Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/lora3_raw_s04/rule_A/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+lora3_raw_s04,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.13449173418006097,0.12868784751526077,0.8888888888888888,0.7777777777777778,0.0078125,9,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.11589770612313226,0.03863256870771075,0.13888811424424688,-0.017499683510958007,0.368773281417011,0.04540487098652092,0.22357859737360103
+lora3_raw_s04,BD,ifng_response_log2fc_high_vs_other,-0.41453588828520055,-0.35052555642332606,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.21543460584694465,0.07181153528231489,0.3738269811826678,-0.6893436484919259,-0.1586038717872426,-0.5801335856015786,-0.24893819096882255
+lora3_raw_s04,BD,ifng_response_c1q_high_minus_other,0.0798689589440107,0.08123402694923146,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.011235201552131044,0.0037450671840436813,0.010745932631124111,0.059310114185159024,0.09931599090683077,0.07123281853098856,0.08850509935703285
+lora3_raw_s04,BD,proinflammatory_log2fc_bgcorr_high_vs_other,0.00389818722015166,-0.021741561284959927,0.4444444444444444,-0.1111111111111111,0.91015625,9,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.07829192801756742,0.026097309339189138,0.12777405832714445,-0.08232012545428023,0.14339240222892305,-0.05628231603372079,0.0640786904740241
+lora3_raw_s04,BD,proinflammatory_log2fc_high_vs_other,-0.41272116360267813,-0.4060470761501538,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.15349741432889352,0.05116580477629784,0.2515244060155078,-0.6401663057383952,-0.19388374687714224,-0.53070972099787,-0.29473260620748626
+lora3_raw_s04,BD,proinflammatory_c1q_high_minus_other,0.010425525685127536,0.012061057174314965,0.8888888888888888,0.7777777777777778,0.0078125,9,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.008054993035720864,0.002684997678573621,0.013962922133431532,-2.0250747575029093e-05,0.02063133709224224,0.00423390993532318,0.01661714143493189
+lora3_raw_s04,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.2167993821068199,0.19953351899740931,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.09668612937413157,0.03222870979137719,0.11509023866842094,0.08749053533002132,0.38033826968625156,0.14247984405560912,0.29111892015803065
+lora3_raw_s04,BD,phagocytosis_antigen_log2fc_high_vs_other,-0.2431381092322257,-0.23010684345489654,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.12034619628873558,0.04011539876291186,0.16505549818428933,-0.4348750043437897,-0.11214634040873155,-0.3356443846648645,-0.1506318337995869
+lora3_raw_s04,BD,phagocytosis_antigen_c1q_high_minus_other,0.10576012246469303,0.10736574769445018,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.015724913692464624,0.005241637897488208,0.021800367778561813,0.08381808182883138,0.12958598929907417,0.09367288379784236,0.1178473611315437
+lora3_raw_s04,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,0.9192462852996037,0.8982354062867688,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.2465490884900553,0.0821830294966851,0.2258237968886624,0.570034964767572,1.4051567139387493,0.729731879436642,1.1087606911625656
+lora3_raw_s04,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.6448730591257785,0.6980873457341382,1.0,1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.22566654123782703,0.07522218041260902,0.11024647116254649,0.1767973696882266,0.9810342884035478,0.4714104000352283,0.8183357182163287
+lora3_raw_s04,BD,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.6614774232862065,0.6270788729540635,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.09117769614906729,0.03039256538302243,0.08339840050651204,0.5511383734165161,0.8534778641551704,0.5913920418334938,0.7315628047389192
+lora3_raw_s04,HC,ifng_response_log2fc_bgcorr_high_vs_other,0.23423654039133002,0.18005658946369935,0.9,0.8,0.009765625,10,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.22930803615908402,0.07251356800429543,0.3276265257388739,-0.07491580587108398,0.6578354949719696,0.07019945313035839,0.3982736276523017
+lora3_raw_s04,HC,ifng_response_log2fc_high_vs_other,-0.7867915917392871,-0.757423007616103,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.29233106834239275,0.09244320067923043,0.18235637220259915,-1.274915403796787,-0.3229956345161472,-0.9959126403078001,-0.5776705431707742
+lora3_raw_s04,HC,ifng_response_c1q_high_minus_other,0.09352642955858662,0.08903201740806474,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.015673064861667314,0.004956258287842056,0.023614287219655444,0.07768656308835609,0.12513808631222115,0.08231459437206674,0.10473826474510649
