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  1. paper-releases/pbisc-diffusion/updates/20261005T063808Z-no-pretraining-ablation-f0/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/extra-sepsis-f0-scratch_20261005T133609.log +59 -0
  2. paper-releases/pbisc-diffusion/updates/20261005T063808Z-no-pretraining-ablation-f0/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/extra-sepsis-f0-scratch_20261005T135915.log +75 -0
  3. paper-releases/pbisc-diffusion/updates/20261005T063808Z-no-pretraining-ablation-f0/diffusion/metadata/inference_locations.json +132 -0
  4. paper-releases/pbisc-diffusion/updates/20261005T063808Z-no-pretraining-ablation-f0/diffusion/metadata/request.json +584 -0
paper-releases/pbisc-diffusion/updates/20261005T063808Z-no-pretraining-ablation-f0/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/extra-sepsis-f0-scratch_20261005T133609.log ADDED
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1
+ 13:36:10 ye2026_sepsis scored : 17 scored samples; fitting the scorer's view
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+ 13:36:12 bandwidth m (median pairwise distance of R1, PCA-50) = 29.4295
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+ 13:36:19 observed cells: 131629 in 17 samples; R1/R2 rebuilt = reference.npz; R3 2550 cells (0 samples with fewer than n)
4
+ 13:36:35 real_R2 [R1 raw] P/C k10 0.9969/1.0000 k5 0.9855/0.9957 k3 0.9647/0.9631 | AUC knn 0.569 rf 0.810 | 1-NN 0.535 | MMD2 0.0005 (5.0 s)
5
+ 13:36:40 real_R2 [R1 dm] P/C k10 0.9961/1.0000 k5 0.9839/0.9969 k3 0.9624/0.9608 | AUC knn 0.561 rf 0.801 | 1-NN 0.534 | MMD2 0.0005 (5.1 s)
6
+ 13:36:45 real_R3 [R2 raw] AUC knn 0.499 rf 0.488 | 1-NN 0.508 | MMD2 -0.0001 (3.9 s)
7
+ 13:36:49 real_R3 [R2 dm] AUC knn 0.497 rf 0.500 | 1-NN 0.505 | MMD2 -0.0001 (4.0 s)
8
+ 13:36:58 real_R2 E_N[pc] sq 0.1683 (LB 191.933 UB 329.356 Dif 215.062) l2 0.1609 (9.2 s)
9
+ 13:37:33 real_R2 E_N[all] sq 0.0373 (LB 128.903 UB 208.543 Dif 131.870) l2 0.0336 (28.9 s)
10
+ 13:37:37 zs__raw: zs__raw.npz sha 0fc2753525dc (receipt verified), 25500 scored cells, 2550 in the P/C subsample (same rows as the scorer)
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+ 13:37:42 zs__raw [R1 raw] P/C k10 0.8788/0.1808 k5 0.7565/0.1169 k3 0.6306/0.0827 | AUC knn 0.990 rf 0.999 | 1-NN 0.976 | MMD2 0.1491 (3.6 s)
12
+ 13:37:45 zs__raw [R1 dm] P/C k10 0.7482/0.1612 k5 0.6039/0.1102 k3 0.4671/0.0776 | AUC knn 0.992 rf 0.999 | 1-NN 0.979 | MMD2 0.1511 (3.6 s)
13
+ 13:37:49 zs__raw [R2 raw] AUC knn 0.996 rf 0.998 | 1-NN 0.987 | MMD2 0.1541 (3.3 s)
14
+ 13:37:52 zs__raw [R2 dm] AUC knn 0.996 rf 0.998 | 1-NN 0.985 | MMD2 0.1553 (3.3 s)
15
+ 13:38:00 zs__raw E_N[pc] sq -9.7083 (LB 303.426 UB 266.498 Dif 661.934) l2 -10.9497 (8.2 s)
16
+ 13:38:34 zs__raw E_N[all] sq 5.5307 (LB 145.968 UB 197.623 Dif 431.653) l2 4.4320 (33.2 s)
17
+ 13:38:34 zs__raw done in 61 s
18
+ 13:38:38 lora_n5__raw: lora_n5__raw.npz sha ebaf7b85943f (receipt verified), 25500 scored cells, 2550 in the P/C subsample (same rows as the scorer)
19
+ 13:38:43 lora_n5__raw [R1 raw] P/C k10 0.9922/0.8098 k5 0.9757/0.6737 k3 0.9282/0.5718 | AUC knn 0.919 rf 0.958 | 1-NN 0.826 | MMD2 0.0218 (4.3 s)
20
+ 13:38:47 lora_n5__raw [R1 dm] P/C k10 0.9918/0.9224 k5 0.9749/0.8102 k3 0.9310/0.7063 | AUC knn 0.882 rf 0.933 | 1-NN 0.769 | MMD2 0.0142 (4.2 s)
