Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec08_pairs_signal.csv +124 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec08_slide_numbers.csv +252 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec09_extra_fivefold.csv +106 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec09_extra_quoted_numbers.csv +15 -0
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec08_pairs_signal.csv
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| 1 |
+
panel,dataset,series,pairs,value,source,y_axis_break
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| 2 |
+
nk_fraction_r,immicro,zero_shot,0,0.49394160824576405,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,False
|
| 3 |
+
nk_fraction_r,immicro,zs_len,0,0.48976906486571425,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/zeroshot_tpm_20261002/pooled/per_donor.csv,False
|
| 4 |
+
nk_fraction_r,immicro,zs_cal_budget,5,0.5019382482162618,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/cal_budget_20261001/pooled arm zs__cal_n5,False
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| 5 |
+
nk_fraction_r,immicro,zs_cal_budget,10,0.5149641511550681,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/cal_budget_20261001/pooled arm zs__cal_n10,False
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| 6 |
+
nk_fraction_r,immicro,zs_cal_budget,20,0.5251026675518605,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/cal_budget_20261001/pooled arm zs__cal_n20,False
|
| 7 |
+
nk_fraction_r,immicro,zs_cal_budget,40,0.4999646152855758,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/cal_budget_20261001/pooled arm zs__cal_n40,False
|
| 8 |
+
nk_fraction_r,immicro,zs_cal_budget,all,0.5003961466692975,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv arm zs__cal (alpha from every training pair of the fold = the rightmost LoRA point's pairs),False
|
| 9 |
+
nk_fraction_r,immicro,scsemi,5,0.26505801664469764,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled arm scsemi_n5__raw,False
|
| 10 |
+
nk_fraction_r,immicro,scsemi,10,0.32997008942342126,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled arm scsemi_n10__raw,False
|
| 11 |
+
nk_fraction_r,immicro,scsemi,20,0.4761866180371444,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled arm scsemi_n20__raw,False
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| 12 |
+
nk_fraction_r,immicro,scsemi,40,0.4937087576279337,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled arm scsemi_n40__raw,False
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| 13 |
+
nk_fraction_r,immicro,scsemi,all,0.42450333083084973,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_cv_20261002/pooled arm scsemi__raw,False
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| 14 |
+
nk_fraction_r,immicro,lora,5,0.19927421883785934,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,False
|
| 15 |
+
nk_fraction_r,immicro,lora,10,0.39716857270640143,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,False
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| 16 |
+
nk_fraction_r,immicro,lora,20,0.5643593920183632,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,False
|
| 17 |
+
nk_fraction_r,immicro,lora,40,0.6993357449065651,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,False
|
| 18 |
+
nk_fraction_r,immicro,lora,all,0.7019256538365702,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,False
|
| 19 |
+
nk_fraction_r,immicro,ref_pseudo,,0.6035440889137252,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,False
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| 20 |
+
other_fraction_r,immicro,T cell,0,0.6043108678294739,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
|
| 21 |
+
other_fraction_r,immicro,T cell,0+cal,0.6726477127429659,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
|
| 22 |
+
other_fraction_r,immicro,T cell,5,0.6315475665249287,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
|
| 23 |
+
other_fraction_r,immicro,T cell,10,0.5957704370194421,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
|
| 24 |
+
other_fraction_r,immicro,T cell,20,0.6410965355365116,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
|
| 25 |
+
other_fraction_r,immicro,T cell,40,0.6991147198279736,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
|
| 26 |
+
other_fraction_r,immicro,T cell,all,0.7406200271862474,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
|
| 27 |
+
other_fraction_r,immicro,B cell,0,0.5279396755398866,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
|
| 28 |
+
other_fraction_r,immicro,B cell,0+cal,0.7220915715108555,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
|
| 29 |
+
other_fraction_r,immicro,B cell,5,0.729131301837333,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
|
| 30 |
+
other_fraction_r,immicro,B cell,10,0.7212947581946606,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
|
| 31 |
+
other_fraction_r,immicro,B cell,20,0.7429431917092265,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
|
| 32 |
+
other_fraction_r,immicro,B cell,40,0.7669770248551714,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
|
| 33 |
+
other_fraction_r,immicro,B cell,all,0.7522272982606778,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
|
| 34 |
+
other_fraction_r,immicro,Monocyte,0,0.8368172275114304,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
|
| 35 |
+
other_fraction_r,immicro,Monocyte,0+cal,0.8459417571453376,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
|
| 36 |
+
other_fraction_r,immicro,Monocyte,5,0.8134328996487339,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
|
| 37 |
+
other_fraction_r,immicro,Monocyte,10,0.7612668103183707,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
|
| 38 |
+
other_fraction_r,immicro,Monocyte,20,0.7864676702206632,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
|
| 39 |
+
other_fraction_r,immicro,Monocyte,40,0.8072462606251652,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
|
| 40 |
+
other_fraction_r,immicro,Monocyte,all,0.8641118040407296,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv,
|
| 41 |
+
logfc_r,ye2026_sepsis,zero_shot,0,-0.011802666469938328,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv,False
|
| 42 |
+
logfc_r,ye2026_sepsis,zs_len,0,0.10712583647600069,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/zeroshot_tpm_20261002/pooled/contrast.csv,False
|
| 43 |
+
logfc_r,ye2026_sepsis,zs_cal_budget,5,0.07938905362315378,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled arm zs__cal_n5,False
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| 44 |
+
logfc_r,ye2026_sepsis,zs_cal_budget,10,0.09542918105844352,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled arm zs__cal_n10,False
|
| 45 |
+
logfc_r,ye2026_sepsis,zs_cal_budget,20,0.10253144906014951,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled arm zs__cal_n20,False
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| 46 |
+
logfc_r,ye2026_sepsis,zs_cal_budget,40,0.11880840796993535,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled arm zs__cal_n40,False
|
| 47 |
+
logfc_r,ye2026_sepsis,zs_cal_budget,all,0.12267970089558217,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv arm zs__cal (alpha from every training pair of the fold = the rightmost LoRA point's pairs),False
|
| 48 |
+
logfc_r,ye2026_sepsis,scsemi,5,0.527445303613856,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/pooled arm scsemi_n5__raw,False
|
| 49 |
+
logfc_r,ye2026_sepsis,scsemi,10,0.5611247269187516,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/pooled arm scsemi_n10__raw,False
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| 50 |
+
