|
| 194 |
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"generated_pooled": 2768.0,
|
| 195 |
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| 196 |
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| 197 |
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|
| 198 |
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|
| 199 |
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"seconds": 10.3
|
| 200 |
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}
|
| 201 |
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},
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| 202 |
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"code_sha256": {
|
| 203 |
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"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
|
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|
| 205 |
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"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/umap/cell_immicro_5arm/tools/stage_b_embed.py": "d056cfdf38fb0e5f478756f370174e993b75d0c973c48e02e21749175a4ca2da",
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"/home/sj_server_1/PBISC/immun-pbmc-fm/bulk2sc-paper/scripts/evaluate_generated_vs_truth.py": "48b12d794782b840838853e93e0fc55fab00532c4b3698f4588e926b985d2881",
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| 207 |
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"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/immicro/tools/immicro_common.py": "c5c30e917148cc5e664e91ea30c11bbdff9b6d1f53a3e0a13e16b1917eff37e9",
|
| 208 |
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"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/predict_scanvi.py": "482ee5dcf4d72b54bc36cbb6dcff62e5030bc7afc46cb5fb01eca73a82ee45a5",
|
| 209 |
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"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/poisson_readout.py": "8bfa080942fbcdc89ae23b276524a1a83266fb8cbc56b9af279e50f82e6cde38"
|
| 210 |
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},
|
| 211 |
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"seconds": 13.0
|
| 212 |
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}
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/cdc350629149cd72/donor_bootstrap_2000.csv
ADDED
|
@@ -0,0 +1,113 @@
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|
| 1 |
+
arm,baseline,estimate,ci_low,ci_high,n_donors,n_paired_samples,n_excluded_nonfinite_pairs,n_boot,seed,bootstrap_unit,metric,status
|
| 2 |
+
pairedcal,lora,0.04630988635634569,0.015244602631678407,0.08028344956305501,52,143,0,2000,20261012,donor_all_draws_and_visits,comp_l1,ok
|
| 3 |
+
raw,lora,0.4133762025693107,0.30231872088937345,0.5274041585596886,52,143,0,2000,20261012,donor_all_draws_and_visits,comp_l1,ok
|
| 4 |
+
refcal,lora,0.0594029765428068,-0.0010109938617412994,0.12516657629335617,52,143,0,2000,20261012,donor_all_draws_and_visits,comp_l1,ok
|
| 5 |
+
scsemi,lora,0.09372603993936379,0.04792433544592898,0.1373135502768996,52,143,0,2000,20261012,donor_all_draws_and_visits,comp_l1,ok
|
| 6 |
+
pairedcal,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,comp_l1_obs_loo_null,ok
|
| 7 |
+
raw,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,comp_l1_obs_loo_null,ok
|
| 8 |
+
refcal,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,comp_l1_obs_loo_null,ok
|
| 9 |
+
scsemi,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,comp_l1_obs_loo_null,ok
|
| 10 |
+
pairedcal,lora,-0.15046528594316208,-0.20213676030213643,-0.09959761160361273,52,143,0,2000,20261012,donor_all_draws_and_visits,coverage,ok
|
| 11 |
+
