Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold4/n10/lora/scoring_support.json

@@ -0,0 +1,67 @@
+{
+  "schema": "pbisc.paper.strict-score-binding.v1",
+  "support_sha256": "71350ef0e193641d9f260d1758377a3de64dc12ad169c130a0293e33711a48ac",
+  "cohort": "immicro",
+  "unit": "fold4_n10",
+  "test_sample_ids": [
+    "HS8",
+    "HS11",
+    "HS20",
+    "HS27",
+    "HS28",
+    "HS41",
+    "HS45",
+    "HS54",
+    "HS64",
+    "HS70",
+    "HS74",
+    "HS75",
+    "HS76",
+    "HS77",
+    "HS87",
+    "HS88",
+    "HS93",
+    "HS94",
+    "HS97",
+    "HS103",
+    "HS104"
+  ],
+  "test_donor_ids": [
+    "HS8",
+    "HS11",
+    "HS20",
+    "HS27",
+    "HS28",
+    "HS41",
+    "HS45",
+    "HS54",
+    "HS64",
+    "HS70",
+    "HS74",
+    "HS75",
+    "HS76",
+    "HS77",
+    "HS87",
+    "HS88",
+    "HS93",
+    "HS94",
+    "HS97",
+    "HS103",
+    "HS104"
+  ],
+  "arm_bindings": {
+    "lora": {
+      "arm": "lora",
+      "npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold4/n10/lora.npz",
+      "npz_sha256": "457eab58d4aead734eb53c43c2cd39bbf12d77ec54f3a936fe1af2bd3d3e1776",
+      "receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold4/n10/lora.log",
+      "receipt_sha256": "cb49b3efc80d96df03074df052e5d9c84a534469a828c810859e544869b2f2b2",
+      "source_binding": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold4/n10/lora/RUN.json",
+      "source_binding_sha256": "9dd47652ef71ffc62f3c52973aa10e5e8646c9947c9d3049796797be0a247835",
+      "condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold4/n10/test_raw.npz",
+      "condition_sha256": "9e0a41119111a870b011b94fad6a53480b59eac0a709c61f0f314f74d8f201b8",
+      "checkpoint_sha256": "08a58442dc001d295ab42ce8fe597bdc5ecb4590f7f7dd80bd0e70694a9f03fd",
+      "support_sha256": "71350ef0e193641d9f260d1758377a3de64dc12ad169c130a0293e33711a48ac"
+    }
+  }
+}

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold4/n5/lora/receipts/score.json

@@ -0,0 +1,52 @@
+{
+  "state": "completed",
+  "stage": "score",
+  "at": "2026-10-15T11:44:12.227523+00:00",
+  "outputs": [
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold4/n5/lora/score/arms/lora/generated_cells.parquet",
+      "sha256": "8d32d9bb7797a555113fa3739b81ac5463121a993bcb8153ba167a67e6fafda0",
+      "bytes": 275105
+    },
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold4/n5/lora/score/arms/lora/labels/labels.manifest.json",
+      "sha256": "a46fa9822673c4f5b360a36858d640d4999685be9b083c3c69c9ae648b0fe80f",
+      "bytes": 5106
+    },
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold4/n5/lora/score/arms/lora/labels/labels.parquet",
+      "sha256": "b67e50a3073c3b1b8d222e767595854a8d699526684c54bcfc4db47799000c6e",
+      "bytes": 788355
+    },
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold4/n5/lora/score/per_donor.csv",
+      "sha256": "2a6fd94b8e9cd051b1942ee2aa9d8dd012312b4fa9d6e83b12a496af21fb21bd",
+      "bytes": 9088
+    },
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold4/n5/lora/score/summary.json",
+      "sha256": "e5a27dcf6b0b840955f4bf0cf096554f6b6344b8dd1a36946910e21cbb89d90f",
+      "bytes": 7547
+    },
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold4/n5/lora/scoring_support.json",
+      "sha256": "ba8f4a8b2631a03c04a5733ce75b4e2901a278c47d31e9f21e1b6e519a245608",
+      "bytes": 2071
