Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261013T005008Z-reuse-audit-results-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/deconvolution/ye2026_sepsis/disease/draw3/ADOPTION.json +384 -0
- paper-releases/pbisc-diffusion/updates/20261013T005008Z-reuse-audit-results-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/deconvolution/ye2026_sepsis/disease/draw4/ADOPTION.json +384 -0
- paper-releases/pbisc-diffusion/updates/20261013T005008Z-reuse-audit-results-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/layout_preview_20261013/README.md +6 -0
- paper-releases/pbisc-diffusion/updates/20261013T005008Z-reuse-audit-results-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/layout_preview_20261013/SUPERSEDED.json +7 -0
paper-releases/pbisc-diffusion/updates/20261013T005008Z-reuse-audit-results-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/deconvolution/ye2026_sepsis/disease/draw3/ADOPTION.json
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| 1 |
+
{
|
| 2 |
+
"schema": "pbisc.deconvolution.adopted-legacy.v1",
|
| 3 |
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"support_sha256": "ab2ccffd21a8efa2b23ed420fbcdf06d9ac3c8045649e69b11388a9af0d13cc4",
|
| 4 |
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"cohort": "ye2026_sepsis",
|
| 5 |
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"unit": "draw3_n5",
|
| 6 |
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"reference_sample_ids": [
|
| 7 |
+
"PHC05",
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| 8 |
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"Res-S139",
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| 9 |
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"Res-S174",
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| 10 |
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"Skin-S142",
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| 11 |
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"Abd-S57"
|
| 12 |
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],
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| 13 |
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"mixture_sample_ids": [
|
| 14 |
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"Abd-PS04",
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| 15 |
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| 16 |
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| 17 |
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| 18 |
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| 19 |
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| 20 |
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| 22 |
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| 23 |
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| 24 |
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| 25 |
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"Abd-S156",
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| 26 |
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| 27 |
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"Abd-S42",
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| 28 |
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"Abd-S47",
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| 29 |
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"Abd-S51",
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| 30 |
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"Abd-S54",
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| 31 |
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"Abd-S66",
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| 32 |
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"Abd-S79",
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| 33 |
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"Abd-S83",
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| 34 |
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"Abd-S98",
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| 35 |
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"HC01",
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| 36 |
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"HC05",
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| 37 |
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"HC07",
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| 38 |
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"HC09",
|
| 39 |
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"HC12",
|
| 40 |
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"HC13",
|
| 41 |
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"HC16",
|
| 42 |
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"IC10",
|
| 43 |
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"IC15",
|
| 44 |
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"IC16",
|
| 45 |
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"IC19",
|
| 46 |
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"IC22",
|
| 47 |
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"IC23",
|
| 48 |
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"PHC01",
|
| 49 |
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"PHC02",
|
| 50 |
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"PHC03",
|
| 51 |
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"PIC01",
|
| 52 |
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"PIC02",
|
| 53 |
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"PIC04",
|
| 54 |
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"PIC05",
|
| 55 |
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"Res-PS02",
|
| 56 |
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"Res-PS03",
|
| 57 |
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"Res-PS12",
|
| 58 |
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"Res-PS16",
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| 59 |
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"Res-PS21",
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| 60 |
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"Res-PS22",
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| 61 |
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"Res-PS25",
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| 62 |
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"Res-PS26",
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| 63 |
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"Res-S10",
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| 64 |
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"Res-S125",
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| 65 |
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| 66 |
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| 67 |
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"Res-S146",
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| 68 |
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"Res-S149",
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| 69 |
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"Res-S150",
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| 70 |
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"Res-S164",
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| 71 |
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"Res-S166",
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| 72 |
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"Res-S177",
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| 73 |
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"Res-S184",
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| 74 |
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"Res-S19",
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| 75 |
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| 76 |
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"Res-S40",
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| 77 |
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"Res-S77",
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| 78 |
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"Res-S87",
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| 79 |
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"Skin-S140",
|
| 80 |
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"Skin-S152",
|
| 81 |
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"Skin-S38",
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| 82 |
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"Skin-S43",
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| 83 |
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"Skin-S46",
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| 84 |
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"Skin-S52",
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| 85 |
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"Skin-S74",
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| 86 |
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"Uri-S134",
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| 87 |
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"Uri-S147",
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| 88 |