logfc_r,ye2026_sepsis,scsemi,20,0.5820250695181645,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/pooled arm scsemi_n20__raw,False
|
| 51 |
+
logfc_r,ye2026_sepsis,scsemi,40,0.5209518401889095,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/pooled arm scsemi_n40__raw,False
|
| 52 |
+
logfc_r,ye2026_sepsis,scsemi,all,0.43526410070392063,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_cv_20261002/pooled arm scsemi__raw,False
|
| 53 |
+
logfc_r,ye2026_sepsis,lora,5,0.29404452074006043,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv,False
|
| 54 |
+
logfc_r,ye2026_sepsis,lora,10,0.4222959020688887,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv,False
|
| 55 |
+
logfc_r,ye2026_sepsis,lora,20,0.3671933060907342,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv,False
|
| 56 |
+
logfc_r,ye2026_sepsis,lora,40,0.47588059575028696,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv,False
|
| 57 |
+
logfc_r,ye2026_sepsis,lora,all,0.5267612711229187,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv,False
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| 58 |
+
logfc_r,ye2026_sepsis,ref_pseudo,,0.4675925305606039,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv,False
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| 59 |
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logfc_r,ye2026_sepsis,ref_broadcast,,0.31594581626202856,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv,False
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| 60 |
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top50_deg,ye2026_sepsis,zero_shot,0,9.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,False
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| 61 |
+
top50_deg,ye2026_sepsis,zs_len,0,11.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/zeroshot_tpm_20261002/pooled/contrast.csv,False
|
| 62 |
+
top50_deg,ye2026_sepsis,zs_cal_budget,5,12.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled arm zs__cal_n5,False
|
| 63 |
+
top50_deg,ye2026_sepsis,zs_cal_budget,10,10.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled arm zs__cal_n10,False
|
| 64 |
+
top50_deg,ye2026_sepsis,zs_cal_budget,20,7.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled arm zs__cal_n20,False
|
| 65 |
+
top50_deg,ye2026_sepsis,zs_cal_budget,40,7.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled arm zs__cal_n40,False
|
| 66 |
+
top50_deg,ye2026_sepsis,zs_cal_budget,all,11.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv arm zs__cal (alpha from every training pair of the fold = the rightmost LoRA point's pairs),False
|
| 67 |
+
top50_deg,ye2026_sepsis,scsemi,5,2.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/pooled arm scsemi_n5__raw,False
|
| 68 |
+
top50_deg,ye2026_sepsis,scsemi,10,3.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/pooled arm scsemi_n10__raw,False
|
| 69 |
+
top50_deg,ye2026_sepsis,scsemi,20,2.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/pooled arm scsemi_n20__raw,False
|
| 70 |
+
top50_deg,ye2026_sepsis,scsemi,40,6.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/pooled arm scsemi_n40__raw,False
|
| 71 |
+
top50_deg,ye2026_sepsis,scsemi,all,6.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_cv_20261002/pooled arm scsemi__raw,False
|
| 72 |
+
top50_deg,ye2026_sepsis,lora,5,5.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,False
|
| 73 |
+
top50_deg,ye2026_sepsis,lora,10,8.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,False
|
| 74 |
+
top50_deg,ye2026_sepsis,lora,20,18.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,False
|
| 75 |
+
top50_deg,ye2026_sepsis,lora,40,22.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,False
|
| 76 |
+
top50_deg,ye2026_sepsis,lora,all,23.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,False
|
| 77 |
+
top50_deg,ye2026_sepsis,ref_pseudo,,22.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,False
|
| 78 |
+
top50_deg,ye2026_sepsis,ref_broadcast,,21.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,False
|
| 79 |
+
top50_deg_by_type,ye2026_sepsis,T cell,0,3.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 80 |
+
top50_deg_by_type,ye2026_sepsis,T cell,0+cal,5.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 81 |
+
top50_deg_by_type,ye2026_sepsis,T cell,5,4.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 82 |
+
top50_deg_by_type,ye2026_sepsis,T cell,10,3.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 83 |
+
top50_deg_by_type,ye2026_sepsis,T cell,20,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 84 |
+
top50_deg_by_type,ye2026_sepsis,T cell,40,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 85 |
+
top50_deg_by_type,ye2026_sepsis,T cell,all,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 86 |
+
top50_deg_by_type,ye2026_sepsis,T cell,pseudo,11.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 87 |
+
top50_deg_by_type,ye2026_sepsis,T cell,broadcast,3.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 88 |
+
top50_deg_by_type,ye2026_sepsis,B cell,0,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 89 |
+
top50_deg_by_type,ye2026_sepsis,B cell,0+cal,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 90 |
+
top50_deg_by_type,ye2026_sepsis,B cell,5,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 91 |
+
top50_deg_by_type,ye2026_sepsis,B cell,10,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 92 |
+
top50_deg_by_type,ye2026_sepsis,B cell,20,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 93 |
+
top50_deg_by_type,ye2026_sepsis,B cell,40,3.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 94 |
+
top50_deg_by_type,ye2026_sepsis,B cell,all,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 95 |
+
top50_deg_by_type,ye2026_sepsis,B cell,pseudo,5.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 96 |
+
top50_deg_by_type,ye2026_sepsis,B cell,broadcast,2.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 97 |
+
top50_deg_by_type,ye2026_sepsis,Monocyte,0,4.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 98 |
+
top50_deg_by_type,ye2026_sepsis,Monocyte,0+cal,4.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 99 |
+
top50_deg_by_type,ye2026_sepsis,Monocyte,5,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 100 |
+
top50_deg_by_type,ye2026_sepsis,Monocyte,10,4.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 101 |
+
top50_deg_by_type,ye2026_sepsis,Monocyte,20,13.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 102 |
+
top50_deg_by_type,ye2026_sepsis,Monocyte,40,12.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 103 |
+
top50_deg_by_type,ye2026_sepsis,Monocyte,all,19.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 104 |
+
top50_deg_by_type,ye2026_sepsis,Monocyte,pseudo,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 105 |
+
top50_deg_by_type,ye2026_sepsis,Monocyte,broadcast,13.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 106 |
+
top50_deg_by_type,ye2026_sepsis,NK cell,0,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 107 |
+
top50_deg_by_type,ye2026_sepsis,NK cell,0+cal,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 108 |
+
top50_deg_by_type,ye2026_sepsis,NK cell,5,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 109 |
+
top50_deg_by_type,ye2026_sepsis,NK cell,10,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 110 |
+
top50_deg_by_type,ye2026_sepsis,NK cell,20,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 111 |
+
top50_deg_by_type,ye2026_sepsis,NK cell,40,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 112 |
+
top50_deg_by_type,ye2026_sepsis,NK cell,all,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 113 |
+
top50_deg_by_type,ye2026_sepsis,NK cell,pseudo,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 114 |
+
