Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/immicro/fewshot3/out_fractions/.run.log

@@ -0,0 +1,151 @@
+>Running CIBERSORTxFractions...
+>[Options] username: [REDACTED]
+>[Options] token: [REDACTED]
+>[Options] single_cell: TRUE
+>[Options] refsample: refsample.txt
+>[Options] mixture: mixture.txt
+>[Options] rmbatchSmode: TRUE
+>[Options] fraction: 0
+>[Options] replicates: 5
+>[Options] sampling: 0.5
+>[Options] G.min: 300
+>[Options] G.max: 500
+>[Options] q.value: 0.01
+>[Options] perm: 0
+>[Options] QN: FALSE
+>[Options] verbose: TRUE
+>Making reference sample file.
+>Making phenotype class file.
+>==========Signature Matrix Settings============
+>Pure samples file: /src/outdir//CIBERSORTx_refsample_inferred_refsample.txt
+>Phenotype classes file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.txt
+>Minimum number of DEGs to consider from each phenotype for signature matrix set to: 300
+>Maximum number of DEGs to consider from each phenotype for signature matrix set to: 500
+>Q-value for signature matrix construction set to: 0.01
+>Quantile normalization of input samples is disabled
+>===============================================
+>C++14
+>Loaded 30 columns and 16131 rows
+>=============Make Signature Matrix=============
+>Maximum condition number (kappa):999
+>49311 DEG expressed across 6 samples were identified
+>Group size: 479, Kappa: 11.9699303978128
+>Best kappa: 11.9699303978128 
+>SVD UpperRightDiag: 37298.2
+>SVD LowerRightDiag: 3115.99
+>=============CIBERSORTx Settings===============
+>Mixture file: /src/data/mixture.txt
+>Signature matrix file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
+>Enable verbose output
+>Do S-mode batch correction
+>==================CIBERSORTx===================
+>Adjusting mixtures with S-mode batch correction.
+>Running CIBERSORTx on unadjusted mixtures with S-mode adjusted signature matrix.
+>=============CIBERSORTx Settings===============
+>Mixture file: /src/data/mixture.txt
+>Signature matrix file: /src/outdir//CIBERSORTx_sigmatrix_Adjusted.txt
+>Enable verbose output
+>==================CIBERSORTx===================
+column B cell DC Monocyte NK cell Other T cell P-value Correlation RMSE %Completed
+1 0.0561729 0.0312575 0.199899 0.173224 9.82127e-05 0.539348 9999 0.980392
+2 0.0554002 0.0375626 0.220302 0.155283 0.0143397 0.517112 9999 1.96078
+3 0.0210948 0.113265 0.266106 0.0193208 0 0.580214 9999 2.94118
+4 0.0274494 0.041105 0.467112 0.110525 0.00115791 0.352651 9999 3.92157
+5 0.0317031 0.306199 0.28445 0.0899239 0.0164546 0.27127 9999 4.90196
+6 0.0361261 0.0417717 0.255301 0.0632291 0.00363731 0.599935 9999 5.88235
+7 0.0639998 0.0542062 0.315234 0.0953791 0 0.471181 9999 6.86275
+8 0 0.106536 0.24276 0.010777 0.0272627 0.612664 9999 7.84314
+9 0.22983 0 0.297767 0.0779264 0.0462887 0.348188 9999 8.82353
+10 0.0229979 0.0970054 0.380785 0.0307334 0.0357478 0.432731 9999 9.80392
+11 0.0828929 0.00589184 0.203347 0 0.0160849 0.691784 9999 10.7843
+12 0.0606279 0.0743287 0.440499 0.0193956 0 0.405148 9999 11.7647
+13 0.0461355 0.10948 0.305459 0.0447743 0.017059 0.477093 9999 12.7451
