Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/lora3_raw_s04/rule_C/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+lora3_raw_s04,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.23962640881519023,0.2596080669358038,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.164786533483704,0.054928844494568,0.15301686835166628,0.020472282575687947,0.5940163629937331,0.11296026626872985,0.3662925513616506
+lora3_raw_s04,BD,ifng_response_log2fc_high_vs_other,-1.031635175111826,-0.9642521285446048,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.5842403571273358,0.19474678570911194,0.7243815733189967,-2.1224150021427475,-0.14763822124426784,-1.4807220682747577,-0.5825482819488943
+lora3_raw_s04,BD,ifng_response_c1q_high_minus_other,0.07712227744977217,0.07676937918416321,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.013078856877097608,0.004359618959032536,0.023125442140322222,0.06102164540644306,0.0957963498293066,0.06706897810232866,0.08717557679721567
+lora3_raw_s04,BD,proinflammatory_log2fc_bgcorr_high_vs_other,0.0079336004319813,0.0026816869866495563,0.5555555555555556,0.1111111111111111,0.734375,9,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.12278936296903677,0.04092978765634559,0.047535113547756164,-0.21534914358344787,0.23228369575557165,-0.08645065915658005,0.10231786002054265
+lora3_raw_s04,BD,proinflammatory_log2fc_high_vs_other,-0.8923936729474595,-0.7297521838143745,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.34841843620740753,0.1161394787358025,0.30321325743829375,-1.6906256881218105,-0.563849188154953,-1.1602117911726764,-0.6245755547222427
+lora3_raw_s04,BD,proinflammatory_c1q_high_minus_other,0.005332958099334347,0.003444016672986522,0.6666666666666666,0.3333333333333333,0.30078125,9,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.023628897773287874,0.007876299257762625,0.0253372269935305,-0.044799723805323946,0.037307123129225156,-0.012829820559171768,0.02349573675784046
+lora3_raw_s04,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.2586458930683221,0.193352380786805,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.1348486682703122,0.044949556090104065,0.21489322527307908,0.08978582032654257,0.4689537618741788,0.15499203084895052,0.36229975528769365
+lora3_raw_s04,BD,phagocytosis_antigen_log2fc_high_vs_other,-0.786261316304358,-0.6732146757955997,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.3666381843114596,0.12221272810381988,0.20103065632031925,-1.6350672184957145,-0.44559585342335956,-1.0680843726863491,-0.504438259922367
+lora3_raw_s04,BD,phagocytosis_antigen_c1q_high_minus_other,0.10181996401064142,0.1019905244194787,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.027707117537614366,0.009235705845871455,0.022355373614323826,0.05003292127799586,0.13488644966419328,0.08052238813853255,0.12311753988275029
+lora3_raw_s04,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.1794719307875157,1.1905554760931611,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.614139060139023,0.20471302004634098,0.8849583011479072,0.4729723500166526,2.3018444637589845,0.70740286003052,1.6515410015445113
+lora3_raw_s04,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.4156124295263745,0.42248861885292827,1.0,1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.3188911407688181,0.10629704692293936,0.6590642972480468,0.050223211361138116,0.8072710082912522,0.1704909997620851,0.660733859290664
+lora3_raw_s04,BD,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.6707248157593209,0.6737238352345425,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.10693137366268189,0.035643791220893964,0.07839446257075533,0.48528262121942145,0.8803037937823728,0.5885300858095854,0.7529195457090563
+lora3_raw_s04,HC,ifng_response_log2fc_bgcorr_high_vs_other,0.19256806613897287,0.17793965434021708,0.9,0.8,0.009765625,10,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.21331512623094326,0.06745616582561097,0.14201942470061196,-0.048530717569073616,0.7065214506273567,0.039971617441663526,0.3451645148362822
+lora3_raw_s04,HC,ifng_response_log2fc_high_vs_other,-1.64428432668299,-1.680249632304824,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.4017071368055854,0.12703095046505056,0.5537375003584428,-2.2044636823775496,-0.8991524401049508,-1.9316483011745682,-1.356920352191412
+lora3_raw_s04,HC,ifng_response_c1q_high_minus_other,0.09210148326253288,0.08490092651673994,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.018847526261689153,0.0059601111246776455,0.01763962544720145,0.06498259973517523,0.13234446137798228,0.07861877519077008,0.10558419133429568