+    }
+  ],
+  "support_sha256": "e0c6712ab61af431d22b7cd8aeff0d39b2400e0c266649d045acc42c75889449",
+  "binding": {
+    "arm": "lora",
+    "npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold4/n5/lora.npz",
+    "npz_sha256": "7e785363cbeb12e3c5555ea066da44d02226092e5bc30ade57b741d10727b157",
+    "receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold4/n5/lora.log",
+    "receipt_sha256": "167915de3825ba9a979f6bc30222d9bf53cdb2a823f9861d46ea0b491fa687c0",
+    "source_binding": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold4/n5/lora/RUN.json",
+    "source_binding_sha256": "96597a512cd07411af8984b6b6bb7d13c3846277364f29274ac957eb268592d9",
+    "condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold4/n5/test_raw.npz",
+    "condition_sha256": "9e0a41119111a870b011b94fad6a53480b59eac0a709c61f0f314f74d8f201b8",
+    "checkpoint_sha256": "8d3320844d8f73055af8c81ebbb328eb0eff1d29b646dd3c172ee288982192c0",
+    "support_sha256": "e0c6712ab61af431d22b7cd8aeff0d39b2400e0c266649d045acc42c75889449"
+  },
+  "reuse": {}
+}

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold4/n5/lora/score/per_donor.csv

@@ -0,0 +1,22 @@
+arm,donor,group,n_generated_cells,n_observed_cells,n_reference_cells,gen_T cell,obs_T cell,gen_B cell,obs_B cell,gen_Monocyte,obs_Monocyte,gen_NK cell,obs_NK cell,gen_DC,obs_DC,gen_Other,obs_Other,comp_l1,comp_l1_obs_loo_null,pb_r,pb_own_rank,pb_top1,precision,coverage,precision_depth_matched,coverage_depth_matched,mono_pct_gen,mono_pct_obs,median_umi_gen,median_umi_obs
+lora,HS8,DB1,1500,3652,150,0.6693333333333333,0.6251369112814896,0.07,0.06489594742606791,0.13533333333333333,0.15553121577217963,0.07666666666666666,0.11829134720700986,0.036,0.028477546549835708,0.012666666666666666,0.007667031763417305,0.12364512595837895,0.12540728817026567,0.9063240768792709,4,False,1.0,0.9933333333333333,1.0,0.9933333333333333,13.533333333333333,15.553121577217963,2564.0,1817.0
+lora,HS11,DB6,1500,2886,150,0.6866666666666666,0.6056826056826057,0.07733333333333334,0.061330561330561334,0.15266666666666667,0.24358974358974358,0.05466666666666667,0.04054054054054054,0.017333333333333333,0.04573804573804574,0.011333333333333334,0.0031185031185031187,0.23865557865557863,0.2561903186031127,0.895377784642759,16,False,0.9933333333333333,0.6866666666666666,0.9933333333333333,0.9466666666666667,15.266666666666667,24.358974358974358,2560.0,2216.5
+lora,HS20,DB7,1500,1366,150,0.8233333333333334,0.7657393850658858,0.07066666666666667,0.09882869692532943,0.038,0.08345534407027819,0.038,0.029282576866764276,0.017333333333333333,0.015373352855051245,0.012666666666666666,0.007320644216691069,0.14723474865788191,0.24496652935329646,0.8804149950865269,9,False,0.9933333333333333,0.7466666666666667,1.0,0.9933333333333333,3.8,8.345534407027818,2734.5,2271.0
+lora,HS27,DB2,1500,4030,150,0.7913333333333333,0.6540942928039702,0.08066666666666666,0.11464019851116625,0.05,0.1196029776674938,0.052,0.0890818858560794,0.015333333333333332,0.015632754342431762,0.010666666666666666,0.006947890818858561,0.2819156327543424,0.09660813635321817,0.890224020686464,5,False,0.9933333333333333,0.9866666666666667,0.9933333333333333,0.9933333333333333,5.0,11.96029776674938,2486.5,1575.5