+14 0.0178032 0.0286803 0.645445 0.0478119 0.0229771 0.237283 9999 13.7255
+15 0.155514 0 0.42456 0.0053841 0.00875798 0.405784 9999 14.7059
+16 0.0730075 0.0394182 0.288851 0 0 0.598723 9999 15.6863
+17 0.0408862 0.00571463 0.383161 0 0.0111125 0.559125 9999 16.6667
+18 0.157442 0 0.338751 0.0953345 0.00344685 0.405025 9999 17.6471
+19 0.134763 0 0.180036 0.0290827 0.0320659 0.624052 9999 18.6275
+20 0.149798 0.071943 0.222226 0.00910888 0.0371843 0.509739 9999 19.6078
+21 0.11983 0.125072 0.424676 0.0339847 0.00249925 0.293939 9999 20.5882
+22 0.124997 0 0.4593 0.103166 0.00699474 0.305542 9999 21.5686
+23 0.0390196 0.0907134 0.504072 0.0900707 0.105071 0.171054 9999 22.549
+24 0.000219298 0.0910371 0.207147 0.0948659 0 0.60673 9999 23.5294
+25 0.160514 0 0.226661 0.0607515 0.000842642 0.551231 9999 24.5098
+26 0.129378 0 0.450623 0.0742622 0 0.345737 9999 25.4902
+27 0.0749008 0.0124686 0.442248 0.0430971 0.0045514 0.422734 9999 26.4706
+28 0.0758161 0.149966 0.373263 0 0 0.400955 9999 27.451
+29 0.0251445 0.0952189 0.307325 0.0962691 0.0511128 0.42493 9999 28.4314
+30 0.101766 0.0599842 0.354759 0.0580227 0.00107499 0.424393 9999 29.4118
+31 0.0908543 0.066668 0.268506 0.104479 0.0893696 0.380123 9999 30.3922
+32 0.110402 0 0.339353 0.108142 0.0315454 0.410557 9999 31.3725
+33 0.11927 0.0289853 0.412599 0.0597446 0.0573066 0.322094 9999 32.3529
+34 0.0897869 0.00629225 0.486888 0.127379 0.00233494 0.287319 9999 33.3333
+35 0.0470985 0.0909464 0.515163 0 0 0.346792 9999 34.3137
+36 0.0451107 0.118855 0.275014 0.124327 0 0.436693 9999 35.2941
+37 0.191276 0 0.292443 0.011675 0.000450612 0.504156 9999 36.2745
+38 0.00315706 0.0953421 0.32371 0 0.00730088 0.57049 9999 37.2549
+39 0.103496 0 0.308778 0.0358598 0.016915 0.534952 9999 38.2353
+40 0.0730593 0.0331139 0.26346 0.119016 0.00703476 0.504317 9999 39.2157
+41 0.0812024 0.0524668 0.387177 0.0177785 0 0.461375 9999 40.1961
+42 0.07176 0.0591126 0.23053 0.127485 0 0.511113 9999 41.1765
+43 0.0886335 0.141658 0.0690281 0.0695098 0.023706 0.607465 9999 42.1569
+44 0.0829809 0.0144689 0.177202 0.0518443 0.0219833 0.651521 9999 43.1373
+45 0 0.119965 0.193799 0.0114721 0.0112498 0.663514 9999 44.1176
+46 0.0820588 0 0.22425 0.0486592 0.00514525 0.639887 9999 45.098
+47 0.12713 0.10426 0.132351 0 0.0304802 0.605779 9999 46.0784
+48 0.0938032 0.0373803 0.221671 0.0747225 0 0.572423 9999 47.0588
+49 0.106252 0.0497967 0.248785 0 0.00493307 0.590234 9999 48.0392
+50 0.110518 0.00844736 0.105316 0 0.0103516 0.765367 9999 49.0196
+51 0.0404976 0.0828441 0.271382 0.0117595 0.167756 0.425761 9999 50
+52 0.00447991 0.178374 0.142742 0.163323 0.0224747 0.488606 9999 50.9804
+53 0.00629776 0.0597092 0.393768 0.0119629 0 0.528262 9999 51.9608
+54 0.0186717 0.117091 0.30363 0.193441 0.0135433 0.353622 9999 52.9412
+55 0.0541018 0.0357075 0.406546 0.0756854 0.0142916 0.413668 9999 53.9216
+56 0.040697 0.0735329 0.31533 0.170298 0.0275891 0.372552 9999 54.902
+57 0.0954523 0.221703 0.421618 0.0835015 0.0449444 0.13278 9999 55.8824
+58 0.0910367 0.0679567 0.218152 0.048091 0 0.574763 9999 56.8627
+59 0.125434 0 0.2986 0.0189844 0.00518133 0.551801 9999 57.8431