top50_deg_by_type,ye2026_sepsis,NK cell,broadcast,2.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 115 |
+
top50_deg_by_type,ye2026_sepsis,DC,0,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 116 |
+
top50_deg_by_type,ye2026_sepsis,DC,0+cal,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 117 |
+
top50_deg_by_type,ye2026_sepsis,DC,5,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 118 |
+
top50_deg_by_type,ye2026_sepsis,DC,10,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 119 |
+
top50_deg_by_type,ye2026_sepsis,DC,20,4.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 120 |
+
top50_deg_by_type,ye2026_sepsis,DC,40,7.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 121 |
+
top50_deg_by_type,ye2026_sepsis,DC,all,2.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 122 |
+
top50_deg_by_type,ye2026_sepsis,DC,pseudo,4.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 123 |
+
top50_deg_by_type,ye2026_sepsis,DC,broadcast,1.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv,
|
| 124 |
+
meta,ye2026_sepsis,n_case_vs_control,,61 vs 21,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json,
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec08_slide_numbers.csv
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| 1 |
+
key,value,source
|
| 2 |
+
immicro.coverage.zero_shot,0.192,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json
|
| 3 |
+
immicro.coverage.zs_cal,0.527,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json
|
| 4 |
+
immicro.coverage.zs_len,0.505,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/zeroshot_tpm_20261002/pooled/summary.json
|
| 5 |
+
immicro.coverage.lora_n5,0.839,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json
|
| 6 |
+
immicro.coverage.lora_all,0.784,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json
|
| 7 |
+
immicro.coverage.zs_pseudo,0.524,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json
|
| 8 |
+
immicro.comp_l1.zero_shot,0.455,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json
|
| 9 |
+
immicro.comp_l1.zs_cal,0.199,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json
|
| 10 |
+
immicro.comp_l1.zs_len,0.42,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/zeroshot_tpm_20261002/pooled/summary.json
|
| 11 |
+
immicro.comp_l1.lora_n5,0.171,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json
|
| 12 |
+
immicro.comp_l1.lora_all,0.162,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json
|
| 13 |
+
immicro.comp_l1.zs_pseudo,0.204,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json
|
| 14 |
+
immicro.comp_l1.null,0.161,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json
|
| 15 |
+
immicro.comp_l1.lora_5_minus_zero_shot.mean,-0.283,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 16 |
+
immicro.comp_l1.lora_5_minus_zero_shot.frac_donors_lower,0.94,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 17 |
+
immicro.comp_l1.lora_5_vs_zero_shot.wilcoxon_p,7.2e-18,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 18 |
+
immicro.comp_l1.lora_10_minus_zero_shot.mean,-0.267,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 19 |
+
immicro.comp_l1.lora_10_minus_zero_shot.frac_donors_lower,0.92,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 20 |
+
immicro.comp_l1.lora_10_vs_zero_shot.wilcoxon_p,5.8e-18,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 21 |
+
immicro.comp_l1.lora_20_minus_zero_shot.mean,-0.283,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 22 |
+
immicro.comp_l1.lora_20_minus_zero_shot.frac_donors_lower,0.94,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 23 |
+
immicro.comp_l1.lora_20_vs_zero_shot.wilcoxon_p,4.2e-18,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 24 |
+
immicro.comp_l1.lora_40_minus_zero_shot.mean,-0.283,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 25 |
+
immicro.comp_l1.lora_40_minus_zero_shot.frac_donors_lower,0.95,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 26 |
+
immicro.comp_l1.lora_40_vs_zero_shot.wilcoxon_p,1.2e-18,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 27 |
+
immicro.comp_l1.lora_all_minus_zero_shot.mean,-0.293,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 28 |
+
immicro.comp_l1.lora_all_minus_zero_shot.frac_donors_lower,0.96,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 29 |
+
immicro.comp_l1.lora_all_vs_zero_shot.wilcoxon_p,1.7e-18,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 30 |
+
immicro.comp_l1.lora_5_minus_zs_cal.mean,-0.027,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 31 |
+
immicro.comp_l1.lora_5_minus_zs_cal.frac_donors_lower,0.66,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 32 |
+
immicro.comp_l1.lora_5_vs_zs_cal.wilcoxon_p,2.3e-05,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 33 |
+
immicro.comp_l1.lora_10_minus_zs_cal.mean,-0.011,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 34 |
+
immicro.comp_l1.lora_10_minus_zs_cal.frac_donors_lower,0.6,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 35 |
+
immicro.comp_l1.lora_10_vs_zs_cal.wilcoxon_p,0.057,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 36 |
+
immicro.comp_l1.lora_20_minus_zs_cal.mean,-0.026,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 37 |
+
immicro.comp_l1.lora_20_minus_zs_cal.frac_donors_lower,0.67,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 38 |
+
immicro.comp_l1.lora_20_vs_zs_cal.wilcoxon_p,4e-05,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 39 |
+
immicro.comp_l1.lora_40_minus_zs_cal.mean,-0.027,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 40 |
+
immicro.comp_l1.lora_40_minus_zs_cal.frac_donors_lower,0.68,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 41 |
+
immicro.comp_l1.lora_40_vs_zs_cal.wilcoxon_p,0.00011,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 42 |
+
immicro.comp_l1.lora_all_minus_zs_cal.mean,-0.037,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 43 |
+
immicro.comp_l1.lora_all_minus_zs_cal.frac_donors_lower,0.69,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 44 |
+
immicro.comp_l1.lora_all_vs_zs_cal.wilcoxon_p,1.9e-07,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 45 |
+
immicro.comp_l1.zs_cal_minus_zero_shot.mean,-0.256,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 46 |
+
immicro.comp_l1.zs_cal_vs_zero_shot.wilcoxon_p,9.5e-17,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 47 |
+
immicro.coverage.lora_5_minus_zs_cal.mean,0.312,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 48 |
+
immicro.coverage.lora_5_minus_zs_cal.frac_donors_lower,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 49 |
+
immicro.coverage.lora_5_vs_zs_cal.wilcoxon_p,2.7e-19,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 50 |
+
immicro.coverage.lora_10_minus_zs_cal.mean,0.258,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 51 |
+
immicro.coverage.lora_10_minus_zs_cal.frac_donors_lower,0.01,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 52 |
+
immicro.coverage.lora_10_vs_zs_cal.wilcoxon_p,2.9e-19,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 53 |
+
immicro.coverage.lora_20_minus_zs_cal.mean,0.228,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 54 |
+
immicro.coverage.lora_20_minus_zs_cal.frac_donors_lower,0.03,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 55 |
+
immicro.coverage.lora_20_vs_zs_cal.wilcoxon_p,5.2e-19,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 56 |
+
immicro.coverage.lora_40_minus_zs_cal.mean,0.251,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 57 |
+
immicro.coverage.lora_40_minus_zs_cal.frac_donors_lower,0.03,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 58 |
+
immicro.coverage.lora_40_vs_zs_cal.wilcoxon_p,5.9e-19,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 59 |