+lora,HS28,DB5,1500,4446,150,0.6906666666666667,0.594017094017094,0.08933333333333333,0.12010796221322537,0.12533333333333332,0.1545209176788124,0.058,0.11156095366621682,0.024,0.015744489428699954,0.012666666666666666,0.004048582995951417,0.22704633378317587,0.16876902964084625,0.887428860236567,19,False,0.98,0.5533333333333333,0.98,0.9266666666666666,12.533333333333333,15.45209176788124,2401.0,1941.5
+lora,HS41,DB7,1500,1392,150,0.7193333333333334,0.6458333333333334,0.11266666666666666,0.15589080459770116,0.10266666666666667,0.14152298850574713,0.04,0.035201149425287355,0.02,0.014367816091954023,0.005333333333333333,0.007183908045977011,0.16786206896551728,0.15926025034557173,0.8851798825432418,16,False,0.9933333333333333,0.7733333333333333,0.9933333333333333,0.9933333333333333,10.266666666666667,14.152298850574713,2485.5,2276.0
+lora,HS45,DB7,1500,1980,150,0.728,0.6646464646464646,0.072,0.08333333333333333,0.128,0.1191919191919192,0.03933333333333333,0.10606060606060606,0.020666666666666667,0.022727272727272728,0.012,0.00404040404040404,0.1602424242424243,0.0677355126799284,0.8896129444567639,11,False,1.0,0.6066666666666667,0.9866666666666667,0.9666666666666667,12.8,11.91919191919192,2781.5,2373.5
+lora,HS54,DB3,1500,5391,150,0.858,0.7853830458171026,0.05466666666666667,0.06362455945093674,0.019333333333333334,0.0849564088295307,0.05333333333333334,0.037655351511778894,0.008,0.02485624188462252,0.006666666666666667,0.003524392506028566,0.1828744203301799,0.2552556292322815,0.8893599235083679,2,False,1.0,0.9133333333333333,1.0,0.9866666666666667,1.9333333333333333,8.49564088295307,2993.0,2188.0
+lora,HS64,DB2,1500,3894,150,0.704,0.6592193117616847,0.07133333333333333,0.0968156137647663,0.13133333333333333,0.13071391884951206,0.056,0.0901386748844376,0.028,0.01848998459167951,0.009333333333333334,0.004622496147919877,0.11924191063174105,0.05832869885289772,0.9063511975347605,6,False,0.9933333333333333,0.9866666666666667,1.0,1.0,13.133333333333333,13.071391884951206,3050.0,1596.0
+lora,HS70,DB4,1500,4513,150,0.7786666666666666,0.6470197208065588,0.062,0.10104143585198316,0.072,0.11766009306448039,0.051333333333333335,0.10857522712164858,0.02,0.020385552847329937,0.016,0.005317970307999114,0.28465795110421743,0.10591968493419628,0.8775006223910723,13,False,0.96,0.5466666666666666,0.9466666666666667,0.98,7.199999999999999,11.766009306448039,2702.0,2181.0
+lora,HS74,DB5,1500,4719,150,0.7866666666666666,0.6753549480822209,0.048666666666666664,0.08645899554990465,0.05533333333333333,0.101716465352829,0.07266666666666667,0.11337147700784064,0.017333333333333333,0.018648018648018648,0.019333333333333334,0.004450095359186269,0.2523899131171858,0.10081092655634422,0.873718573652341,14,False,0.98,0.6,0.98,0.94,5.533333333333333,10.1716465352829,2324.5,1934.0
+lora,HS75,DB6,1500,2126,150,0.7373333333333333,0.6933207902163687,0.06933333333333333,0.07572906867356538,0.09866666666666667,0.15851364063969897,0.066,0.04280338664158043,0.015333333333333332,0.023518344308560677,0.013333333333333334,0.0061147695202257765,0.14885544057698338,0.08535715114862408,0.8891830891117593,10,False,0.9933333333333333,0.78,0.98,0.98,9.866666666666667,15.851364063969896,2651.0,2141.5
+lora,HS76,DB1,1500,3892,150,0.682,0.5775950668036999,0.086,0.10405960945529291,0.10866666666666666,0.1593011305241521,0.07133333333333333,0.10251798561151079,0.03866666666666667,0.04290853031860226,0.013333333333333334,0.013617677286742035,0.2088098663926003,0.1898535091893846,0.9015712720097246,3,False,0.9933333333333333,0.9933333333333333,0.9866666666666667,1.0,10.866666666666665,15.93011305241521,2607.5,1764.0