+60 0.125998 0.0464338 0.278588 0.0171442 0.0233396 0.508497 9999 58.8235
+61 0.153225 0.0625353 0.248432 0 0.0549356 0.480872 9999 59.8039
+62 0.0957257 0.000177087 0.395997 0.0333523 0.0476866 0.427062 9999 60.7843
+63 0.119087 0.0622649 0.252937 0.126304 0.00287551 0.436532 9999 61.7647
+64 0.062057 0.0738822 0.367859 0 0.0090995 0.487103 9999 62.7451
+65 0.0436765 0.144013 0.285633 0.158594 0 0.368083 9999 63.7255
+66 0.11632 0.0331116 0.237881 0.0528279 0 0.559859 9999 64.7059
+67 0.11479 0.0147261 0.221154 0.229134 0 0.420195 9999 65.6863
+68 0.0589819 0.0390768 0.203323 0 0.0160339 0.682584 9999 66.6667
+69 0.0716877 0.119335 0.14938 0.457189 0 0.202408 9999 67.6471
+70 0.132748 0.0052216 0.224216 0.0892812 0.0131202 0.535414 9999 68.6275
+71 0.116293 0.0244549 0.30567 0.0549482 0.0143601 0.484273 9999 69.6078
+72 0.128679 0.115292 0.307581 0.0616866 0.089288 0.297473 9999 70.5882
+73 0.0403054 0.0878865 0.416245 0.132844 0 0.322719 9999 71.5686
+74 0.141398 0.106455 0.130725 0.149711 0.000393868 0.471318 9999 72.549
+75 0.121617 0 0.343167 0.0860763 0.0132011 0.435938 9999 73.5294
+76 0.116919 0.0160283 0.251044 0 0.0904141 0.525595 9999 74.5098
+77 0.0111754 0.138299 0.209482 0 0.00366527 0.637378 9999 75.4902
+78 0.123656 0.00740322 0.239179 0.00546193 0.139067 0.485233 9999 76.4706
+79 0.0783504 0.0409621 0.394817 0 0 0.485871 9999 77.451
+80 0.103032 0 0.495638 0.0402544 0 0.361075 9999 78.4314
+81 0.0522348 0.187971 0.291037 0.157481 0 0.311276 9999 79.4118
+82 0.104956 0 0.3612 0.0327219 0.00846772 0.492655 9999 80.3922
+83 0.0227873 0.0902178 0.352234 0.0852707 0.00470188 0.444788 9999 81.3725
+84 0.0318321 0.122626 0.286787 0 0 0.558754 9999 82.3529
+85 0.146758 0 0.181855 0.167895 0.013268 0.490223 9999 83.3333
+86 0.110648 0.0206216 0.267483 0.0111662 0 0.590082 9999 84.3137
+87 0.0146157 0.0507188 0.197057 0.0446835 0.0236562 0.669269 9999 85.2941
+88 0.151521 0.0841892 0.187468 0.0526705 0.0092311 0.514921 9999 86.2745
+89 0.131219 0.0846494 0.41892 0.0302446 0.0169724 0.317994 9999 87.2549
+90 0.0809894 0 0.310993 0.0689817 0.247508 0.291528 9999 88.2353
+91 0.0689672 0.0609469 0.536694 0.105006 0.0128211 0.215564 9999 89.2157
+92 0.0514141 0 0.514961 0.0377598 0.00215022 0.393715 9999 90.1961
+93 0.0184727 0.0271951 0.402791 0.140968 0.00110227 0.409471 9999 91.1765
+94 0.177426 0.0926319 0.307719 0.0275683 0.0566197 0.338035 9999 92.1569
+95 0.103905 0.0201719 0.305608 0.112018 0.0151258 0.443172 9999 93.1373
+96 0.0693309 0.0488329 0.442649 0.0755127 0.0306172 0.333057 9999 94.1176
+97 0.130964 0.126171 0.470029 0.138542 0 0.134295 9999 95.098
+98 0.0797029 0.0714468 0.172498 0.0270628 0 0.649289 9999 96.0784
+99 0.0957013 0.0615632 0.335421 0.154989 0.000303813 0.352022 9999 97.0588
+100 0.0862429 0.0251385 0.399021 0.018401 0.017299 0.453898 9999 98.0392
+101 0.210443 0.0552736 0.215995 0.118074 0.020263 0.379952 9999 99.0196
+102 0.102258 0.073578 0.267171 0.0572365 0 0.499756 9999 100

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/immicro/fewshot4/out_fractions/.run.log

@@ -0,0 +1,151 @@
+>Running CIBERSORTxFractions...