+
immicro.coverage.lora_all_minus_zs_cal.mean,0.257,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 60 |
+
immicro.coverage.lora_all_minus_zs_cal.frac_donors_lower,0.04,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 61 |
+
immicro.coverage.lora_all_vs_zs_cal.wilcoxon_p,7.3e-19,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 62 |
+
immicro.coverage.zs_cal_minus_zero_shot.mean,0.335,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 63 |
+
immicro.coverage.zs_cal_vs_zero_shot.wilcoxon_p,2.7e-19,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 64 |
+
immicro.cal_alpha_fit_pairs,85–86,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/immicro/PREPARE.json fold_sizes train+inner_val; tools/prepare_dataset.py fit = fold != f
|
| 65 |
+
immicro.fewshot_n5.coverage.zs_cal_same5,0.535,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/fewshot_n5/aggregate.json
|
| 66 |
+
immicro.fewshot_n5.coverage.lora5_fixed3k,0.792,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/fewshot_n5/aggregate.json
|
| 67 |
+
immicro.n_scored_donors,107,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json
|
| 68 |
+
immicro.selected_step.lora_n5.range,2750–5000,RUN.json: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold0/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold1/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold2/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold3/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold4/lora_n5/RUN.json
|
| 69 |
+
immicro.n_train.all,78–79,RUN.json: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold0/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold1/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold2/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold3/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold4/real_lora/RUN.json
|
| 70 |
+
immicro.n_inner_val,7,"RUN.json inner_val_rows (all LoRA arms, 5 folds)"
|
| 71 |
+
immicro.folds_cap_limited.lora_n5,0/5,RUN.json steps_run == max_steps and steps_run - selected_step < patience*eval_every: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold0/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold1/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold2/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold3/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold4/lora_n5/RUN.json
|
| 72 |
+
immicro.folds_cap_limited.lora_n10,1/5,RUN.json steps_run == max_steps and steps_run - selected_step < patience*eval_every: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold0/lora_n10/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold1/lora_n10/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold2/lora_n10/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold3/lora_n10/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold4/lora_n10/RUN.json
|
| 73 |
+
immicro.folds_cap_limited.lora_n20,4/5,RUN.json steps_run == max_steps and steps_run - selected_step < patience*eval_every: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold0/lora_n20/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold1/lora_n20/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold2/lora_n20/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold3/lora_n20/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold4/lora_n20/RUN.json
|
| 74 |
+
immicro.folds_cap_limited.lora_n40,5/5,RUN.json steps_run == max_steps and steps_run - selected_step < patience*eval_every: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold0/lora_n40/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold1/lora_n40/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold2/lora_n40/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold3/lora_n40/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold4/lora_n40/RUN.json
|
| 75 |
+
immicro.folds_cap_limited.real_lora,5/5,RUN.json steps_run == max_steps and steps_run - selected_step < patience*eval_every: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold0/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold1/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold2/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold3/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold4/real_lora/RUN.json
|
| 76 |
+
immicro.cap_limited.max_val_loss_drop_frac_last_2k_steps,0.0033,history.json inner_val_loss (drop over last patience window / drop from step 0): /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold0/lora_n20/history.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold0/lora_n40/history.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold0/real_lora/history.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold1/lora_n20/history.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold1/lora_n40/history.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold1/real_lora/history.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold2/lora_n20/history.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold2/lora_n40/history.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold2/real_lora/history.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold3/lora_n20/history.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold3/lora_n40/history.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold3/real_lora/history.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold4/lora_n10/history.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold4/lora_n40/history.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fold4/real_lora/history.json
|
| 77 |
+
ye2026_sepsis.coverage.zero_shot,0.067,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
|
| 78 |
+
ye2026_sepsis.coverage.zs_cal,0.431,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
|
| 79 |
+
ye2026_sepsis.coverage.zs_len,0.399,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/zeroshot_tpm_20261002/pooled/summary.json
|
| 80 |
+
ye2026_sepsis.coverage.lora_n5,0.767,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
|
| 81 |
+
ye2026_sepsis.coverage.lora_all,0.829,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
|
| 82 |
+
ye2026_sepsis.coverage.zs_pseudo,0.48,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
|
| 83 |
+
ye2026_sepsis.comp_l1.zero_shot,0.511,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
|
| 84 |
+
ye2026_sepsis.comp_l1.zs_cal,0.401,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
|
| 85 |
+
ye2026_sepsis.comp_l1.zs_len,0.557,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/zeroshot_tpm_20261002/pooled/summary.json
|
| 86 |
+
ye2026_sepsis.comp_l1.lora_n5,0.428,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
|
| 87 |
+
ye2026_sepsis.comp_l1.lora_all,0.362,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
|
| 88 |
+
ye2026_sepsis.comp_l1.zs_pseudo,0.233,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
|
| 89 |
+
ye2026_sepsis.comp_l1.null,0.515,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
|
| 90 |
+
ye2026_sepsis.comp_l1.lora_5_minus_zero_shot.mean,-0.083,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 91 |
+
ye2026_sepsis.comp_l1.lora_5_minus_zero_shot.frac_donors_lower,0.61,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 92 |
+
ye2026_sepsis.comp_l1.lora_5_vs_zero_shot.wilcoxon_p,0.042,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 93 |
+
ye2026_sepsis.comp_l1.lora_10_minus_zero_shot.mean,-0.121,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 94 |
+
ye2026_sepsis.comp_l1.lora_10_minus_zero_shot.frac_donors_lower,0.6,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 95 |
+
ye2026_sepsis.comp_l1.lora_10_vs_zero_shot.wilcoxon_p,0.0053,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 96 |
+