+lora3_raw_s04,HC,proinflammatory_log2fc_bgcorr_high_vs_other,0.07848969343214447,0.08513090402327628,0.8,0.6,0.064453125,10,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.11581350636131942,0.03662344639121688,0.14639382570985604,-0.1479905646434146,0.24718360302911738,-0.00435829814810286,0.16133768501239182
+lora3_raw_s04,HC,proinflammatory_log2fc_high_vs_other,-1.1370531710769531,-1.0094080786297777,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.2871405468061829,0.0908018136493725,0.38460970880009815,-1.594332274094094,-0.8171710779481433,-1.342461144218949,-0.9316451979349574
+lora3_raw_s04,HC,proinflammatory_c1q_high_minus_other,0.018687197450106583,0.01940407250324934,0.8,0.6,0.02734375,10,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.019903985024557813,0.006294192719148514,0.021468995663266113,-0.01564137441880667,0.05587036018150765,0.004448744306452463,0.0329256505937607
+lora3_raw_s04,HC,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.4718348014802892,0.4462115985627706,1.0,1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.16119249657043896,0.05097354308914672,0.14357014728599293,0.17414778926791258,0.7353531812711467,0.356524635867973,0.5871449670926054
+lora3_raw_s04,HC,phagocytosis_antigen_log2fc_high_vs_other,-1.060322278136047,-1.0246548191047493,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.3148785173282562,0.09957333010140865,0.4117731368961298,-1.648818719600821,-0.5646001807331938,-1.2855728000486186,-0.8350717562234754
+lora3_raw_s04,HC,phagocytosis_antigen_c1q_high_minus_other,0.13469028123988336,0.1283456920912984,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.03503507391372624,0.011079063155972443,0.044172407216871226,0.09278890200410833,0.20697851640282783,0.10962769916450661,0.15975286331526012
+lora3_raw_s04,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.837393129157686,1.779777886280446,1.0,1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.5787476261139997,0.18301606889357827,0.7544693124405653,1.0707978832186,2.791130816436022,1.4233820180029082,2.2514042403124637
+lora3_raw_s04,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.5690983539756777,0.6105348829063243,0.8,0.6,0.009765625,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.43949819116217176,0.13898153115965475,0.676829950957098,-0.025434398850132448,1.1858708349654956,0.25470028776620274,0.8834964201851525
+lora3_raw_s04,HC,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.8397859083943656,0.8444253748108926,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.07151285110955731,0.022614349147870055,0.10716343700924624,0.7061468710252674,0.9425546081794296,0.7886286964874919,0.8909431203012393

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/lora3_raw_s04/rule_C/sample.csv

@@ -0,0 +1,20 @@
+cohort,sample_id,group,source,n_monocytes,n_c1q_high,c1q_high_fraction,ifng_response_mean_c1q_high,ifng_response_mean_other,ifng_response_c1q_high_minus_other,proinflammatory_mean_c1q_high,proinflammatory_mean_other,proinflammatory_c1q_high_minus_other,phagocytosis_antigen_mean_c1q_high,phagocytosis_antigen_mean_other,phagocytosis_antigen_c1q_high_minus_other,ifng_response_log2fc_bgcorr_high_vs_other,proinflammatory_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,ifng_response_log2fc_high_vs_other,proinflammatory_log2fc_high_vs_other,phagocytosis_antigen_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_mean_c1q_high,phagocytosis_antigen_mhcii_fcgr_mean_other,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,background_log2fc_all_genes
+lora3_raw_s04,BDU1,BD,generated,814,16,0.019656019656019656,0.33628100472230793,0.24635424665593028,0.08992675806637765,0.18387023689220194,0.16008338195800814,0.023786854934193802,0.5467772720072746,0.43558921886395363,0.11118805314332092,0.28981995835763175,0.10441853247462565,0.4689537618741788,1.1905554760931611,-0.7885531019951244,-0.7023019687462914,-0.44559585342335956,0.6450394806465999,1.9301321369368782,1.2194276841582747,0.7107044527786035,-0.6062898399663338
+lora3_raw_s04,BDU2,BD,generated,576,7,0.012152777777777778,0.3208653745410387,0.25984372913459564,0.06102164540644306,0.1567616717910811,0.1597832558169681,-0.003021584025886981,0.5493823014723598,0.4473917770528811,0.1019905244194787,0.020472282575687947,-0.0901240114655001,0.3664256754355097,1.6213168320098355,-1.4853216318623046,-1.1381781788885543,-0.8138753903014498,0.8072710082912522,1.904862222113975,1.2311383868794326,0.6737238352345425,-0.819982740480867
+lora3_raw_s04,BDU3,BD,generated,850,9,0.010588235294117647,0.3804592913340484,0.28912004504888933,0.09133924628515905,0.21451413419879758,0.17720701106957243,0.037307123129225156,0.5730437312987596,0.4418652498461005,0.13117848145265915,0.24513384022378487,0.0026816869866495563,0.3733028415871726,1.4393509039484045,-0.9684118973137472,-0.8549736045793442,-0.6128447339811306,0.7270710293869513,1.9284938568024406,1.2266473950611887,0.7018464617412519,-0.6829677599176026