+>[Options] username: [REDACTED]
+>[Options] token: [REDACTED]
+>[Options] single_cell: TRUE
+>[Options] refsample: refsample.txt
+>[Options] mixture: mixture.txt
+>[Options] rmbatchSmode: TRUE
+>[Options] fraction: 0
+>[Options] replicates: 5
+>[Options] sampling: 0.5
+>[Options] G.min: 300
+>[Options] G.max: 500
+>[Options] q.value: 0.01
+>[Options] perm: 0
+>[Options] QN: FALSE
+>[Options] verbose: TRUE
+>Making reference sample file.
+>Making phenotype class file.
+>==========Signature Matrix Settings============
+>Pure samples file: /src/outdir//CIBERSORTx_refsample_inferred_refsample.txt
+>Phenotype classes file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.txt
+>Minimum number of DEGs to consider from each phenotype for signature matrix set to: 300
+>Maximum number of DEGs to consider from each phenotype for signature matrix set to: 500
+>Q-value for signature matrix construction set to: 0.01
+>Quantile normalization of input samples is disabled
+>===============================================
+>C++14
+>Loaded 30 columns and 16131 rows
+>=============Make Signature Matrix=============
+>Maximum condition number (kappa):999
+>47301 DEG expressed across 6 samples were identified
+>Group size: 456, Kappa: 25.7125576665078
+>Best kappa: 25.7125576665078 
+>SVD UpperRightDiag: 37989.4
+>SVD LowerRightDiag: 1477.46
+>=============CIBERSORTx Settings===============
+>Mixture file: /src/data/mixture.txt
+>Signature matrix file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
+>Enable verbose output
+>Do S-mode batch correction
+>==================CIBERSORTx===================
+>Adjusting mixtures with S-mode batch correction.
+>Running CIBERSORTx on unadjusted mixtures with S-mode adjusted signature matrix.
+>=============CIBERSORTx Settings===============
+>Mixture file: /src/data/mixture.txt
+>Signature matrix file: /src/outdir//CIBERSORTx_sigmatrix_Adjusted.txt
+>Enable verbose output
+>==================CIBERSORTx===================
+column B cell DC Monocyte NK cell Other T cell P-value Correlation RMSE %Completed
+1 0.0464796 0 0.217823 0.151298 0.191635 0.392764 9999 0.980392
+2 0.0465989 0.0195952 0.232776 0.118672 0.154325 0.428032 9999 1.96078
+3 0.0156621 0.0836695 0.271037 0 0.214797 0.414834 9999 2.94118
+4 0.0305933 0.0327713 0.463615 0.0888777 0.203282 0.18086 9999 3.92157
+5 0.0146949 0.272776 0.326327 0.0343721 0.159015 0.192815 9999 4.90196
+6 0.0145497 0.0325035 0.283077 0.00108647 0.127012 0.541771 9999 5.88235
+7 0.0589111 0.0401253 0.316064 0.0237433 0.190607 0.370549 9999 6.86275
+8 0 0.0435264 0.264666 0 0.244604 0.447204 9999 7.84314
+9 0.203819 0.0368859 0.291251 0.0227185 0.13426 0.311066 9999 8.82353
+10 0.0426778 0.0888902 0.371332 0.00918389 0.122789 0.365127 9999 9.80392
+11 0.0414626 0 0.218701 0 0.217518 0.522318 9999 10.7843
+12 0.0621473 0.0414809 0.451118 0 0.142505 0.302749 9999 11.7647
+13 0.0459991 0.0803727 0.288567 0.0124552 0.217228 0.355378 9999 12.7451
+14 0.0134318 0.0237672 0.657669 0.0225775 0.127327 0.155228 9999 13.7255