raw,lora,-0.6828666919363822,-0.7187444225912979,-0.6458312571554551,52,143,0,2000,20261012,donor_all_draws_and_visits,coverage,ok
|
| 12 |
+
refcal,lora,-0.4616344838789529,-0.5185793147824398,-0.40501763667134244,52,143,0,2000,20261012,donor_all_draws_and_visits,coverage,ok
|
| 13 |
+
scsemi,lora,-0.7375435034483705,-0.7640797904805372,-0.7092215604608031,52,143,0,2000,20261012,donor_all_draws_and_visits,coverage,ok
|
| 14 |
+
pairedcal,lora,-0.1979306148620308,-0.24786236793565336,-0.14983006853335948,52,143,0,2000,20261012,donor_all_draws_and_visits,coverage_depth_matched,ok
|
| 15 |
+
raw,lora,-0.7714462941188605,-0.8093066402623924,-0.7336456045306708,52,143,0,2000,20261012,donor_all_draws_and_visits,coverage_depth_matched,ok
|
| 16 |
+
refcal,lora,-0.3973201793290289,-0.45847417950780783,-0.3367603708545634,52,143,0,2000,20261012,donor_all_draws_and_visits,coverage_depth_matched,ok
|
| 17 |
+
scsemi,lora,-0.7659298163734005,-0.7925658197014392,-0.7391505345533277,52,143,0,2000,20261012,donor_all_draws_and_visits,coverage_depth_matched,ok
|
| 18 |
+
pairedcal,lora,-0.03919155982905983,-0.04730459401709401,-0.032682646901709404,52,143,0,2000,20261012,donor_all_draws_and_visits,gen_B cell,ok
|
| 19 |
+
raw,lora,-0.047336217948717944,-0.060904783653846155,-0.036047892628205125,52,143,0,2000,20261012,donor_all_draws_and_visits,gen_B cell,ok
|
| 20 |
+
refcal,lora,-0.03990555555555554,-0.04959031249999998,-0.0314782905982906,52,143,0,2000,20261012,donor_all_draws_and_visits,gen_B cell,ok
|
| 21 |
+
scsemi,lora,-0.044962072649572644,-0.06038547809829059,-0.031467077991452985,52,143,0,2000,20261012,donor_all_draws_and_visits,gen_B cell,ok
|
| 22 |
+
pairedcal,lora,-0.02323365384615385,-0.02711260683760683,-0.019313667200854704,52,143,0,2000,20261012,donor_all_draws_and_visits,gen_DC,ok
|
| 23 |
+
raw,lora,-0.017719764957264964,-0.021710085470085475,-0.013632467948717959,52,143,0,2000,20261012,donor_all_draws_and_visits,gen_DC,ok
|
| 24 |
+
refcal,lora,-0.01592339743589744,-0.019814855769230772,-0.012100510149572656,52,143,0,2000,20261012,donor_all_draws_and_visits,gen_DC,ok
|
| 25 |
+
scsemi,lora,-0.009753632478632483,-0.01467693910256411,-0.004653402777777781,52,143,0,2000,20261012,donor_all_draws_and_visits,gen_DC,ok
|
| 26 |
+
pairedcal,lora,0.04388354700854699,0.025488934294871774,0.06474901709401705,52,143,0,2000,20261012,donor_all_draws_and_visits,gen_Monocyte,ok
|
| 27 |
+
raw,lora,0.40136014957264954,0.3654608226495727,0.43718944978632474,52,143,0,2000,20261012,donor_all_draws_and_visits,gen_Monocyte,ok
|
| 28 |
+
refcal,lora,0.149299358974359,0.12198354700854705,0.1809938301282051,52,143,0,2000,20261012,donor_all_draws_and_visits,gen_Monocyte,ok
|
| 29 |
+
scsemi,lora,-0.026960897435897444,-0.04194728899572651,-0.012636792200854724,52,143,0,2000,20261012,donor_all_draws_and_visits,gen_Monocyte,ok
|
| 30 |
+
pairedcal,lora,-0.008293376068376063,-0.017537110042735043,0.00048687499999999876,52,143,0,2000,20261012,donor_all_draws_and_visits,gen_NK cell,ok
|
| 31 |
+
raw,lora,0.008205876068376071,-0.003123894230769227,0.019713597756410264,52,143,0,2000,20261012,donor_all_draws_and_visits,gen_NK cell,ok
|
| 32 |
+
refcal,lora,-0.015663354700854698,-0.02696325053418804,-0.005415689102564104,52,143,0,2000,20261012,donor_all_draws_and_visits,gen_NK cell,ok
|
| 33 |
+
scsemi,lora,-0.02128429487179486,-0.03318091346153845,-0.010258693910256408,52,143,0,2000,20261012,donor_all_draws_and_visits,gen_NK cell,ok
|
| 34 |
+
pairedcal,lora,0.007286004273504279,0.005024025106837613,0.010354561965811969,52,143,0,2000,20261012,donor_all_draws_and_visits,gen_Other,ok
|
| 35 |
+