21
+ 13:38:51 lora_n5__raw [R2 raw] AUC knn 0.928 rf 0.934 | 1-NN 0.842 | MMD2 0.0189 (3.7 s)
22
+ 13:38:55 lora_n5__raw [R2 dm] AUC knn 0.876 rf 0.906 | 1-NN 0.774 | MMD2 0.0124 (3.6 s)
23
+ 13:39:03 lora_n5__raw E_N[pc] sq 0.8863 (LB 198.493 UB 321.413 Dif 307.433) l2 0.9395 (8.5 s)
24
+ 13:39:38 lora_n5__raw E_N[all] sq 1.2060 (LB 130.420 UB 201.857 Dif 216.569) l2 1.1891 (34.2 s)
25
+ 13:39:38 lora_n5__raw done in 64 s
26
+ 13:39:42 real_lora__raw: real_lora__raw.npz sha ac9d997e155e (receipt verified), 25500 scored cells, 2550 in the P/C subsample (same rows as the scorer)
27
+ 13:39:47 real_lora__raw [R1 raw] P/C k10 0.9859/0.8584 k5 0.9443/0.7416 k3 0.8780/0.6278 | AUC knn 0.882 rf 0.942 | 1-NN 0.784 | MMD2 0.0158 (4.1 s)
28
+ 13:39:51 real_lora__raw [R1 dm] P/C k10 0.9769/0.9553 k5 0.9278/0.8745 k3 0.8722/0.7800 | AUC knn 0.817 rf 0.879 | 1-NN 0.705 | MMD2 0.0075 (4.1 s)
29
+ 13:39:55 real_lora__raw [R2 raw] AUC knn 0.877 rf 0.895 | 1-NN 0.778 | MMD2 0.0144 (3.5 s)
30
+ 13:39:58 real_lora__raw [R2 dm] AUC knn 0.806 rf 0.850 | 1-NN 0.713 | MMD2 0.0074 (3.5 s)
31
+ 13:40:07 real_lora__raw E_N[pc] sq 1.0576 (LB 223.139 UB 312.931 Dif 318.101) l2 1.1169 (8.3 s)
32
+ 13:40:38 real_lora__raw E_N[all] sq 1.1688 (LB 136.414 UB 201.761 Dif 212.794) l2 1.1720 (31.5 s)
33
+ 13:40:38 real_lora__raw done in 60 s
34
+ 13:40:42 real_full__raw: real_full__raw.npz sha 7cd7aafd3eef (receipt verified), 25500 scored cells, 2550 in the P/C subsample (same rows as the scorer)
35
+ 13:40:47 real_full__raw [R1 raw] P/C k10 0.9784/0.8714 k5 0.9227/0.7380 k3 0.8471/0.6204 | AUC knn 0.880 rf 0.931 | 1-NN 0.775 | MMD2 0.0161 (4.0 s)
36
+ 13:40:51 real_full__raw [R1 dm] P/C k10 0.9561/0.9502 k5 0.8839/0.8420 k3 0.8122/0.7357 | AUC knn 0.803 rf 0.847 | 1-NN 0.712 | MMD2 0.0060 (3.9 s)
37
+ 13:40:55 real_full__raw [R2 raw] AUC knn 0.878 rf 0.892 | 1-NN 0.769 | MMD2 0.0152 (3.5 s)
38
+ 13:40:59 real_full__raw [R2 dm] AUC knn 0.795 rf 0.836 | 1-NN 0.703 | MMD2 0.0062 (3.7 s)
39
+ 13:41:06 real_full__raw E_N[pc] sq 1.0515 (LB 225.559 UB 317.086 Dif 321.795) l2 1.0959 (7.9 s)
40
+ 13:41:37 real_full__raw E_N[all] sq 1.1762 (LB 138.120 UB 201.885 Dif 213.120) l2 1.1777 (30.7 s)
41
+ 13:41:37 real_full__raw done in 59 s
42
+ 13:41:41 scratch_full__raw: scratch_full__raw.npz sha 96d7b271d204 (receipt verified), 25500 scored cells, 2550 in the P/C subsample (same rows as the scorer)
43
+ 13:41:46 scratch_full__raw [R1 raw] P/C k10 0.9898/0.8620 k5 0.9624/0.7396 k3 0.9110/0.6271 | AUC knn 0.886 rf 0.943 | 1-NN 0.786 | MMD2 0.0185 (4.0 s)
44
+ 13:41:50 scratch_full__raw [R1 dm] P/C k10 0.9863/0.9435 k5 0.9435/0.8518 k3 0.8882/0.7408 | AUC knn 0.821 rf 0.884 | 1-NN 0.725 | MMD2 0.0082 (4.0 s)
45
+ 13:41:54 scratch_full__raw [R2 raw] AUC knn 0.895 rf 0.911 | 1-NN 0.793 | MMD2 0.0179 (3.5 s)
46
+ 13:41:57 scratch_full__raw [R2 dm] AUC knn 0.823 rf 0.878 | 1-NN 0.733 | MMD2 0.0087 (3.6 s)
47
+ 13:42:05 scratch_full__raw E_N[pc] sq 0.8511 (LB 214.216 UB 324.598 Dif 308.157) l2 0.8847 (7.7 s)
48
+ 13:42:38 scratch_full__raw E_N[all] sq 1.0772 (LB 135.639 UB 202.411 Dif 207.565) l2 1.0820 (32.6 s)
49
+ 13:42:38 scratch_full__raw done in 61 s
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+ 13:42:42 lora_recipe__raw: lora_recipe__raw.npz sha ec9b3d0f672e (receipt verified), 25500 scored cells, 2550 in the P/C subsample (same rows as the scorer)