ye2026_sepsis.comp_l1.lora_20_minus_zero_shot.mean,-0.131,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 97 |
+
ye2026_sepsis.comp_l1.lora_20_minus_zero_shot.frac_donors_lower,0.62,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 98 |
+
ye2026_sepsis.comp_l1.lora_20_vs_zero_shot.wilcoxon_p,0.0012,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 99 |
+
ye2026_sepsis.comp_l1.lora_40_minus_zero_shot.mean,-0.146,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 100 |
+
ye2026_sepsis.comp_l1.lora_40_minus_zero_shot.frac_donors_lower,0.68,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 101 |
+
ye2026_sepsis.comp_l1.lora_40_vs_zero_shot.wilcoxon_p,0.00026,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 102 |
+
ye2026_sepsis.comp_l1.lora_all_minus_zero_shot.mean,-0.149,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 103 |
+
ye2026_sepsis.comp_l1.lora_all_minus_zero_shot.frac_donors_lower,0.67,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 104 |
+
ye2026_sepsis.comp_l1.lora_all_vs_zero_shot.wilcoxon_p,0.00063,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 105 |
+
ye2026_sepsis.comp_l1.lora_5_minus_zs_cal.mean,0.027,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 106 |
+
ye2026_sepsis.comp_l1.lora_5_minus_zs_cal.frac_donors_lower,0.5,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 107 |
+
ye2026_sepsis.comp_l1.lora_5_vs_zs_cal.wilcoxon_p,0.61,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 108 |
+
ye2026_sepsis.comp_l1.lora_10_minus_zs_cal.mean,-0.011,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 109 |
+
ye2026_sepsis.comp_l1.lora_10_minus_zs_cal.frac_donors_lower,0.54,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 110 |
+
ye2026_sepsis.comp_l1.lora_10_vs_zs_cal.wilcoxon_p,0.46,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 111 |
+
ye2026_sepsis.comp_l1.lora_20_minus_zs_cal.mean,-0.02,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 112 |
+
ye2026_sepsis.comp_l1.lora_20_minus_zs_cal.frac_donors_lower,0.62,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 113 |
+
ye2026_sepsis.comp_l1.lora_20_vs_zs_cal.wilcoxon_p,0.2,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 114 |
+
ye2026_sepsis.comp_l1.lora_40_minus_zs_cal.mean,-0.036,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 115 |
+
ye2026_sepsis.comp_l1.lora_40_minus_zs_cal.frac_donors_lower,0.59,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
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| 116 |
+
ye2026_sepsis.comp_l1.lora_40_vs_zs_cal.wilcoxon_p,0.083,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 117 |
+
ye2026_sepsis.comp_l1.lora_all_minus_zs_cal.mean,-0.039,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 118 |
+
ye2026_sepsis.comp_l1.lora_all_minus_zs_cal.frac_donors_lower,0.54,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 119 |
+
ye2026_sepsis.comp_l1.lora_all_vs_zs_cal.wilcoxon_p,0.19,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 120 |
+
ye2026_sepsis.comp_l1.zs_cal_minus_zero_shot.mean,-0.11,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 121 |
+
ye2026_sepsis.comp_l1.zs_cal_vs_zero_shot.wilcoxon_p,0.00014,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 122 |
+
ye2026_sepsis.coverage.lora_5_minus_zs_cal.mean,0.336,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 123 |
+
ye2026_sepsis.coverage.lora_5_minus_zs_cal.frac_donors_lower,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 124 |
+
ye2026_sepsis.coverage.lora_5_vs_zs_cal.wilcoxon_p,3.7e-15,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 125 |
+
ye2026_sepsis.coverage.lora_10_minus_zs_cal.mean,0.355,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 126 |
+
ye2026_sepsis.coverage.lora_10_minus_zs_cal.frac_donors_lower,0.01,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 127 |
+
ye2026_sepsis.coverage.lora_10_vs_zs_cal.wilcoxon_p,3.8e-15,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 128 |
+
ye2026_sepsis.coverage.lora_20_minus_zs_cal.mean,0.376,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 129 |
+
ye2026_sepsis.coverage.lora_20_minus_zs_cal.frac_donors_lower,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 130 |
+
ye2026_sepsis.coverage.lora_20_vs_zs_cal.wilcoxon_p,3.7e-15,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 131 |
+
ye2026_sepsis.coverage.lora_40_minus_zs_cal.mean,0.387,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 132 |
+
ye2026_sepsis.coverage.lora_40_minus_zs_cal.frac_donors_lower,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 133 |
+
ye2026_sepsis.coverage.lora_40_vs_zs_cal.wilcoxon_p,3.7e-15,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 134 |
+
ye2026_sepsis.coverage.lora_all_minus_zs_cal.mean,0.399,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 135 |
+
ye2026_sepsis.coverage.lora_all_minus_zs_cal.frac_donors_lower,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 136 |
+
ye2026_sepsis.coverage.lora_all_vs_zs_cal.wilcoxon_p,3.7e-15,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 137 |
+
ye2026_sepsis.coverage.zs_cal_minus_zero_shot.mean,0.363,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 138 |
+
ye2026_sepsis.coverage.zs_cal_vs_zero_shot.wilcoxon_p,3.7e-15,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/per_donor.csv
|
| 139 |
+
ye2026_sepsis.cal_alpha_fit_pairs,65–66,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ye2026_sepsis/PREPARE.json fold_sizes train+inner_val; tools/prepare_dataset.py fit = fold != f
|
| 140 |
+
ye2026_sepsis.fewshot_n5.coverage.zs_cal_same5,0.428,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/fewshot_n5/aggregate.json
|
| 141 |
+
ye2026_sepsis.fewshot_n5.coverage.lora5_fixed3k,0.694,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/fewshot_n5/aggregate.json
|
| 142 |
+
ye2026_sepsis.n_scored_donors,82,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json
|
| 143 |
+
ye2026_sepsis.selected_step.lora_n5.range,2000–3000,RUN.json: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold2/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold3/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold4/lora_n5/RUN.json
|
| 144 |
+
ye2026_sepsis.n_train.all,58–59,RUN.json: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold2/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold3/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold4/real_lora/RUN.json
|
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+
ye2026_sepsis.n_inner_val,7–8,"RUN.json inner_val_rows (all LoRA arms, 5 folds)"
|
| 146 |
+
ye2026_sepsis.folds_cap_limited.lora_n5,0/5,RUN.json steps_run == max_steps and steps_run - selected_step < patience*eval_every: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold2/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold3/lora_n5/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold4/lora_n5/RUN.json
|
| 147 |
+
ye2026_sepsis.folds_cap_limited.lora_n10,0/5,RUN.json steps_run == max_steps and steps_run - selected_step < patience*eval_every: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/lora_n10/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/lora_n10/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold2/lora_n10/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold3/lora_n10/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold4/lora_n10/RUN.json
|
| 148 |
+
ye2026_sepsis.folds_cap_limited.lora_n20,0/5,RUN.json steps_run == max_steps and steps_run - selected_step < patience*eval_every: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/lora_n20/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/lora_n20/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold2/lora_n20/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold3/lora_n20/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold4/lora_n20/RUN.json