raw,lora,0.01089711538461538,0.008572633547008537,0.013773667200854699,52,143,0,2000,20261012,donor_all_draws_and_visits,gen_Other,ok
|
| 36 |
+
refcal,lora,0.02093002136752136,0.015703442841880338,0.028623739316239315,52,143,0,2000,20261012,donor_all_draws_and_visits,gen_Other,ok
|
| 37 |
+
scsemi,lora,0.003988995726495724,0.0014869364316239355,0.007043386752136753,52,143,0,2000,20261012,donor_all_draws_and_visits,gen_Other,ok
|
| 38 |
+
pairedcal,lora,0.019549038461538455,0.0015987366452991337,0.03623887820512819,52,143,0,2000,20261012,donor_all_draws_and_visits,gen_T cell,ok
|
| 39 |
+
raw,lora,-0.35540715811965806,-0.3773229407051281,-0.33478069444444447,52,143,0,2000,20261012,donor_all_draws_and_visits,gen_T cell,ok
|
| 40 |
+
refcal,lora,-0.09873707264957267,-0.11978685897435896,-0.07910991452991456,52,143,0,2000,20261012,donor_all_draws_and_visits,gen_T cell,ok
|
| 41 |
+
scsemi,lora,0.0989719017094017,0.07029573985042734,0.12885520566239317,52,143,0,2000,20261012,donor_all_draws_and_visits,gen_T cell,ok
|
| 42 |
+
pairedcal,lora,181.35432692307694,132.8685436698718,225.77601161858973,52,143,0,2000,20261012,donor_all_draws_and_visits,median_umi_gen,ok
|
| 43 |
+
raw,lora,-123.44062499999998,-186.9845172275641,-60.492265625,52,143,0,2000,20261012,donor_all_draws_and_visits,median_umi_gen,ok
|
| 44 |
+
refcal,lora,54.16826923076923,-12.149689503205131,119.66754006410255,52,143,0,2000,20261012,donor_all_draws_and_visits,median_umi_gen,ok
|
| 45 |
+
scsemi,lora,62.764022435897445,9.628445512820505,115.33142027243576,52,143,0,2000,20261012,donor_all_draws_and_visits,median_umi_gen,ok
|
| 46 |
+
pairedcal,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,median_umi_obs,ok
|
| 47 |
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raw,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,median_umi_obs,ok
|
| 48 |
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refcal,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,median_umi_obs,ok
|
| 49 |
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scsemi,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,median_umi_obs,ok
|
| 50 |
+
pairedcal,lora,4.388354700854701,2.5488934294871797,6.474901709401705,52,143,0,2000,20261012,donor_all_draws_and_visits,mono_pct_gen,ok
|
| 51 |
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raw,lora,40.13601495726495,36.54608226495727,43.71894497863247,52,143,0,2000,20261012,donor_all_draws_and_visits,mono_pct_gen,ok
|
| 52 |
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refcal,lora,14.929935897435895,12.198354700854699,18.09938301282051,52,143,0,2000,20261012,donor_all_draws_and_visits,mono_pct_gen,ok
|
| 53 |
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scsemi,lora,-2.6960897435897433,-4.19472889957265,-1.263679220085471,52,143,0,2000,20261012,donor_all_draws_and_visits,mono_pct_gen,ok
|
| 54 |
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pairedcal,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,mono_pct_obs,ok
|
| 55 |
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raw,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,mono_pct_obs,ok
|
| 56 |
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refcal,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,mono_pct_obs,ok
|
| 57 |
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scsemi,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,mono_pct_obs,ok
|
| 58 |
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pairedcal,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,n_generated_cells,ok
|
| 59 |
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raw,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,n_generated_cells,ok