51
+ 13:42:47 lora_recipe__raw [R1 raw] P/C k10 0.9875/0.8663 k5 0.9506/0.7439 k3 0.8867/0.6349 | AUC knn 0.887 rf 0.945 | 1-NN 0.788 | MMD2 0.0165 (4.2 s)
52
+ 13:42:51 lora_recipe__raw [R1 dm] P/C k10 0.9745/0.9541 k5 0.9365/0.8671 k3 0.8765/0.7737 | AUC knn 0.819 rf 0.875 | 1-NN 0.714 | MMD2 0.0076 (4.1 s)
53
+ 13:42:55 lora_recipe__raw [R2 raw] AUC knn 0.889 rf 0.899 | 1-NN 0.795 | MMD2 0.0151 (3.5 s)
54
+ 13:42:59 lora_recipe__raw [R2 dm] AUC knn 0.813 rf 0.850 | 1-NN 0.726 | MMD2 0.0075 (3.6 s)
55
+ 13:43:05 lora_recipe__raw E_N[pc] sq 1.0866 (LB 224.385 UB 312.697 Dif 320.345) l2 1.1447 (6.0 s)
56
+ 13:43:36 lora_recipe__raw E_N[all] sq 1.1760 (LB 136.874 UB 201.716 Dif 213.127) l2 1.1809 (31.7 s)
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+ 13:43:36 lora_recipe__raw done in 59 s
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+ 13:43:36 unit fold0_scratch_20261005 of ye2026_sepsis written to /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/ye2026_sepsis/fold0_scratch_20261005 in 446.4 s (k=10 max |diff| vs scorer 0.00e+00)
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+ UNIT_EXIT 0
paper-releases/pbisc-diffusion/updates/20261005T063808Z-no-pretraining-ablation-f0/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/extra-sepsis-f0-scratch_20261005T135915.log ADDED
@@ -0,0 +1,75 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ 13:59:16 ye2026_sepsis scored : 17 scored samples; fitting the scorer's view
2
+ 13:59:17 bandwidth m (median pairwise distance of R1, PCA-50) = 29.4295
3
+ 13:59:23 observed cells: 131629 in 17 samples; R1/R2 rebuilt = reference.npz; R3 2550 cells (0 samples with fewer than n)
4
+ 13:59:38 real_R2 [R1 raw] P/C k10 0.9969/1.0000 k5 0.9855/0.9957 k3 0.9647/0.9631 | AUC knn 0.569 rf 0.810 | 1-NN 0.535 | MMD2 0.0005 (4.6 s)
5
+ 13:59:42 real_R2 [R1 dm] P/C k10 0.9961/1.0000 k5 0.9839/0.9969 k3 0.9624/0.9608 | AUC knn 0.561 rf 0.801 | 1-NN 0.534 | MMD2 0.0005 (4.6 s)
6
+ 13:59:46 real_R3 [R2 raw] AUC knn 0.499 rf 0.488 | 1-NN 0.508 | MMD2 -0.0001 (3.6 s)
7
+ 13:59:50 real_R3 [R2 dm] AUC knn 0.497 rf 0.500 | 1-NN 0.505 | MMD2 -0.0001 (3.6 s)
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+ 13:59:56 real_R2 E_N[pc] sq 0.1683 (LB 191.933 UB 329.356 Dif 215.062) l2 0.1609 (6.5 s)
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+ 14:00:22 real_R2 E_N[all] sq 0.0373 (LB 128.903 UB 208.543 Dif 131.870) l2 0.0336 (21.5 s)
10
+ 14:00:25 zs__raw: zs__raw.npz sha 0fc2753525dc (receipt verified), 25500 scored cells, 2550 in the P/C subsample (same rows as the scorer)
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+ 14:00:29 zs__raw [R1 raw] P/C k10 0.8788/0.1808 k5 0.7565/0.1169 k3 0.6306/0.0827 | AUC knn 0.990 rf 0.999 | 1-NN 0.976 | MMD2 0.1491 (3.3 s)
12
+ 14:00:32 zs__raw [R1 dm] P/C k10 0.7482/0.1612 k5 0.6039/0.1102 k3 0.4671/0.0776 | AUC knn 0.992 rf 0.999 | 1-NN 0.979 | MMD2 0.1511 (3.2 s)
13
+ 14:00:36 zs__raw [R2 raw] AUC knn 0.996 rf 0.998 | 1-NN 0.987 | MMD2 0.1541 (2.9 s)
14
+ 14:00:38 zs__raw [R2 dm] AUC knn 0.996 rf 0.998 | 1-NN 0.985 | MMD2 0.1553 (2.9 s)
15
+ 14:00:45 zs__raw E_N[pc] sq -9.7083 (LB 303.426 UB 266.498 Dif 661.934) l2 -10.9497 (6.2 s)