+lora,HS77,DB2,1500,3662,150,0.6586666666666666,0.6826870562534134,0.042666666666666665,0.0488803932277444,0.18866666666666668,0.1851447296559257,0.08066666666666666,0.06499180775532495,0.02266666666666667,0.012015292190060076,0.006666666666666667,0.006280720917531403,0.060468232295649064,0.11335529711104537,0.9076413369678145,4,False,0.9866666666666667,0.9733333333333334,1.0,1.0,18.866666666666667,18.51447296559257,2659.5,1437.0
+lora,HS87,DB5,1500,4067,150,0.7453333333333333,0.6801081878534546,0.08,0.08409146791246619,0.08466666666666667,0.12490779444307844,0.056666666666666664,0.10154905335628227,0.02266666666666667,0.007376444553725104,0.010666666666666666,0.001967051880993361,0.1784299647569871,0.08099383236904187,0.8867988760987611,17,False,1.0,0.6666666666666666,0.9866666666666667,0.9466666666666667,8.466666666666667,12.490779444307844,2530.0,1983.0
+lora,HS88,DB3,1500,5093,150,0.6733333333333333,0.6540349499312782,0.058,0.040054977419988216,0.15133333333333332,0.20400549774199883,0.08066666666666666,0.0738268211270371,0.029333333333333333,0.02297270763793442,0.007333333333333333,0.005105046141763205,0.10534432881733105,0.12525619231261487,0.9108597667350626,6,False,0.9733333333333334,0.9333333333333333,0.9933333333333333,1.0,15.133333333333333,20.400549774199884,2988.0,2032.0
+lora,HS93,DB1,1500,5125,150,0.8006666666666666,0.7139512195121951,0.06133333333333333,0.08253658536585366,0.06666666666666667,0.13873170731707318,0.037333333333333336,0.041951219512195125,0.024666666666666667,0.016975609756097562,0.009333333333333334,0.005853658536585366,0.19577235772357723,0.09891727748742493,0.90384018187488,1,True,0.9933333333333333,0.9933333333333333,1.0,0.9933333333333333,6.666666666666667,13.873170731707319,3015.5,1873.0
+lora,HS94,DB3,1500,4273,150,0.808,0.7343786566814884,0.054,0.038380528902410484,0.056666666666666664,0.1352679616194711,0.04933333333333333,0.06763398080973555,0.018,0.019424292066463844,0.014,0.004914579920430611,0.1966524689913411,0.13939202955397142,0.8964449684200235,1,True,0.9933333333333333,0.92,0.9866666666666667,0.9933333333333333,5.666666666666666,13.52679616194711,2752.0,2305.0
+lora,HS97,DB4,1500,4609,150,0.7533333333333333,0.7179431546973313,0.06733333333333333,0.0414406595790844,0.10666666666666667,0.16294206986331092,0.03866666666666667,0.05467563462790193,0.020666666666666667,0.018876111954870906,0.013333333333333334,0.004122369277500542,0.14456874231575903,0.13910150857913614,0.8825718409584672,16,False,0.98,0.6066666666666667,0.9933333333333333,0.94,10.666666666666668,16.29420698633109,2427.0,2171.0
+lora,HS103,DB6,1500,2442,150,0.7253333333333334,0.5941850941850941,0.086,0.0819000819000819,0.08733333333333333,0.1601146601146601,0.07066666666666667,0.14004914004914004,0.020666666666666667,0.01760851760851761,0.01,0.006142506142506142,0.2843276003276004,0.16148029017475643,0.8892133400561695,11,False,0.98,0.72,0.9866666666666667,0.96,8.733333333333333,16.01146601146601,2373.0,2156.5
+lora,HS104,DB4,1500,4870,150,0.6953333333333334,0.657700205338809,0.06133333333333333,0.07268993839835729,0.15533333333333332,0.19815195071868583,0.050666666666666665,0.05626283367556468,0.032,0.012320328542094456,0.005333333333333333,0.002874743326488706,0.11954277891854898,0.10816478298818209,0.8915968269105234,14,False,0.98,0.6866666666666666,0.9866666666666667,0.9533333333333334,15.533333333333331,19.815195071868583,2608.5,2025.5