|
| 60 |
+
refcal,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,n_generated_cells,ok
|
| 61 |
+
scsemi,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,n_generated_cells,ok
|
| 62 |
+
pairedcal,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,n_observed_cells,ok
|
| 63 |
+
raw,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,n_observed_cells,ok
|
| 64 |
+
refcal,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,n_observed_cells,ok
|
| 65 |
+
scsemi,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,n_observed_cells,ok
|
| 66 |
+
pairedcal,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,n_reference_cells,ok
|
| 67 |
+
raw,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,n_reference_cells,ok
|
| 68 |
+
refcal,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,n_reference_cells,ok
|
| 69 |
+
scsemi,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,n_reference_cells,ok
|
| 70 |
+
pairedcal,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,obs_B cell,ok
|
| 71 |
+
raw,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,obs_B cell,ok
|
| 72 |
+
refcal,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,obs_B cell,ok
|
| 73 |
+
scsemi,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,obs_B cell,ok
|
| 74 |
+
pairedcal,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,obs_DC,ok
|
| 75 |
+
raw,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,obs_DC,ok
|
| 76 |
+
refcal,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,obs_DC,ok
|
| 77 |
+
scsemi,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,obs_DC,ok
|
| 78 |
+
pairedcal,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,obs_Monocyte,ok
|
| 79 |
+
raw,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,obs_Monocyte,ok
|
| 80 |
+
refcal,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,obs_Monocyte,ok
|
| 81 |
+
scsemi,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,obs_Monocyte,ok
|
| 82 |
+
pairedcal,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,obs_NK cell,ok
|
| 83 |
+
raw,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,obs_NK cell,ok
|
| 84 |
+
refcal,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,obs_NK cell,ok
|
| 85 |
+
scsemi,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,obs_NK cell,ok
|
| 86 |
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pairedcal,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,obs_Other,ok
|
| 87 |
+
raw,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,obs_Other,ok
|
| 88 |
+
refcal,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,obs_Other,ok
|
| 89 |
+
scsemi,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,obs_Other,ok
|
| 90 |
+
pairedcal,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,obs_T cell,ok
|
| 91 |
+
raw,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,obs_T cell,ok
|
| 92 |
+
refcal,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,obs_T cell,ok
|
| 93 |
+
scsemi,lora,0.0,0.0,0.0,52,143,0,2000,20261012,donor_all_draws_and_visits,obs_T cell,ok
|
| 94 |
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pairedcal,lora,1.8850961538461537,-2.092788461538462,6.040324519230768,52,143,0,2000,20261012,donor_all_draws_and_visits,pb_own_rank,ok
|
| 95 |
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raw,lora,24.07740384615385,11.177596153846157,37.445781249999996,52,143,0,2000,20261012,donor_all_draws_and_visits,pb_own_rank,ok
|
| 96 |
+
refcal,lora,6.890064102564103,1.0968189102564097,13.272964743589739,52,143,0,2000,20261012,donor_all_draws_and_visits,pb_own_rank,ok
|
| 97 |
+