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+ 14:01:07 zs__raw E_N[all] sq 5.5307 (LB 145.968 UB 197.623 Dif 431.653) l2 4.4320 (22.4 s)
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+ 14:01:07 zs__raw done in 45 s
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+ 14:01:10 lora_n5__raw: lora_n5__raw.npz sha ebaf7b85943f (receipt verified), 25500 scored cells, 2550 in the P/C subsample (same rows as the scorer)
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+ 14:01:15 lora_n5__raw [R1 raw] P/C k10 0.9922/0.8098 k5 0.9757/0.6737 k3 0.9282/0.5718 | AUC knn 0.919 rf 0.958 | 1-NN 0.826 | MMD2 0.0218 (4.0 s)
20
+ 14:01:19 lora_n5__raw [R1 dm] P/C k10 0.9918/0.9224 k5 0.9749/0.8102 k3 0.9310/0.7063 | AUC knn 0.882 rf 0.933 | 1-NN 0.769 | MMD2 0.0142 (3.9 s)
21
+ 14:01:22 lora_n5__raw [R2 raw] AUC knn 0.928 rf 0.934 | 1-NN 0.842 | MMD2 0.0189 (3.3 s)
22
+ 14:01:26 lora_n5__raw [R2 dm] AUC knn 0.876 rf 0.906 | 1-NN 0.774 | MMD2 0.0124 (3.3 s)
23
+ 14:01:31 lora_n5__raw E_N[pc] sq 0.8863 (LB 198.493 UB 321.413 Dif 307.433) l2 0.9395 (5.2 s)
24
+ 14:01:52 lora_n5__raw E_N[all] sq 1.2060 (LB 130.420 UB 201.857 Dif 216.569) l2 1.1891 (21.4 s)
25
+ 14:01:52 lora_n5__raw done in 45 s
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+ 14:01:55 scratch_n5__raw: scratch_n5__raw.npz sha 80c0222cf055 (receipt verified), 25500 scored cells, 2550 in the P/C subsample (same rows as the scorer)
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+ 14:01:59 scratch_n5__raw [R1 raw] P/C k10 0.9906/0.7980 k5 0.9667/0.6608 k3 0.9165/0.5537 | AUC knn 0.911 rf 0.958 | 1-NN 0.822 | MMD2 0.0226 (3.7 s)
28
+ 14:02:03 scratch_n5__raw [R1 dm] P/C k10 0.9941/0.9145 k5 0.9651/0.8035 k3 0.9361/0.6843 | AUC knn 0.876 rf 0.922 | 1-NN 0.761 | MMD2 0.0134 (3.5 s)
29
+ 14:02:06 scratch_n5__raw [R2 raw] AUC knn 0.930 rf 0.936 | 1-NN 0.838 | MMD2 0.0207 (3.1 s)
30
+ 14:02:10 scratch_n5__raw [R2 dm] AUC knn 0.880 rf 0.911 | 1-NN 0.788 | MMD2 0.0124 (3.2 s)
31
+ 14:02:16 scratch_n5__raw E_N[pc] sq 0.9513 (LB 203.350 UB 325.415 Dif 319.475) l2 0.9995 (6.6 s)
32
+ 14:02:40 scratch_n5__raw E_N[all] sq 1.2216 (LB 132.759 UB 202.250 Dif 217.646) l2 1.2063 (24.0 s)
33
+ 14:02:40 scratch_n5__raw done in 48 s
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+ 14:02:43 real_lora__raw: real_lora__raw.npz sha ac9d997e155e (receipt verified), 25500 scored cells, 2550 in the P/C subsample (same rows as the scorer)
35
+ 14:02:47 real_lora__raw [R1 raw] P/C k10 0.9859/0.8584 k5 0.9443/0.7416 k3 0.8780/0.6278 | AUC knn 0.882 rf 0.942 | 1-NN 0.784 | MMD2 0.0158 (3.7 s)
36
+ 14:02:51 real_lora__raw [R1 dm] P/C k10 0.9769/0.9553 k5 0.9278/0.8745 k3 0.8722/0.7800 | AUC knn 0.817 rf 0.879 | 1-NN 0.705 | MMD2 0.0075 (3.8 s)
37
+ 14:02:55 real_lora__raw [R2 raw] AUC knn 0.877 rf 0.895 | 1-NN 0.778 | MMD2 0.0144 (3.2 s)
38
+ 14:02:58 real_lora__raw [R2 dm] AUC knn 0.806 rf 0.850 | 1-NN 0.713 | MMD2 0.0074 (3.3 s)
39
+ 14:03:05 real_lora__raw E_N[pc] sq 1.0576 (LB 223.139 UB 312.931 Dif 318.101) l2 1.1169 (6.8 s)
40
+ 14:03:29 real_lora__raw E_N[all] sq 1.1688 (LB 136.414 UB 201.761 Dif 212.794) l2 1.1720 (23.9 s)
41
+ 14:03:29 real_lora__raw done in 49 s
42
+ 14:03:32 real_full__raw: real_full__raw.npz sha 7cd7aafd3eef (receipt verified), 25500 scored cells, 2550 in the P/C subsample (same rows as the scorer)