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold4/n5/lora/score/summary.json

@@ -0,0 +1,211 @@
+{
+ "schema": "paired_ft_scores.v1",
+ "dataset": "immicro",
+ "written_utc": "2026-10-15T11:44:12.222681+00:00",
+ "command": [
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py",
+  "--dataset",
+  "immicro",
+  "--out",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold4/n5/lora/score",
+  "--donors",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold4/n5/lora/test_sample_ids.txt",
+  "--threads",
+  "2",
+  "--arm",
+  "lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold4/n5/lora.npz",
+  "--no-contrast",
+  "--no-deg"
+ ],
+ "arms": [
+  "lora"
+ ],
+ "donors": [
+  "HS8",
+  "HS11",
+  "HS20",
+  "HS27",
+  "HS28",
+  "HS41",
+  "HS45",
+  "HS54",
+  "HS64",
+  "HS70",
+  "HS74",
+  "HS75",
+  "HS76",
+  "HS77",
+  "HS87",
+  "HS88",
+  "HS93",
+  "HS94",
+  "HS97",
+  "HS103",
+  "HS104"
+ ],
+ "n_donors": 21,
+ "reference": {
+  "cache": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/immicro",
+  "reference_sha256": "c5e2547be3ec3b12cb0c0b404a49e14a046ae59d40be70427f98f083a76bce17",
+  "features_sha256": "735255066ce7ebbac13a1fdfd058e26f31edd60314cc02fd589b0a292dbbc838",
+  "n_r1_cells": 3150,
+  "pca": {
+   "n_components": 50,
+   "explained_variance_ratio_sum": 0.29251348972320557,
+   "n_fit_cells": 3150
+  },
+  "r2_control": {
+   "precision": 0.9946031746031746,
+   "coverage": 1.0,
+   "density": 2.7306349206349205,
+   "n_query": 3150,
+   "depth_matched": {
+    "precision": 0.9949206349206349,
+    "coverage": 1.0,
+    "density": 2.6846666666666668
+   }
+  },
+  "observed_l1_loo_null_mean": 0.13719637503029242
+ },
+ "contrast_definition": {
+  "enabled": false,
+  "reason": "--no-contrast"
+ },
+ "deg_definition": {
+  "enabled": false,
+  "reason": "--no-deg"
+ },
+ "headline": {
+  "lora": {
+   "comp_l1": 0.18231132806271436,
+   "comp_l1_obs_loo_null": 0.13719637503029242,
+   "precision": 0.9885714285714285,
+   "coverage": 0.7936507936507936,
+   "precision_dm": 0.9892063492063492,
+   "coverage_dm": 0.9755555555555555,
+   "pb_r_median": 0.8896129444567639,
+   "pb_top1": 0.09523809523809523,
+   "mono_pct_gen": 10.06984126984127,
+   "mono_pct_obs": 14.664491120050386,
+   "median_umi_gen": 2642.0,
+   "median_umi_obs": 1973.0,
+   "seconds": 11.1
+  }
+ },
+ "per_arm": {
+  "lora": {
+   "arm": "lora",
+   "npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold4/n5/lora.npz",
+   "npz_sha256": "7e785363cbeb12e3c5555ea066da44d02226092e5bc30ade57b741d10727b157",
+   "receipt_verified": true,
+   "generation": {
+    "checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold4/n5/lora/checkpoint_ft.pt",
+    "checkpoint_sha256": "8d3320844d8f73055af8c81ebbb328eb0eff1d29b646dd3c172ee288982192c0",
+    "input_condition_path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold4/n5/test_raw.npz",
+    "input_condition_sha256": "9e0a41119111a870b011b94fad6a53480b59eac0a709c61f0f314f74d8f201b8",
+    "seed": 20260928,
+    "steps": 50,
+    "support_readout": "bernoulli",
+    "weights": "ema"
+   },
+   "condition_for_broadcast": null,
+   "poisson": {
+    "seed": 20260916,
+    "rule": "whole NPZ, rows in NPZ order",