+lora3_raw_s04,HC,proinflammatory_log2fc_bgcorr_high_vs_other,0.10374312841866953,0.11032746047463965,0.8,0.6,0.037109375,10,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.13078616999061804,0.04135821836203155,0.15721526087225668,-0.08123885792455464,0.29519404839314833,0.010184338510427618,0.19730191832691146
+lora3_raw_s04,HC,proinflammatory_log2fc_high_vs_other,-0.6077765274305595,-0.5535255297955599,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.18416200449463976,0.0582371392665228,0.21287114989018519,-1.0077057657736121,-0.38434316691410914,-0.7395180891632007,-0.47603496569791837
+lora3_raw_s04,HC,proinflammatory_c1q_high_minus_other,0.01931338095971836,0.025167037676478293,0.8,0.6,0.01953125,10,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.01684435188435952,0.005326651766392525,0.02040719566196518,-0.008581498148507588,0.037915038186293826,0.0072636575126417986,0.03136310440679492
+lora3_raw_s04,HC,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.3136983604483259,0.3105605547075605,1.0,1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.14476937496312006,0.0457800960322414,0.14455648064682142,0.09711735755457784,0.5370290093933386,0.21013658829540133,0.41726013260125044
+lora3_raw_s04,HC,phagocytosis_antigen_log2fc_high_vs_other,-0.5475990805032576,-0.5311538218547232,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.18308258093714458,0.05789579556635015,0.19235833984551842,-0.839925006485196,-0.2037207736690798,-0.6785684691395771,-0.416629691866938
+lora3_raw_s04,HC,phagocytosis_antigen_c1q_high_minus_other,0.11548003625429018,0.11444289173541139,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.019877512486548433,0.006285821367593012,0.02604480453921104,0.08850247120011773,0.14946077628706844,0.10126052042351964,0.12969955208506073
+lora3_raw_s04,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.4658146567766766,1.3690003941623439,1.0,1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.3599874290055082,0.11383802046855689,0.4784708465817884,1.0249382639606615,2.148683759139132,1.208295163374962,1.7233341501783912
+lora3_raw_s04,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.8190871977353001,0.751770997322863,1.0,1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.25137359171072066,0.07949130934230991,0.2738313666957428,0.4548190902013919,1.349266687128464,0.6392653629263859,0.9989090325442144
+lora3_raw_s04,HC,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.7738135010727192,0.7629721543750442,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.07002562881514247,0.022144048164136818,0.07053194966770704,0.644324828616984,0.8841628154666641,0.7237201839048686,0.8239068182405698

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/lora3_raw_s04/rule_A/sample.csv

@@ -0,0 +1,20 @@
+cohort,sample_id,group,source,n_monocytes,n_c1q_high,c1q_high_fraction,ifng_response_mean_c1q_high,ifng_response_mean_other,ifng_response_c1q_high_minus_other,proinflammatory_mean_c1q_high,proinflammatory_mean_other,proinflammatory_c1q_high_minus_other,phagocytosis_antigen_mean_c1q_high,phagocytosis_antigen_mean_other,phagocytosis_antigen_c1q_high_minus_other,ifng_response_log2fc_bgcorr_high_vs_other,proinflammatory_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,ifng_response_log2fc_high_vs_other,proinflammatory_log2fc_high_vs_other,phagocytosis_antigen_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_mean_c1q_high,phagocytosis_antigen_mhcii_fcgr_mean_other,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,background_log2fc_all_genes
+lora3_raw_s04,BDU1,BD,generated,814,42,0.051597051597051594,0.32516443944938084,0.24393041250014938,0.08123402694923146,0.17895261928278094,0.15954980904519295,0.019402810237587997,0.5606744677450082,0.431088478445934,0.12958598929907417,-0.017499683510958007,0.14339240222892305,0.3423173645710035,0.9711231988866544,-0.5538050091310089,-0.28984891737551605,-0.12620976152275942,0.7527833153880636,1.9332350535555491,1.195323230440363,0.7379118231151862,-0.3065973095002958
+lora3_raw_s04,BDU2,BD,generated,576,23,0.03993055555555555,0.3294956546067053,0.25771923949985165,0.07177641510685367,0.15972709305379065,0.15974734380136568,-2.0250747575029093e-05,0.5395993369297983,0.44484776221340055,0.09475157471639778,0.09883061114213597,-0.08232012545428023,0.38033826968625156,1.033405104997405,-0.6776169960790125,-0.6401663057383952,-0.23117764916984274,0.6980873457341382,1.8413652681124864,1.2142863951584228,0.6270788729540635,-0.42316637982137006
+lora3_raw_s04,BDU3,BD,generated,850,37,0.04352941176470588,0.35967304529914806,0.28692028146624093,0.07275276383290713,0.1944272613930902,0.17683630362331523,0.017590957769774956,0.5459463783268792,0.438580630632429,0.10736574769445018,0.15637428612865129,0.014333048018352038,0.13393122435913385,0.863099949924077,-0.35052555642332606,-0.39699855814631385,-0.2925461807041235,0.6405768740996636,1.850856885160909,1.2060088551128265,0.6448480300480826,-0.30435794430632956