43
+ 14:03:36 real_full__raw [R1 raw] P/C k10 0.9784/0.8714 k5 0.9227/0.7380 k3 0.8471/0.6204 | AUC knn 0.880 rf 0.931 | 1-NN 0.775 | MMD2 0.0161 (3.5 s)
44
+ 14:03:39 real_full__raw [R1 dm] P/C k10 0.9561/0.9502 k5 0.8839/0.8420 k3 0.8122/0.7357 | AUC knn 0.803 rf 0.847 | 1-NN 0.712 | MMD2 0.0060 (3.6 s)
45
+ 14:03:43 real_full__raw [R2 raw] AUC knn 0.878 rf 0.892 | 1-NN 0.769 | MMD2 0.0152 (3.1 s)
46
+ 14:03:46 real_full__raw [R2 dm] AUC knn 0.795 rf 0.836 | 1-NN 0.703 | MMD2 0.0062 (3.3 s)
47
+ 14:03:52 real_full__raw E_N[pc] sq 1.0515 (LB 225.559 UB 317.086 Dif 321.795) l2 1.0959 (6.2 s)
48
+ 14:04:15 real_full__raw E_N[all] sq 1.1762 (LB 138.120 UB 201.885 Dif 213.120) l2 1.1777 (22.4 s)
49
+ 14:04:15 real_full__raw done in 46 s
50
+ 14:04:17 scratch_full__raw: scratch_full__raw.npz sha 96d7b271d204 (receipt verified), 25500 scored cells, 2550 in the P/C subsample (same rows as the scorer)
51
+ 14:04:21 scratch_full__raw [R1 raw] P/C k10 0.9898/0.8620 k5 0.9624/0.7396 k3 0.9110/0.6271 | AUC knn 0.886 rf 0.943 | 1-NN 0.786 | MMD2 0.0185 (3.6 s)
52
+ 14:04:25 scratch_full__raw [R1 dm] P/C k10 0.9863/0.9435 k5 0.9435/0.8518 k3 0.8882/0.7408 | AUC knn 0.821 rf 0.884 | 1-NN 0.725 | MMD2 0.0082 (3.6 s)
53
+ 14:04:28 scratch_full__raw [R2 raw] AUC knn 0.895 rf 0.911 | 1-NN 0.793 | MMD2 0.0179 (3.2 s)
54
+ 14:04:32 scratch_full__raw [R2 dm] AUC knn 0.823 rf 0.878 | 1-NN 0.733 | MMD2 0.0087 (3.2 s)
55
+ 14:04:38 scratch_full__raw E_N[pc] sq 0.8511 (LB 214.216 UB 324.598 Dif 308.157) l2 0.8847 (6.2 s)
56
+ 14:05:00 scratch_full__raw E_N[all] sq 1.0772 (LB 135.639 UB 202.411 Dif 207.565) l2 1.0820 (21.7 s)
57
+ 14:05:00 scratch_full__raw done in 45 s
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+ 14:05:03 lora_recipe__raw: lora_recipe__raw.npz sha ec9b3d0f672e (receipt verified), 25500 scored cells, 2550 in the P/C subsample (same rows as the scorer)
59
+ 14:05:07 lora_recipe__raw [R1 raw] P/C k10 0.9875/0.8663 k5 0.9506/0.7439 k3 0.8867/0.6349 | AUC knn 0.887 rf 0.945 | 1-NN 0.788 | MMD2 0.0165 (3.8 s)
60
+ 14:05:11 lora_recipe__raw [R1 dm] P/C k10 0.9745/0.9541 k5 0.9365/0.8671 k3 0.8765/0.7737 | AUC knn 0.819 rf 0.875 | 1-NN 0.714 | MMD2 0.0076 (3.8 s)
61
+ 14:05:14 lora_recipe__raw [R2 raw] AUC knn 0.889 rf 0.899 | 1-NN 0.795 | MMD2 0.0151 (3.3 s)
62
+ 14:05:18 lora_recipe__raw [R2 dm] AUC knn 0.813 rf 0.850 | 1-NN 0.726 | MMD2 0.0075 (3.3 s)
63
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+ }
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+ ],
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+ "inference_locations": [
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+ {
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+ "artifact_role": "inference_output",
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+ "checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/scratch_full/checkpoint_ft.pt",
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+ "checkpoint_host": "server_2",
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+ "checkpoint_sha256": "de6a5f0feac4d56bb60bdda0581f9e36b6737b25c8edb2f8390b0e76dfd3a093",
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+ "cohort": "ye2026_sepsis",
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+ "condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ye2026_sepsis/fold0/test_raw.npz",