|
| 149 |
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ye2026_sepsis.folds_cap_limited.lora_n40,0/5,RUN.json steps_run == max_steps and steps_run - selected_step < patience*eval_every: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/lora_n40/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/lora_n40/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold2/lora_n40/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold3/lora_n40/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold4/lora_n40/RUN.json
|
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ye2026_sepsis.folds_cap_limited.real_lora,0/5,RUN.json steps_run == max_steps and steps_run - selected_step < patience*eval_every: /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold0/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold2/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold3/real_lora/RUN.json;/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold4/real_lora/RUN.json
|
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immicro.nk_fraction_r.zero_shot,0.49,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 152 |
+
sepsis.logfc_r.zero_shot,-0.01,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv
|
| 153 |
+
sepsis.top50_deg.zero_shot,9,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
|
| 154 |
+
immicro.nk_fraction_r.zs_cal,0.5,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 155 |
+
sepsis.logfc_r.zs_cal,0.12,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv
|
| 156 |
+
sepsis.top50_deg.zs_cal,11,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
|
| 157 |
+
immicro.nk_fraction_r.5,0.2,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 158 |
+
sepsis.logfc_r.5,0.29,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv
|
| 159 |
+
sepsis.top50_deg.5,5,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
|
| 160 |
+
immicro.nk_fraction_r.10,0.4,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 161 |
+
sepsis.logfc_r.10,0.42,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv
|
| 162 |
+
sepsis.top50_deg.10,8,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
|
| 163 |
+
immicro.nk_fraction_r.20,0.56,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 164 |
+
sepsis.logfc_r.20,0.37,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv
|
| 165 |
+
sepsis.top50_deg.20,18,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
|
| 166 |
+
immicro.nk_fraction_r.40,0.7,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 167 |
+
sepsis.logfc_r.40,0.48,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv
|
| 168 |
+
sepsis.top50_deg.40,22,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
|
| 169 |
+
immicro.nk_fraction_r.all,0.7,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 170 |
+
sepsis.logfc_r.all,0.53,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv
|
| 171 |
+
sepsis.top50_deg.all,23,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled_deg/contrast.csv
|
| 172 |
+
immicro.nk_fraction_r.pseudo,0.6,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/per_donor.csv
|
| 173 |
+
sepsis.logfc_r.pseudo,0.47,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/contrast.csv
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| 233 |
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immicro.comp_l1.scsemi_5,0.218,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled/summary.json
|
| 234 |
+
immicro.coverage.scsemi_10,0.038,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled/summary.json
|
| 235 |
+
immicro.comp_l1.scsemi_10,0.227,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled/summary.json
|
| 236 |
+
immicro.coverage.scsemi_20,0.037,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled/summary.json
|
| 237 |
+
immicro.comp_l1.scsemi_20,0.223,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled/summary.json
|
| 238 |
+
immicro.coverage.scsemi_40,0.038,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled/summary.json
|
| 239 |
+
immicro.comp_l1.scsemi_40,0.221,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_budget_20261002/pooled/summary.json
|
| 240 |
+
immicro.coverage.scsemi_all,0.038,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_cv_20261002/pooled/summary.json
|
| 241 |
+
immicro.comp_l1.scsemi_all,0.217,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/scsemi_cv_20261002/pooled/summary.json
|
| 242 |
+
ye2026_sepsis.scsemi.pairs_drawn,"5,10,20,40,all",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis
|
| 243 |
+
ye2026_sepsis.coverage.scsemi_5,0.097,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/pooled/summary.json
|
| 244 |
+
ye2026_sepsis.comp_l1.scsemi_5,0.521,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/pooled/summary.json
|
| 245 |
+
ye2026_sepsis.coverage.scsemi_10,0.103,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/pooled/summary.json
|
| 246 |
+
ye2026_sepsis.comp_l1.scsemi_10,0.536,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/pooled/summary.json
|
| 247 |
+
ye2026_sepsis.coverage.scsemi_20,0.101,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/pooled/summary.json
|
| 248 |
+
ye2026_sepsis.comp_l1.scsemi_20,0.532,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/pooled/summary.json
|
| 249 |
+
ye2026_sepsis.coverage.scsemi_40,0.096,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/pooled/summary.json
|
| 250 |
+
ye2026_sepsis.comp_l1.scsemi_40,0.516,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/pooled/summary.json
|
| 251 |
+
ye2026_sepsis.coverage.scsemi_all,0.096,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_cv_20261002/pooled/summary.json
|
| 252 |
+
ye2026_sepsis.comp_l1.scsemi_all,0.502,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_cv_20261002/pooled/summary.json
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec09_extra_fivefold.csv
ADDED
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| 1 |
+
figure,dataset,metric,series,value,source
|
| 2 |
+
sec09_extra_fivefold,immicro,c2st_knn_auc,zs_raw,0.99636,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 3 |
+
sec09_extra_fivefold,immicro,c2st_knn_auc,zs_cal,0.972808,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 4 |
+
sec09_extra_fivefold,immicro,c2st_knn_auc,sconly_cal,0.952425,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 5 |
+
sec09_extra_fivefold,immicro,c2st_knn_auc,scsemi_all,0.998382,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 6 |
+
sec09_extra_fivefold,immicro,c2st_knn_auc,lora,0.940942,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 7 |
+
sec09_extra_fivefold,immicro,c2st_knn_auc,ref_control,0.504852,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 8 |
+
sec09_extra_fivefold,immicro,c2st_knn_auc,ref_pseudo,0.967117,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 9 |
+
sec09_extra_fivefold,ye2026_sepsis,c2st_knn_auc,zs_raw,0.997764,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 10 |
+
sec09_extra_fivefold,ye2026_sepsis,c2st_knn_auc,zs_cal,0.98362,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 11 |
+
sec09_extra_fivefold,ye2026_sepsis,c2st_knn_auc,sconly_cal,0.901007,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 12 |
+
sec09_extra_fivefold,ye2026_sepsis,c2st_knn_auc,scsemi_all,0.997222,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 13 |
+
sec09_extra_fivefold,ye2026_sepsis,c2st_knn_auc,lora,0.886072,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 14 |
+
sec09_extra_fivefold,ye2026_sepsis,c2st_knn_auc,ref_control,0.505678,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 15 |
+
sec09_extra_fivefold,ye2026_sepsis,c2st_knn_auc,ref_pseudo,0.980367,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 16 |