+lora3_raw_s04,BDV1,BD,generated,943,72,0.07635206786850478,0.35083365201408406,0.29152353782892504,0.059310114185159024,0.1835370250400025,0.17990898940365907,0.003628035636343424,0.5341744696801641,0.45035638785133275,0.08381808182883138,0.12868784751526077,0.07333192562756809,0.2031418709544482,0.6502054230992665,-0.24029975651429117,-0.2289988105206156,-0.1274906825198342,0.43501249102017997,1.8099185525539083,1.2587801791373923,0.5511383734165161,-0.21864993462001475
+lora3_raw_s04,BDV2,BD,generated,741,47,0.06342780026990553,0.35861759328654924,0.275118896822518,0.08349869646403124,0.17525743529777713,0.1704084648750765,0.0048489704227006325,0.5542765414776397,0.4439954693730113,0.1102810721046284,0.21023602780646414,-0.0780039338647907,0.15609068469268395,0.8982354062867688,-0.2326836720815045,-0.4060470761501538,-0.21370046631170622,0.7191699804643331,1.8849717544444533,1.2636273912110083,0.621344363233445,-0.2544695715550527
+lora3_raw_s04,BDV3,BD,generated,888,37,0.041666666666666664,0.3294214816471473,0.24137506782585252,0.08804641382129477,0.18035675481401278,0.15972541772177054,0.02063133709224224,0.5411910531196317,0.4246391106246721,0.11655194249495959,0.02555602823328037,-0.05444213269957636,0.08749053533002132,1.0743744976871976,-0.6065106532641723,-0.5413733233910238,-0.4348750043437897,0.7508233452622101,1.8029913273407883,1.0982485636008312,0.704742763739957,-0.3443385959114841
+lora3_raw_s04,BDV4,BD,generated,696,37,0.05316091954022988,0.3411549623969143,0.2579812018139707,0.08317376058294357,0.15795212650889476,0.15645466082308696,0.0014974656858078028,0.5407994160100508,0.45306748844055456,0.08773192756949622,0.368773281417011,-0.03409296766569474,0.2711809233611049,0.570034964767572,-0.22143383079432036,-0.45962023619219217,-0.23010684345489654,0.1767973696882266,1.8884577340000146,1.2645946338248055,0.6238631001752091,-0.3336240668853722
+lora3_raw_s04,BDV5,BD,generated,946,51,0.05391120507399577,0.3592681810476545,0.27955573240080983,0.07971244864684468,0.20274377967039983,0.188554431775449,0.014189347894950827,0.5303331530351386,0.43151813191080735,0.09881502112433127,0.1891776615664749,0.07462703007582369,0.17717004700932257,0.8075813081087425,-0.1586038717872426,-0.19388374687714224,-0.11214634040873155,0.6495725220716441,1.7878700250528536,1.198978406314624,0.5888916187382296,-0.2048469886881562
+lora3_raw_s04,BDV6,BD,generated,1016,35,0.0344488188976378,0.33873598299476887,0.2394199920879381,0.09931599090683077,0.17479498639873323,0.16273392922441826,0.012061057174314965,0.5204781264569524,0.39753838110688416,0.12293974535006819,0.05028954732222801,-0.021741561284959927,0.19953351899740931,1.4051567139387493,-0.6893436484919259,-0.5575534980327503,-0.4199900546543474,0.9810342884035478,1.9525071836576409,1.0990293195024705,0.8534778641551704,-0.4092398027151574
+lora3_raw_s04,HC1,HC,generated,908,24,0.02643171806167401,0.31472149411548705,0.22584045695086646,0.08888103716462059,0.1764959345603807,0.15167222582979112,0.02482370873058959,0.5501115898797355,0.4106381450257585,0.139473444853977,0.009763558551793405,0.12421204356368915,0.5065142647347749,1.1010684658938945,-0.8142409135617394,-0.5025079958827303,-0.2037207736690798,0.5893863762386721,1.918760691349041,1.1221001546140426,0.7966605367349984,-0.4677403208953927
+lora3_raw_s04,HC10,HC,generated,650,18,0.027692307692307693,0.36396048686418897,0.23882240055196782,0.12513808631222115,0.18983021260567534,0.15629554485804184,0.0335346677476335,0.5071627348583748,0.4115039875115913,0.09565874734678353,0.6578354949719696,0.1772937414335751,0.32108659466303474,1.0249382639606615,-0.3229956345161472,-0.4680605479444638,-0.5119781889266375,0.4548190902013919,1.7695905273434482,1.1252656987264642,0.644324828616984,-0.5172328522770722
+lora3_raw_s04,HC2,HC,generated,676,23,0.034023668639053255,0.31886837631386544,0.23875324501882036,0.08011513129504508,0.1633376858781269,0.15856281386311746,0.004774872015009424,0.5034283209123632,0.4149258497122455,0.08850247120011773,0.15654177285257173,-0.054687086447417786,0.12281373393392378,1.3079701821704046,-0.7309822691533502,-0.7189852753420213,-0.6578356861590704,0.6790504893347699,1.8434453321935291,1.1428723773351257,0.7005729548584034,-0.4895184692240105
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paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/lora3_raw_s04/rule_B/group.csv

@@ -0,0 +1,25 @@
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paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/lora3_raw_s04/rule_B/sample.csv

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