+15 0.153714 0 0.414192 0 0.185969 0.246125 9999 14.7059
+16 0.0579135 0.0158468 0.280755 0 0.157018 0.488467 9999 15.6863
+17 0.0289695 0 0.385905 0 0.114459 0.470666 9999 16.6667
+18 0.0931948 0 0.181398 0 0.202521 0.522886 9999 17.6471
+19 0.116981 0.0600232 0.233338 0 0.246482 0.343176 9999 18.6275
+20 0.0995946 0.0985355 0.435406 0.00900598 0.176085 0.181373 9999 19.6078
+21 0.111967 0 0.44092 0.0422194 0.176375 0.228519 9999 20.5882
+22 0.029681 0.0340149 0.229876 0.0648131 0.146848 0.494766 9999 21.5686
+23 0.14029 0 0.220314 0.0149169 0.194962 0.429516 9999 22.549
+24 0.115834 0 0.441439 0.0372547 0.167602 0.23787 9999 23.5294
+25 0.0424461 0.00889435 0.44838 0.0386947 0.12036 0.341225 9999 24.5098
+26 0.0685112 0.114326 0.415614 0 0.127547 0.274003 9999 25.4902
+27 0.0222581 0.0726351 0.290097 0.0296748 0.369518 0.215816 9999 26.4706
+28 0.0546161 0.097468 0.347553 0 0.133296 0.367066 9999 27.451
+29 0.0584674 0 0.387705 0 0.188819 0.365009 9999 28.4314
+30 0.082941 0.0426999 0.271264 0.0770068 0.251596 0.274492 9999 29.4118
+31 0.109686 0 0.333771 0.0607195 0.242068 0.253756 9999 30.3922
+32 0.115143 0.0228991 0.406264 0.00910606 0.211515 0.235072 9999 31.3725
+33 0.0861481 0.00306972 0.488288 0.0780157 0.140288 0.20419 9999 32.3529
+34 0.0321047 0.0914588 0.494138 0 0.180368 0.20193 9999 33.3333
+35 0.0468898 0.0936843 0.281318 0.0767715 0.13457 0.366766 9999 34.3137
+36 0.181939 0 0.27959 0 0.140521 0.39795 9999 35.2941
+37 0 0.0635022 0.330407 0 0.219213 0.386878 9999 36.2745
+38 0.0688097 0 0.304423 0.00254928 0.149253 0.474964 9999 37.2549
+39 0.059097 0.0133116 0.305499 0.0307313 0.110626 0.480734 9999 38.2353
+40 0.0867058 0.0436238 0.39952 0 0.14962 0.32053 9999 39.2157
+41 0.0565754 0.0429613 0.232444 0.0630613 0.176188 0.42877 9999 40.1961
+42 0.0748558 0.120385 0.0702636 0.0352892 0.257913 0.441294 9999 41.1765
+43 0.054984 0 0.194198 0.00757739 0.220583 0.522658 9999 42.1569
+44 0 0.0728267 0.220434 0 0.178722 0.528018 9999 43.1373
+45 0.078059 0 0.236653 0.0353113 0.112977 0.536999 9999 44.1176
+46 0.0992466 0.0822843 0.137273 0 0.238092 0.443105 9999 45.098
+47 0.0718054 0.0270205 0.261252 0 0.120151 0.519771 9999 46.0784
+48 0.0749938 0.00161511 0.106673 0 0.18666 0.630058 9999 47.0588
+49 0.0515475 0.0291485 0.315869 0.0123707 0.191579 0.399486 9999 48.0392
+50 0.00455844 0.161855 0.168142 0.132843 0.132003 0.400599 9999 49.0196
+51 0.00307836 0.0430513 0.400414 0 0.143067 0.410389 9999 50
+52 0.0192411 0.0996204 0.307123 0.155195 0.10343 0.31539 9999 50.9804
+53 0.053146 0.00555801 0.420461 0.0436363 0.221054 0.256145 9999 51.9608
+54 0.0249597 0.0577647 0.311588 0.124309 0.180312 0.301067 9999 52.9412
+55 0.0657616 0.238251 0.397693 0.0541 0.187882 0.0563121 9999 53.9216
+56 0.0781498 0.0506936 0.239841 0.0216608 0.13673 0.472924 9999 54.902
+57 0.084299 0 0.282179 0 0.164205 0.469318 9999 55.8824
+58 0.0872336 0.0493279 0.262817 0.00830149 0.162866 0.429454 9999 56.8627
+59 0.14773 0.0355346 0.243432 0 0.214006 0.359297 9999 57.8431