+
sec09_extra_fivefold,imperial_eskd,c2st_knn_auc,zs_raw,0.995133,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 17 |
+
sec09_extra_fivefold,imperial_eskd,c2st_knn_auc,zs_cal,0.961341,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 18 |
+
sec09_extra_fivefold,imperial_eskd,c2st_knn_auc,sconly_cal,0.902439,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 19 |
+
sec09_extra_fivefold,imperial_eskd,c2st_knn_auc,scsemi_all,,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 20 |
+
sec09_extra_fivefold,imperial_eskd,c2st_knn_auc,lora,0.866123,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 21 |
+
sec09_extra_fivefold,imperial_eskd,c2st_knn_auc,ref_control,0.495896,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 22 |
+
sec09_extra_fivefold,imperial_eskd,c2st_knn_auc,ref_pseudo,0.960684,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 23 |
+
sec09_extra_fivefold,giroux2022,c2st_knn_auc,zs_raw,0.995695,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 24 |
+
sec09_extra_fivefold,giroux2022,c2st_knn_auc,zs_cal,0.944696,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 25 |
+
sec09_extra_fivefold,giroux2022,c2st_knn_auc,sconly_cal,0.897799,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 26 |
+
sec09_extra_fivefold,giroux2022,c2st_knn_auc,scsemi_all,0.997493,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 27 |
+
sec09_extra_fivefold,giroux2022,c2st_knn_auc,lora,0.880883,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 28 |
+
sec09_extra_fivefold,giroux2022,c2st_knn_auc,ref_control,0.501095,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 29 |
+
sec09_extra_fivefold,giroux2022,c2st_knn_auc,ref_pseudo,0.930728,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 30 |
+
sec09_extra_fivefold,ji2025_chili,c2st_knn_auc,zs_raw,0.999152,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 31 |
+
sec09_extra_fivefold,ji2025_chili,c2st_knn_auc,zs_cal,0.998428,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 32 |
+
sec09_extra_fivefold,ji2025_chili,c2st_knn_auc,sconly_cal,0.996612,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 33 |
+
sec09_extra_fivefold,ji2025_chili,c2st_knn_auc,scsemi_all,0.995983,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 34 |
+
sec09_extra_fivefold,ji2025_chili,c2st_knn_auc,lora,0.907904,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 35 |
+
sec09_extra_fivefold,ji2025_chili,c2st_knn_auc,ref_control,0.493668,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 36 |
+
sec09_extra_fivefold,ji2025_chili,c2st_knn_auc,ref_pseudo,0.959523,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 37 |
+
sec09_extra_fivefold,immicro,mmd2_bw1,zs_raw,0.101883,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 38 |
+
sec09_extra_fivefold,immicro,mmd2_bw1,zs_cal,0.0425284,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 39 |
+
sec09_extra_fivefold,immicro,mmd2_bw1,sconly_cal,0.0341944,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 40 |
+
sec09_extra_fivefold,immicro,mmd2_bw1,scsemi_all,0.183671,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 41 |
+
sec09_extra_fivefold,immicro,mmd2_bw1,lora,0.0263951,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 42 |
+
sec09_extra_fivefold,immicro,mmd2_bw1,ref_control,-2.39045e-05,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 43 |
+
sec09_extra_fivefold,immicro,mmd2_bw1,ref_pseudo,0.0433443,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 44 |
+
sec09_extra_fivefold,ye2026_sepsis,mmd2_bw1,zs_raw,0.191967,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 45 |
+
sec09_extra_fivefold,ye2026_sepsis,mmd2_bw1,zs_cal,0.0340047,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 46 |
+
sec09_extra_fivefold,ye2026_sepsis,mmd2_bw1,sconly_cal,0.0122661,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 47 |
+
sec09_extra_fivefold,ye2026_sepsis,mmd2_bw1,scsemi_all,0.1408,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 48 |
+
sec09_extra_fivefold,ye2026_sepsis,mmd2_bw1,lora,0.00894124,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 49 |
+
sec09_extra_fivefold,ye2026_sepsis,mmd2_bw1,ref_control,-3.92778e-05,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 50 |
+
sec09_extra_fivefold,ye2026_sepsis,mmd2_bw1,ref_pseudo,0.0285183,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 51 |
+
sec09_extra_fivefold,imperial_eskd,mmd2_bw1,zs_raw,0.249649,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 52 |
+
sec09_extra_fivefold,imperial_eskd,mmd2_bw1,zs_cal,0.0197338,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 53 |
+
sec09_extra_fivefold,imperial_eskd,mmd2_bw1,sconly_cal,0.0251745,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 54 |
+
sec09_extra_fivefold,imperial_eskd,mmd2_bw1,scsemi_all,,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 55 |
+
sec09_extra_fivefold,imperial_eskd,mmd2_bw1,lora,0.0112339,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 56 |
+
sec09_extra_fivefold,imperial_eskd,mmd2_bw1,ref_control,-1.36052e-05,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 57 |
+
sec09_extra_fivefold,imperial_eskd,mmd2_bw1,ref_pseudo,0.0173657,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 58 |
+
sec09_extra_fivefold,giroux2022,mmd2_bw1,zs_raw,0.123096,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 59 |
+
sec09_extra_fivefold,giroux2022,mmd2_bw1,zs_cal,0.0242793,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 60 |
+
sec09_extra_fivefold,giroux2022,mmd2_bw1,sconly_cal,0.0239624,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 61 |
+
sec09_extra_fivefold,giroux2022,mmd2_bw1,scsemi_all,0.0787724,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 62 |
+
sec09_extra_fivefold,giroux2022,mmd2_bw1,lora,0.0176571,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 63 |
+
sec09_extra_fivefold,giroux2022,mmd2_bw1,ref_control,-1.62813e-05,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 64 |
+
sec09_extra_fivefold,giroux2022,mmd2_bw1,ref_pseudo,0.023533,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 65 |
+
sec09_extra_fivefold,ji2025_chili,mmd2_bw1,zs_raw,0.274556,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 66 |
+
sec09_extra_fivefold,ji2025_chili,mmd2_bw1,zs_cal,0.131745,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 67 |
+
sec09_extra_fivefold,ji2025_chili,mmd2_bw1,sconly_cal,0.153647,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 68 |
+
sec09_extra_fivefold,ji2025_chili,mmd2_bw1,scsemi_all,0.139344,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 69 |
+
sec09_extra_fivefold,ji2025_chili,mmd2_bw1,lora,0.0211982,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 70 |
+
sec09_extra_fivefold,ji2025_chili,mmd2_bw1,ref_control,-1.61647e-05,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 71 |
+
sec09_extra_fivefold,ji2025_chili,mmd2_bw1,ref_pseudo,0.0255162,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 72 |
+
sec09_extra_fivefold,immicro,en_all_sq,zs_raw,4.83231,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 73 |
+
sec09_extra_fivefold,immicro,en_all_sq,zs_cal,2.26259,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 74 |
+
sec09_extra_fivefold,immicro,en_all_sq,sconly_cal,1.76688,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 75 |
+
sec09_extra_fivefold,immicro,en_all_sq,scsemi_all,3.76583,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 76 |
+
sec09_extra_fivefold,immicro,en_all_sq,lora,1.56042,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 77 |
+
sec09_extra_fivefold,immicro,en_all_sq,ref_control,0.383308,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 78 |
+
sec09_extra_fivefold,immicro,en_all_sq,ref_pseudo,1.95039,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 79 |