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+ "condition_sha256": "42353cb2aa66df54d088cb3ca4c3e0d26fccc5cba9cb1fc7df336b254207c679",
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+ "experiment": "paired_finetune_intradataset_20260927/no_pretraining_ablation_20261005",
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+ "host": "server_2",
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+ "init": "random",
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+ "move_marker_server_1": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold0/scratch_full__raw.moved",
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+ "output_sha256": "96d7b271d2043543d0d8aa0bb8b6b0d6df60c855aedb8a973a98195eac5e4342",
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+ "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold0/scratch_full__raw.npz",
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+ "receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold0/scratch_full__raw.log",
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+ "seed": 20260927,
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+ "sha256": "96d7b271d2043543d0d8aa0bb8b6b0d6df60c855aedb8a973a98195eac5e4342",
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+ "state": "completed",
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+ "steps": 50
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+ },
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+ {
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+ "artifact_role": "inference_output",
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+ "checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/scratch_n5/checkpoint_ft.pt",
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+ "checkpoint_host": "server_2",
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+ "checkpoint_sha256": "11665f81339df56bbcdd85ab6bd5c0d032f66df8d320bd56c20db98b7c384427",
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+ "cohort": "ye2026_sepsis",
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+ "condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ye2026_sepsis/fold0/test_raw.npz",
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+ "condition_sha256": "42353cb2aa66df54d088cb3ca4c3e0d26fccc5cba9cb1fc7df336b254207c679",
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+ "experiment": "paired_finetune_intradataset_20260927/no_pretraining_ablation_20261005",
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+ "host": "server_2",
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+ "init": "random",
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+ "move_marker_server_1": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold0/scratch_n5__raw.moved",
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+ "output_sha256": "80c0222cf055b0890f405f39525b0642e521b19018c9d43ce677255e5614cb10",
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+ "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold0/scratch_n5__raw.npz",
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+ "receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold0/scratch_n5__raw.log",
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+ "seed": 20260927,