+60 0.0697984 0 0.383517 0 0.191796 0.354888 9999 58.8235
+61 0.119728 0.0385977 0.257995 0.0935872 0.177102 0.31299 9999 59.8039
+62 0.0567497 0.0551351 0.359128 0 0.16588 0.363107 9999 60.7843
+63 0.036826 0.129214 0.305746 0.119436 0.0887742 0.320005 9999 61.7647
+64 0.111278 0.0227199 0.246733 0 0.167583 0.451685 9999 62.7451
+65 0.102725 0.0108353 0.209755 0.201681 0.139094 0.335909 9999 63.7255
+66 0.0483419 0.00678333 0.203557 0 0.20734 0.533977 9999 64.7059
+67 0.0602013 0.11324 0.161691 0.442529 0.042966 0.179372 9999 65.6863
+68 0.111083 0 0.216167 0.0603488 0.1515 0.460902 9999 66.6667
+69 0.104166 0.0144568 0.3209 0 0.182202 0.378275 9999 67.6471
+70 0.0233176 0.0906017 0.440784 0.0903841 0.04339 0.311522 9999 68.6275
+71 0.119977 0.0815175 0.146949 0.125312 0.198083 0.328161 9999 69.6078
+72 0.116715 0 0.325125 0.0311152 0.222383 0.304662 9999 70.5882
+73 0.0974814 0 0.226369 0 0.268999 0.407151 9999 71.5686
+74 0.00681794 0.102828 0.235645 0 0.140492 0.514217 9999 72.549
+75 0.108587 0 0.250949 0 0.174959 0.465504 9999 73.5294
+76 0.0587547 0.0385349 0.400088 0 0.14963 0.352992 9999 74.5098
+77 0.107532 0.00174924 0.498177 0 0.116638 0.275905 9999 75.4902
+78 0.0614585 0.15688 0.301024 0.114626 0.102498 0.263512 9999 76.4706
+79 0.0771829 0 0.362508 0 0.145752 0.414556 9999 77.451
+80 0.0326002 0.0554705 0.332525 0 0.232504 0.346901 9999 78.4314
+81 0.00296587 0.081672 0.345454 0.0160189 0.203487 0.350403 9999 79.4118
+82 0.0232437 0.0996969 0.282375 0 0.200246 0.394439 9999 80.3922
+83 0.0272229 0.0565397 0.378468 0.00938505 0.224579 0.303805 9999 81.3725
+84 0.133885 0 0.18295 0.119347 0.158313 0.405504 9999 82.3529
+85 0.0888088 0 0.281463 0 0.125793 0.503936 9999 83.3333
+86 0.00990279 0.0169492 0.220146 0 0.140099 0.612903 9999 84.3137
+87 0.137975 0.0591356 0.205286 0 0.201959 0.395644 9999 85.2941
+88 0.138039 0.0639418 0.411706 0 0.222289 0.164023 9999 86.2745
+89 0.0465156 0.00464996 0.333243 0.0479567 0.218508 0.349127 9999 87.2549
+90 0.080935 0.0366196 0.535295 0.0480645 0.199567 0.0995186 9999 88.2353
+91 0.041526 0 0.532344 0.00397465 0.179257 0.242899 9999 89.2157
+92 0.024838 0.00399395 0.407988 0.10339 0.130733 0.329057 9999 90.1961
+93 0.151647 0.0846744 0.28639 0 0.245589 0.231699 9999 91.1765
+94 0.092736 0.00964517 0.300013 0.0623661 0.182545 0.352695 9999 92.1569
+95 0.0728278 0.0384652 0.470482 0.0362564 0.0864684 0.2955 9999 93.1373
+96 0.0975756 0 0.358668 0.0351271 0.164348 0.344281 9999 94.1176
+97 0.106446 0.143595 0.464114 0.113091 0.1396 0.0331526 9999 95.098
+98 0.053919 0.0391623 0.215873 0 0.108686 0.58236 9999 96.0784
+99 0.0968905 0.048795 0.342517 0.104749 0.144454 0.262594 9999 97.0588
+100 0.0786971 0.0193501 0.384729 0 0.210077 0.307147 9999 98.0392
+101 0.178517 0.0329628 0.233227 0.0673045 0.192675 0.295313 9999 99.0196
+102 0.0911718 0.0649619 0.284305 0.00441455 0.0771326 0.478014 9999 100

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv0/hires_run.log

@@ -0,0 +1,15 @@
+>Running CIBERSORTx high-resolution GEP imputation...