scsemi,lora,4.9966346153846155,-1.1517988782051283,10.848369391025637,52,143,0,2000,20261012,donor_all_draws_and_visits,pb_own_rank,ok
|
| 98 |
+
pairedcal,lora,-0.003266469364514476,-0.00512605234386843,-0.0014632444519446692,52,143,0,2000,20261012,donor_all_draws_and_visits,pb_r,ok
|
| 99 |
+
raw,lora,0.006484519505849006,-0.0015385048510573247,0.013650238110205605,52,143,0,2000,20261012,donor_all_draws_and_visits,pb_r,ok
|
| 100 |
+
refcal,lora,-0.017691938218367235,-0.020619033865914006,-0.015080102980680661,52,143,0,2000,20261012,donor_all_draws_and_visits,pb_r,ok
|
| 101 |
+
scsemi,lora,-0.26154579014873536,-0.27621515308166117,-0.24676339356638954,52,143,0,2000,20261012,donor_all_draws_and_visits,pb_r,ok
|
| 102 |
+
pairedcal,lora,0.012820512820512822,-0.044871794871794865,0.07692307692307694,52,143,0,2000,20261012,donor_all_draws_and_visits,pb_top1,ok
|
| 103 |
+
raw,lora,-0.09455128205128203,-0.19393028846153845,-0.0008012820512820506,52,143,0,2000,20261012,donor_all_draws_and_visits,pb_top1,ok
|
| 104 |
+
refcal,lora,-0.044871794871794865,-0.141025641025641,0.04487179487179487,52,143,0,2000,20261012,donor_all_draws_and_visits,pb_top1,ok
|
| 105 |
+
scsemi,lora,-0.09070512820512819,-0.19233173076923077,0.0016185897435896616,52,143,0,2000,20261012,donor_all_draws_and_visits,pb_top1,ok
|
| 106 |
+
pairedcal,lora,-0.0026447396015980198,-0.014157609751359764,0.008641912981929564,52,143,0,2000,20261012,donor_all_draws_and_visits,precision,ok
|
| 107 |
+
raw,lora,-0.3688244726021275,-0.39946715235661584,-0.33698661455002715,52,143,0,2000,20261012,donor_all_draws_and_visits,precision,ok
|
| 108 |
+
refcal,lora,-0.03241181041181041,-0.044699528943278964,-0.018092467948717966,52,143,0,2000,20261012,donor_all_draws_and_visits,precision,ok
|
| 109 |
+
scsemi,lora,-0.615275312691242,-0.6442413614961735,-0.5829031132461442,52,143,0,2000,20261012,donor_all_draws_and_visits,precision,ok
|
| 110 |
+
pairedcal,lora,-0.03362830225330225,-0.04219046717171717,-0.02522351884226884,52,143,0,2000,20261012,donor_all_draws_and_visits,precision_depth_matched,ok
|
| 111 |
+
raw,lora,-0.35817412810886257,-0.3829947314362137,-0.3337789384226884,52,143,0,2000,20261012,donor_all_draws_and_visits,precision_depth_matched,ok
|
| 112 |
+
refcal,lora,-0.06675097382951364,-0.07935624527267227,-0.05433022086075185,52,143,0,2000,20261012,donor_all_draws_and_visits,precision_depth_matched,ok
|
| 113 |
+
scsemi,lora,-0.49488334416321145,-0.5185605065073816,-0.469197887314259,52,143,0,2000,20261012,donor_all_draws_and_visits,precision_depth_matched,ok
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/ea523d50d5a7aa9e/status.json
ADDED
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@@ -0,0 +1,18 @@
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| 1 |
+
{
|
| 2 |
+
"schema": "pbisc.paper.strict-statistics.v1",
|
| 3 |
+
"support_sha256": "28fb70b356b7850892eab0f7c543f47d99041c1b6ac91d776d04125d532c08ce",
|
| 4 |
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"bootstrap_unit": "unique_donor_all_visits_and_draws",
|
| 5 |
+
"bootstrap_replicates": 2000,
|
| 6 |
+
"draws": [
|
| 7 |
+
"draw3_n5"
|
| 8 |
+
],
|
| 9 |
+
"disease_deg": {
|
| 10 |
+
"status": "ok",
|
| 11 |
+
"method": "donor_condition_pseudobulk_limma_duplicateCorrelation_if_repeated_condition",
|
| 12 |
+
"n_genes_kept": 5927,
|
| 13 |
+
"rows": 25,
|
| 14 |
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"n_pending": 0,
|
| 15 |
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"n_not_estimable": 0,
|
| 16 |
+
"summary_csv": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/imperial_eskd/disease/draw3/statistics/donor_deg/donor_deg_summary.csv"
|
| 17 |
+
}
|
| 18 |
+
}
|