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"Uri-S157",
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| 89 |
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"Uri-S20",
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| 90 |
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"Uri-S93"
|
| 91 |
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],
|
| 92 |
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"legacy_draw_index": 3,
|
| 93 |
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"legacy_split": "fewshot3",
|
| 94 |
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"method_execution": "historical_outputs_reused_no_method_execution",
|
| 95 |
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"input_equivalence": "exact support and ordered mixtures; original recorded draw-specific reference-cell subsampling retained",
|
| 96 |
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"output_hash_basis": "current historical completed and scored files, verified now; not a retroactive native execution receipt",
|
| 97 |
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"aggregate_source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bayesprism_paired_20261006/data/ye2026_sepsis/aggregates_full.npz",
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| 98 |
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"aggregate_sha256": "1c866cbb8990359c870f46804e55cbae4a38cb82b5e0bf5f47bd9a552ada966a",
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| 99 |
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"fraction_serialization_max_abs_error": 1.1102230246251565e-16,
|
| 100 |
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"legacy_endpoints": {
|
| 101 |
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"full": {
|
| 102 |
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"n_samples": 77,
|
| 103 |
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"has_cell_type_expression": true,
|
| 104 |
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"hires_imputed_genes": null,
|
| 105 |
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"old_scores_reused": false,
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| 106 |
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"fresh_corrected_scoring_required": true,
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| 107 |
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"recorded_scorer_sha256": "15ed044bbfc39c501c7187ad78586902f2aa0635e7b3a90786b4587cedc2008a",
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| 108 |
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"current_scorer_sha256": "b541f68dc286497e8347d487af58ff3550a383d126eeabe347c0726e4fb28799",
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| 109 |
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"scorer_source_matches_current": false
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| 110 |
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},
|
| 111 |
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"cibersortx": {
|
| 112 |
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"n_samples": 77,
|
| 113 |
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"has_cell_type_expression": true,
|
| 114 |
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"hires_imputed_genes": {
|
| 115 |
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"fewshot3|T cell": 4452,
|
| 116 |
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"fewshot3|B cell": 2559,
|
| 117 |
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"fewshot3|Monocyte": 1847,
|
| 118 |
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"fewshot3|NK cell": 2482,
|
| 119 |
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"fewshot3|DC": 1895,
|
| 120 |
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"fewshot3|Other": 1132
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| 121 |
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},
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| 122 |
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"old_scores_reused": false,
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| 123 |
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| 124 |
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| 125 |
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| 126 |
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| 127 |
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}
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| 128 |
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},
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| 129 |
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| 131 |
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"source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bayesprism_paired_20261006/tools/score_bp.py",
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|
| 375 |
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| 376 |
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|
| 377 |
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|
| 378 |
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| 383 |
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paper-releases/pbisc-diffusion/updates/20261013T005008Z-reuse-audit-results-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/deconvolution/ye2026_sepsis/disease/draw4/ADOPTION.json
ADDED
|
@@ -0,0 +1,384 @@
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| 1 |
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{
|
| 2 |
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"schema": "pbisc.deconvolution.adopted-legacy.v1",
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|
| 5 |
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"unit": "draw4_n5",
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"reference_sample_ids": [
|
| 7 |
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],
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| 45 |
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| 52 |
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| 54 |
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| 55 |
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"sha256": "b04d6ca928f741623960f8a23a977aa6cb0a97e7391a16577c64a57730df38c2",
|
| 367 |
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"bytes": 7868,
|
| 368 |
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"view": "tools/run_cibersortx.sh"
|
| 369 |
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},
|
| 370 |
+
{
|
| 371 |
+
"source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bayesprism_paired_20261006/tools/score_bp.py",
|
| 372 |
+
"sha256": "b541f68dc286497e8347d487af58ff3550a383d126eeabe347c0726e4fb28799",
|
| 373 |
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"bytes": 23119,
|
| 374 |
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"view": "tools/score_bp.py"
|
| 375 |
+
},
|
| 376 |
+
{
|
| 377 |
+
"source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py",
|
| 378 |
+
"sha256": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
|
| 379 |
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"bytes": 56320,
|
| 380 |
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"view": null
|
| 381 |
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}
|
| 382 |
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],
|
| 383 |
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"receipt_sha256": "323d9921f20329daaf2b41c282d1c2cbea2c7e48ae9ddb08d6c1eef01f9a57ed"
|
| 384 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261013T005008Z-reuse-audit-results-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/layout_preview_20261013/README.md
ADDED
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@@ -0,0 +1,6 @@
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| 1 |
+
# Superseded layout preview
|
| 2 |
+
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| 3 |
+
The generated TODO-heavy review files have been removed after verified archive read-back at the user's request.
|
| 4 |
+
Current available-results deck: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/presentations/2026-09-30--paper-summary--r00/PBISC-Diffusion_results_review_20261013.pdf
|
| 5 |
+
|
| 6 |
+
Original provenance, panel map, status snapshot and archive pointer remain as audit records. See ../audit_reuse_20261013/CLEANUP.json.
|
paper-releases/pbisc-diffusion/updates/20261013T005008Z-reuse-audit-results-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/layout_preview_20261013/SUPERSEDED.json
ADDED
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@@ -0,0 +1,7 @@
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| 1 |
+
{
|
| 2 |
+
"status": "superseded_generated_files_removed",
|
| 3 |
+
"replacement": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/presentations/2026-09-30--paper-summary--r00/PBISC-Diffusion_results_review_20261013.pdf",
|
| 4 |
+
"archive_update": "20261012T233237Z-figure-layout-todo",
|
| 5 |
+
"cleanup_receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/audit_reuse_20261013/CLEANUP.json",
|
| 6 |
+
"audit_metadata_preserved": true
|
| 7 |
+
}
|