+>[Options] username: [REDACTED]
+>[Options] token: [REDACTED]
+>[Options] mixture: mixture.txt
+>[Options] sigmatrix: sigmatrix.txt
+>[Options] cibresults: fractions_results.txt
+>[Options] rmbatchSmode: TRUE
+>[Options] sourceGEPs: source_geps.txt
+>[Options] subsetgenes: hires_genes.txt
+>[Options] threads: 4
+>Loaded 47 mixture samples, 5927 genes, and 6 cell subsets...
+>Window size adaptively set to 24
+>Imputing high-resolution cell type GEPs...done.
+>Writing output to disk ...done.
+>Running time (sec): 642

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/imperial_eskd/cv0/out_fractions/.run.log

@@ -0,0 +1,96 @@
+>Running CIBERSORTxFractions...
+>[Options] username: [REDACTED]
+>[Options] token: [REDACTED]
+>[Options] single_cell: TRUE
+>[Options] refsample: refsample.txt
+>[Options] mixture: mixture.txt
+>[Options] rmbatchSmode: TRUE
+>[Options] fraction: 0
+>[Options] replicates: 5
+>[Options] sampling: 0.5
+>[Options] G.min: 300
+>[Options] G.max: 500
+>[Options] q.value: 0.01
+>[Options] perm: 0
+>[Options] QN: FALSE
+>[Options] verbose: TRUE
+>Making reference sample file.
+>Making phenotype class file.
+>==========Signature Matrix Settings============
+>Pure samples file: /src/outdir//CIBERSORTx_refsample_inferred_refsample.txt
+>Phenotype classes file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.txt
+>Minimum number of DEGs to consider from each phenotype for signature matrix set to: 300
+>Maximum number of DEGs to consider from each phenotype for signature matrix set to: 500
+>Q-value for signature matrix construction set to: 0.01
+>Quantile normalization of input samples is disabled
+>===============================================
+>C++14
+>Loaded 30 columns and 19656 rows
+>=============Make Signature Matrix=============
+>Maximum condition number (kappa):999
+>51580 DEG expressed across 6 samples were identified
+>Group size: 500, Kappa: 43.8919453072666
+>Best kappa: 43.8919453072666 
+>SVD UpperRightDiag: 189250
+>SVD LowerRightDiag: 4311.72
+>=============CIBERSORTx Settings===============
+>Mixture file: /src/data/mixture.txt
+>Signature matrix file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
+>Enable verbose output
+>Do S-mode batch correction
+>==================CIBERSORTx===================
+>Adjusting mixtures with S-mode batch correction.
+>Running CIBERSORTx on unadjusted mixtures with S-mode adjusted signature matrix.