+
sec09_extra_fivefold,ye2026_sepsis,en_all_sq,zs_raw,5.28846,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 80 |
+
sec09_extra_fivefold,ye2026_sepsis,en_all_sq,zs_cal,1.99447,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 81 |
+
sec09_extra_fivefold,ye2026_sepsis,en_all_sq,sconly_cal,1.40214,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 82 |
+
sec09_extra_fivefold,ye2026_sepsis,en_all_sq,scsemi_all,3.61482,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 83 |
+
sec09_extra_fivefold,ye2026_sepsis,en_all_sq,lora,1.19581,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 84 |
+
sec09_extra_fivefold,ye2026_sepsis,en_all_sq,ref_control,0.110018,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 85 |
+
sec09_extra_fivefold,ye2026_sepsis,en_all_sq,ref_pseudo,1.70081,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 86 |
+
sec09_extra_fivefold,imperial_eskd,en_all_sq,zs_raw,4.05165,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 87 |
+
sec09_extra_fivefold,imperial_eskd,en_all_sq,zs_cal,1.19416,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 88 |
+
sec09_extra_fivefold,imperial_eskd,en_all_sq,sconly_cal,1.40796,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 89 |
+
sec09_extra_fivefold,imperial_eskd,en_all_sq,scsemi_all,,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 90 |
+
sec09_extra_fivefold,imperial_eskd,en_all_sq,lora,1.13349,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 91 |
+
sec09_extra_fivefold,imperial_eskd,en_all_sq,ref_control,0.278838,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 92 |
+
sec09_extra_fivefold,imperial_eskd,en_all_sq,ref_pseudo,1.10201,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 93 |
+
sec09_extra_fivefold,giroux2022,en_all_sq,zs_raw,4.48129,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 94 |
+
sec09_extra_fivefold,giroux2022,en_all_sq,zs_cal,2.25894,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 95 |
+
sec09_extra_fivefold,giroux2022,en_all_sq,sconly_cal,2.23539,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 96 |
+
sec09_extra_fivefold,giroux2022,en_all_sq,scsemi_all,3.33209,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 97 |
+
sec09_extra_fivefold,giroux2022,en_all_sq,lora,1.6992,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 98 |
+
sec09_extra_fivefold,giroux2022,en_all_sq,ref_control,0.277284,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 99 |
+
sec09_extra_fivefold,giroux2022,en_all_sq,ref_pseudo,1.8718,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 100 |
+
sec09_extra_fivefold,ji2025_chili,en_all_sq,zs_raw,10.125,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 101 |
+
sec09_extra_fivefold,ji2025_chili,en_all_sq,zs_cal,7.07606,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 102 |
+
sec09_extra_fivefold,ji2025_chili,en_all_sq,sconly_cal,7.215,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 103 |
+
sec09_extra_fivefold,ji2025_chili,en_all_sq,scsemi_all,4.1316,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 104 |
+
sec09_extra_fivefold,ji2025_chili,en_all_sq,lora,1.94768,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 105 |
+
sec09_extra_fivefold,ji2025_chili,en_all_sq,ref_control,0.0742856,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
| 106 |
+
sec09_extra_fivefold,ji2025_chili,en_all_sq,ref_pseudo,1.68722,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec09_extra_quoted_numbers.csv
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| 1 |
+
slide,value,source
|
| 2 |
+
a,"LoRA-5 best of 4 arms (draws): kNN AUC 25/25, RF AUC 25/25, 1-NN 25/25, MMD² 23/25, E_N 22/25","/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/fewshot_n5/draw<j>/{metrics,en}.csv"
|
| 3 |
+
a,E_N LoRA-5 < scSemi-5 in 25/25 draws; cohort means scSemi-5 vs LoRA-5: ImMicro 3.65 vs 1.55; Sepsis 3.83 vs 1.46; Imperial 2.04 vs 1.28; Giroux 3.79 vs 1.99; Ji 4.27 vs 2.60,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/fewshot_n5/draw<j>/en.csv (cellset all, distance sq)"
|
| 4 |
+
a,"LoRA-5 kNN AUC cohort means: ImMicro 0.943, Sepsis 0.936, Imperial 0.918, Giroux 0.893, Ji 0.955; per draw 0.878–0.975","/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/fewshot_n5/draw<j>/{metrics,en}.csv"
|
| 5 |
+
a,"real vs real: kNN AUC ImMicro 0.502, Sepsis 0.501, Imperial 0.498, Giroux 0.495, Ji 0.491; E_N ImMicro 0.382, Sepsis 0.100, Imperial 0.260, Giroux 0.145, Ji 0.073","/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/fewshot_n5/draw<j>/{metrics,en}.csv"
|
| 6 |
+
a,"LoRA-5 worse than a comparator (draws): vs zero-shot + calibration: Sepsis precision k5 1/5 (0.778 vs 0.752), precision k10 2/5 (0.906 vs 0.899); Imperial MMD² (σ = m) 1/5 (0.0156 vs 0.0218), MMD² (σ sum) 1/5 (0.0443 vs 0.0673), E_N (all cells) 3/5 (1.28 vs 1.22), precision k3 2/5 (0.610 vs 0.598), precision k5 2/5 (0.726 vs 0.719), precision k10 2/5 (0.853 vs 0.845); Giroux MMD² (σ = m) 1/5 (0.0178 vs 0.0257), MMD² (σ sum) 1/5 (0.0584 vs 0.0838), precision k5 1/5 (0.995 vs 0.981), precision k10 1/5 (1.000 vs 0.996)","/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/fewshot_n5/draw<j>/{metrics,en}.csv"
|
| 7 |
+
a,"cross-check: 720 cohort × arm × metric values equal scores_extra/{fewshot,pooled}_headline.csv",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/fewshot_headline.csv; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/pooled_headline.csv
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| 8 |
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b,LoRA first among 5 arms in all 5 cohorts on 12/12 metrics,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
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| 9 |
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b,"Ji E_N: LoRA 1.948; Zero-shot, real bulk 10.125, Zero-shot + calibration 7.076, sc-only fine-tune (+ calibration) 7.215, scSemiProfiler, 5-fold CV (other 4 folds) 4.132","/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
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| 10 |
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b,"LoRA kNN AUC (pooled): ImMicro 0.941, Sepsis 0.886, Imperial 0.866, Giroux 0.881, Ji 0.908","/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/pooled/{metrics,en}.csv"
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| 11 |
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b,"scSemiProfiler, 5-fold CV: ImMicro, Sepsis, Giroux, Ji",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/presentations/2026-09-30--paper-summary--r00/data/sec09_extra_scsemi_status.csv
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| 12 |
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c,"LoRA-5 first on coverage at k = 3, 5 and 10: 25/25 draws","/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/fewshot_n5/draw<j>/{metrics,en}.csv"
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| 13 |
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c,LoRA-5 first on precision (draws) at k = 3/5/10: 23/21/20 of 25,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/fewshot_n5/draw<j>/{metrics,en}.csv"
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| 14 |
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c,"real vs real coverage at k = 3: ImMicro 0.932, Sepsis 0.925, Imperial 0.919, Giroux 0.993, Ji 0.980","/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/fewshot_n5/draw<j>/{metrics,en}.csv"
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| 15 |
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c,every set falls with smaller k (cohort means): True,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/<cohort>/fewshot_n5/draw<j>/{metrics,en}.csv"
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