+    "nnz_whole_npz": 8396403,
+    "median_library_whole_npz_panel": 2643.0,
+    "n_rows_whole_npz": 31500
+   },
+   "annotation": {
+    "model_pt_sha256": "bf3655899e5abee435340fc008656c4a17342da0f30b70cfd43de8e9223e1930",
+    "zero_padded_model_genes": 1,
+    "label_counts": {
+     "T cell": 23273,
+     "Monocyte": 3172,
+     "B cell": 2213,
+     "NK cell": 1791,
+     "DC": 703,
+     "Other": 348
+    },
+    "mean_l2_max_prob": 0.9073981458691377,
+    "predict_seconds": 5.5
+   },
+   "n_donors": 21,
+   "n_generated_cells": 31500,
+   "composition": {
+    "l1_mean": 0.18231132806271436,
+    "l1_median": 0.1784299647569871,
+    "l1_obs_loo_null_mean": 0.13719637503029242,
+    "l1_generated_loo_mean_vs_observed_mean": 0.1979390286277884,
+    "composition_top1": 0.047619047619047616,
+    "mean_fraction_generated": {
+     "T cell": 0.738825,
+     "B cell": 0.070254,
+     "Monocyte": 0.100698,
+     "NK cell": 0.056857,
+     "DC": 0.022317,
+     "Other": 0.011048
+    },
+    "mean_fraction_observed": {
+     "T cell": 0.668001,
+     "B cell": 0.081749,
+     "Monocyte": 0.146645,
+     "NK cell": 0.07743,
+     "DC": 0.020687,
+     "Other": 0.005487
+    }
+   },
+   "pseudobulk": {
+    "n_genes": 5508,
+    "r_median": 0.8896129444567639,
+    "r_mean": 0.8924387800362533,
+    "top1": 0.09523809523809523,
+    "n_top1": 2,
+    "own_rank_median": 10.0,
+    "chance_top1": 0.047619047619047616
+   },
+   "precision_coverage": {
+    "precision": 0.9885714285714285,
+    "coverage": 0.7936507936507936,
+    "density": 2.423047619047619,
+    "n_query": 3150,
+    "n_reference": 3150
+   },
+   "precision_coverage_depth_matched": {
+    "precision": 0.9892063492063492,
+    "coverage": 0.9755555555555555,
+    "density": 4.135460317460318,
+    "detected_median_before": {
+     "R1": 359.0,
+     "Q": 257.0
+    },
+    "detected_median_after": {
+     "R1": 257.0,
+     "Q": 257.0
+    }
+   },
+   "monocyte_pct": {
+    "generated_mean_over_donors": 10.06984126984127,
+    "observed_mean_over_donors": 14.664491120050386,
+    "generated_pooled_cells": 10.06984126984127
+   },
+   "median_umi_per_cell_scoring_genes": {
+    "generated_pooled": 2642.0,
+    "observed_pooled": 1973.0,
+    "generated_mean_of_donor_medians": 2652.119140625,
+    "observed_mean_of_donor_medians": 2012.3095238095239
+   },
+   "seconds": 11.1
+  }
+ },
+ "code_sha256": {
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/ft_common.py": "4a6366b0f22208cd58714fc0261b8840c643b9d4569704d560cfd93534cbc747",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/umap/cell_immicro_5arm/tools/stage_b_embed.py": "d056cfdf38fb0e5f478756f370174e993b75d0c973c48e02e21749175a4ca2da",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/bulk2sc-paper/scripts/evaluate_generated_vs_truth.py": "48b12d794782b840838853e93e0fc55fab00532c4b3698f4588e926b985d2881",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/immicro/tools/immicro_common.py": "c5c30e917148cc5e664e91ea30c11bbdff9b6d1f53a3e0a13e16b1917eff37e9",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/predict_scanvi.py": "482ee5dcf4d72b54bc36cbb6dcff62e5030bc7afc46cb5fb01eca73a82ee45a5",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/poisson_readout.py": "8bfa080942fbcdc89ae23b276524a1a83266fb8cbc56b9af279e50f82e6cde38"
+ },
+ "seconds": 13.9
+}