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+ "sha256": "80c0222cf055b0890f405f39525b0642e521b19018c9d43ce677255e5614cb10",
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+ "state": "completed",
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+ "steps": 50
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+ },
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+ {
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+ "artifact_role": "inference_output",
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+ "checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/scratch_recipe/checkpoint_ft.pt",
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+ "checkpoint_host": "server_2",
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+ "checkpoint_sha256": "ec6af76e986f2849ebdb24c67e80d81c342e5929805c9b39f0ea502dc701bede",
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+ "cohort": "ye2026_sepsis",
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+ "condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ye2026_sepsis/fold0/test_raw.npz",
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+ "condition_sha256": "42353cb2aa66df54d088cb3ca4c3e0d26fccc5cba9cb1fc7df336b254207c679",
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+ "experiment": "paired_finetune_intradataset_20260927/no_pretraining_ablation_20261005",
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+ "host": "server_2",
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+ "init": "random",
572
+ "move_marker_server_1": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold0/scratch_recipe__raw.moved",
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+ "output_sha256": "c3eb533e26c970fcdb2fe782fffd5c6901972426b42cbc3e00f5b1115d307ebd",
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+ "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold0/scratch_recipe__raw.npz",
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+ "receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold0/scratch_recipe__raw.log",
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+ "seed": 20260927,
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+ "sha256": "c3eb533e26c970fcdb2fe782fffd5c6901972426b42cbc3e00f5b1115d307ebd",
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+ "state": "completed",
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+ "steps": 50
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+ }
581
+ ],
582
+ "project_id": "pbisc-diffusion",
583
+ "summary": "No-pretraining ablation, sepsis fold 0 (2026-10-05, user-approved): same architecture with every denoiser weight randomly initialised (ft_sdd_aug.py --init random), full training at lr 2e-4 up to 100k steps on 5 pairs, 58 pairs, 58 pairs + recipes; scored with the 5 pretrained comparison arms in one score_ft.py call + extra_metrics + donor-level + rare states. Realism/diversity (coverage, C2ST, MMD, E_N) equal with or without pretraining; disease logFC r higher from scratch at 58 pairs (0.58 vs 0.49); pretraining wins the donor-specific bulk->composition map (5 pairs: across-donor composition r 0.17 vs 0.70; 58 pairs 0.68 vs 0.77; recipes close it to 0.77) and cost (61-86 min vs ~5 min). One fold only. Checkpoints/NPZs on server_2 (.moved)."
584
+ }