+lora3_raw_s04,BDV1,BD,generated,943,24,0.02545068928950159,0.3611531640827706,0.29435184815671517,0.06680131592605543,0.1786750834050231,0.1802254554643598,-0.0015503720593366965,0.5240543641128711,0.45499855375056986,0.06905581036230124,0.5940163629937331,0.018083058691019258,0.193352380786805,0.4729723500166526,-0.14763822124426784,-0.563849188154953,-0.46112308420417863,0.050223211361138116,1.7737925776385983,1.2885099564191769,0.48528262121942145,-0.4417686423093013
+lora3_raw_s04,BDV2,BD,generated,741,13,0.017543859649122806,0.355837583435042,0.2790682042508788,0.07676937918416321,0.17436016549711997,0.17065095045444512,0.0037092150426748516,0.583510375910731,0.4486239262465377,0.13488644966419328,0.12846217725469433,0.03653809996403378,0.1670678778093513,0.80326026056709,-0.9642521285446048,-0.7297521838143745,-0.7290283937259489,0.24149323791066443,1.9277342992142867,1.2918826044911311,0.6358516947231556,-0.6014939001059046
+lora3_raw_s04,BDV3,BD,generated,888,7,0.007882882882882882,0.34008486682473427,0.24428851699542767,0.0957963498293066,0.18711550957950626,0.16037425861780774,0.02674125096169852,0.5483358738480931,0.428551192951289,0.11978468089680411,0.25973960669153423,0.23228369575557165,0.36786234825234576,1.584723779300525,-1.4790666774946066,-0.9938751670568508,-1.0495282862030464,0.42248861885292827,1.8417655942304445,1.1219385330037497,0.7198270612266948,-0.8995922203909729
+lora3_raw_s04,BDV4,BD,generated,696,17,0.02442528735632184,0.341170712224489,0.26043069734355845,0.08074001488093058,0.1598941630520133,0.15645014637902677,0.003444016672986522,0.5527809668383642,0.4553516595558839,0.09742930728248028,0.2596080669358038,-0.010997013583722381,0.14809320856372649,0.6997654781526179,-0.75468510417561,-0.690661909618557,-0.6732146757955997,0.06541582270780409,1.8798592808092318,1.2831858498892348,0.596673430919997,-0.5411379893202423
+lora3_raw_s04,BDV5,BD,generated,946,17,0.017970401691331923,0.3516812505443651,0.28261192300635196,0.06906932753801315,0.19165647194596924,0.18927662990219135,0.002379842043777891,0.5358667988183399,0.43503335122180065,0.10083344759653923,0.2814790456063606,-0.006132501351397816,0.08978582032654257,0.5014578332403694,-0.57437281123342,-0.6673251675464004,-0.6560742106087946,0.05702933662418128,1.8516733888291488,1.2193633986213006,0.6323099902078482,-0.5065545063535855
+lora3_raw_s04,BDV6,BD,generated,1016,6,0.005905511811023622,0.30510787024990155,0.24247141031840075,0.0626364599315008,0.11861425989146927,0.16341398369679322,-0.044799723805323946,0.451510961400219,0.40147804012222316,0.05003292127799586,0.07790633869748126,-0.21534914358344787,0.15296912297926668,2.3018444637589845,-2.1224150021427475,-1.6906256881218105,-1.6350672184957145,0.7244801199558509,2.0035357732087973,1.1232319794264245,0.8803037937823728,-1.1103651697621897
+lora3_raw_s04,HC1,HC,generated,908,8,0.00881057268722467,0.3100708303437772,0.22746190351176382,0.08260892683201337,0.15946499456248597,0.15226492234053846,0.007200072221947518,0.5669765272466778,0.41296776237990085,0.15400876486677695,0.19257981703642388,0.03271129929851798,0.6702101220946673,1.6849691353280623,-1.293657944247898,-1.0114057458522723,-0.5646001807331938,0.730026831939243,1.9361241867253285,1.13610866641932,0.8000155203060084,-0.8017420938928738
+lora3_raw_s04,HC10,HC,generated,650,8,0.012307692307692308,0.3730033694108672,0.24065890803288492,0.13234446137798228,0.21240692217494234,0.1565365619934347,0.05587036018150765,0.5437592067726678,0.4125379683498366,0.13122123842283118,0.7065214506273567,0.20344156368602498,0.5160486685156795,1.6998513210414923,-0.8991524401049508,-0.8171710779481433,-0.8100864770833962,0.6941956952154414,1.8405643727469678,1.1344175017217004,0.7061468710252674,-0.826223763314802
+lora3_raw_s04,HC2,HC,generated,676,3,0.004437869822485207,0.3338032534906543,0.2410675065260574,0.09273574696459691,0.16996859100943787,0.15867515372181917,0.011293437287618696,0.5805010475267471,0.41721237459212535,0.1632886729346218,0.1468474958243368,-0.007916829158844252,0.4172702973932254,1.8597044515194001,-2.2044636823775496,-1.594332274094094,-1.648818719600821,-0.025434398850132448,2.0127598077245055,1.1629370365781795,0.849822771146326,-1.1984847245071206
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paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/lora3_raw_s04/rule_D/group.csv

@@ -0,0 +1,25 @@
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paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/lora3_raw_s04/rule_D/sample.csv

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