+>=============CIBERSORTx Settings===============
+>Mixture file: /src/data/mixture.txt
+>Signature matrix file: /src/outdir//CIBERSORTx_sigmatrix_Adjusted.txt
+>Enable verbose output
+>==================CIBERSORTx===================
+column B cell DC Monocyte NK cell Other T cell P-value Correlation RMSE %Completed
+1 0.0955532 0 0.142982 0 0.0607614 0.700704 9999 2.12766
+2 0.0779594 0 0.329929 0 0.145942 0.44617 9999 4.25532
+3 0.0728985 0 0.452086 0 0.152491 0.322524 9999 6.38298
+4 0 0.226027 0.420333 0 0.0520441 0.301596 9999 8.51064
+5 0 0.340224 0.28292 0 0.0138838 0.362972 9999 10.6383
+6 0 0.328401 0.184962 0 0 0.486637 9999 12.766
+7 0.0798376 0 0.383656 0.0526878 0.0758461 0.407972 9999 14.8936
+8 0.0655057 0 0.243624 0 0.034518 0.656352 9999 17.0213
+9 0.105894 0.0282117 0.240794 0.00149688 0.0582062 0.565397 9999 19.1489
+10 0.0698797 0 0.488964 0.265851 0.0477545 0.127551 9999 21.2766
+11 0.0439966 0 0.564941 0.182802 0.0597952 0.148465 9999 23.4043
+12 0.0492833 0 0.31845 0.158785 0.169859 0.303623 9999 25.5319
+13 0.0274611 0 0.493833 0.10911 0.126264 0.243332 9999 27.6596
+14 0.0149757 0 0.607958 0.0783263 0.0881558 0.210585 9999 29.7872
+15 0 0 0.494891 0.00846524 0.172759 0.323884 9999 31.9149
+16 0.0427944 0 0.437804 0.00798603 0.150755 0.360661 9999 34.0426
+17 0.0515198 0 0.483518 0.108374 0.0670624 0.289526 9999 36.1702
+18 0.0330039 0 0.515149 0.0473931 0.12219 0.282264 9999 38.2979
+19 0 0.18956 0.130768 0 0.0366073 0.643064 9999 40.4255
+20 0.0472471 0.137023 0.472552 0.166629 0.037899 0.13865 9999 42.5532
+21 0.0232491 0.0396468 0.409712 0.189267 0.0683615 0.269764 9999 44.6809
+22 0.0274385 0 0.437136 0.128304 0.150562 0.256559 9999 46.8085
+23 0.131617 0.129797 0.158927 0.0625751 0.0248776 0.492206 9999 48.9362
+24 0.0728273 0.0453599 0.371166 0.210412 0.0838065 0.216428 9999 51.0638
+25 0.087957 0 0.277924 0.261978 0.174313 0.197828 9999 53.1915
+26 0.134639 0 0.450939 0.178574 0.155688 0.0801608 9999 55.3191
+27 0.0883791 0.126918 0.422453 0.121023 0.116719 0.124509 9999 57.4468
+28 0.132614 0.0900089 0.389199 0.112725 0.0432524 0.2322 9999 59.5745
+29 0.0154912 0.163626 0.192372 0.174949 0.0205821 0.43298 9999 61.7021
+30 0 0.044494 0.402243 0.251269 0.0234284 0.278565 9999 63.8298
+31 0.0108378 0.0625679 0.306555 0.293705 0.00766875 0.318665 9999 65.9574
+32 0.0293846 0 0.515677 0.19402 0.0553407 0.205578 9999 68.0851
+33 0.0189733 0.0210388 0.411769 0.214995 0.0710859 0.262138 9999 70.2128
+34 0.0748957 0 0.57743 0.170995 0.0516881 0.124991 9999 72.3404
+35 0.105899 0 0.657243 0.0182975 0.0290448 0.189515 9999 74.4681
+36 0.00434992 0.118653 0.227263 0.121593 0.0646483 0.463492 9999 76.5957
+37 0.0685698 0 0.714584 0 0.0197031 0.197143 9999 78.7234
+38 0.0708865 0.122872 0.581186 0.0995042 0.0576055 0.067946 9999 80.8511
+39 0.180696 0.0873133 0.552025 0.0606529 0.0420225 0.0772905 9999 82.9787
+40 0.29128 0.0263096 0.299092 0.0803536 0.0402979 0.262667 9999 85.1064
+41 0.461809 0.015859 0.256867 0.0718785 0.0528366 0.14075 9999 87.234
+42 0.329142 0.0810419 0.28901 0.0801282 0.0611842 0.159493 9999 89.3617
+43 0.225097 0.0867342 0.410272 0.0692932 0.0510383 0.157565 9999 91.4894
+44 0.18569 0.0475174 0.453677 0.0676884 0.0754438 0.169983 9999 93.617
+45 0.235486 0.0502463 0.467799 0.0322226 0.0649296 0.149316 9999 95.7447
+46 0.0265114 0.0593314 0.353537 0.122088 0.0364453 0.402087 9999 97.8723
+47 0.0396754 0.210852 0.235121 0.0608473 0.021875 0.431629 9999 100