Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/lora3k4_raw_s13/rule_A/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+lora3k4_raw_s13,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.2165317332279459,0.21889692533226487,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.07294570456984611,0.02431523485661537,0.07290046163935704,0.09573919346099626,0.3395638212071894,0.1604607011001304,0.2726027653557614
+lora3k4_raw_s13,BD,ifng_response_log2fc_high_vs_other,-0.3238971760609506,-0.3435540888273607,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.190060840543136,0.06335361351437867,0.3239430772119014,-0.6084578665440029,-0.018691948131044266,-0.46999087080523433,-0.17780348131666684
+lora3k4_raw_s13,BD,ifng_response_c1q_high_minus_other,0.08524459962140124,0.08185215137384161,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.013745789037273278,0.004581929679091093,0.012205911484420351,0.06281113508685193,0.11179620459261777,0.07467865083420248,0.0958105484086
+lora3k4_raw_s13,BD,proinflammatory_log2fc_bgcorr_high_vs_other,-0.03430517877080827,-0.047128886343830376,0.3333333333333333,-0.3333333333333333,0.203125,9,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.06697766905975486,0.022325889686584954,0.10721755377952376,-0.11605259502353563,0.08047365185607276,-0.0857887727101852,0.01717841516856867
+lora3k4_raw_s13,BD,proinflammatory_log2fc_high_vs_other,-0.4490096803754493,-0.40645556002875616,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.12430418430708572,0.04143472810236191,0.19837784642188816,-0.6550565654420809,-0.30967358454360394,-0.5445583347205561,-0.35346102603034246
+lora3k4_raw_s13,BD,proinflammatory_c1q_high_minus_other,0.009400329175119697,0.007335765851324116,0.8888888888888888,0.7777777777777778,0.01171875,9,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.00792575881556357,0.0026419196051878564,0.012319359639628547,-0.00040723161787670215,0.021442278420300304,0.0033080516406795435,0.015492606709559851
+lora3k4_raw_s13,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.23405413896627403,0.25305484022041563,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.05138468944090582,0.017128229813635275,0.09802867047141287,0.16570873624448657,0.2895649111121892,0.19455637018730382,0.27355190774524424
+lora3k4_raw_s13,BD,phagocytosis_antigen_log2fc_high_vs_other,-0.22163091287143843,-0.2063695886526385,0.0,-1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.128133494722377,0.042711164907459,0.20372627681327138,-0.46558069281954373,-0.0621093756033873,-0.32012303576742596,-0.12313878997545093
+lora3k4_raw_s13,BD,phagocytosis_antigen_c1q_high_minus_other,0.10831009097450857,0.10711730909924733,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.0098051462275595,0.0032683820758531664,0.015271875175378202,0.09492051228411535,0.12180782605211765,0.100773188392164,0.11584699355685314
+lora3k4_raw_s13,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.1397210048798994,0.9502896504179441,1.0,1.0,0.00390625,9,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.333550017172978,0.11118333905765933,0.38611529266888245,0.8041094270004152,1.7858710932195438,0.8833317652471301,1.3961102445126685
+lora3k4_raw_s13,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.8731590806155977,0.8403501700250873,1.0,1.0,0.00390625,9,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.2579023792009538,0.08596745973365127,0.4117679408332112,0.5873376340367434,1.316654080992318,0.6749177629768002,1.0714003982543951
+lora3k4_raw_s13,BD,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.6720962222111181,0.6732434890630721,1.0,1.0,0.00390625,9,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.09022427929691473,0.030074759765638243,0.12714424276186898,0.5678099602386848,0.8516066742192454,0.6027437018262845,0.7414487425959517
+lora3k4_raw_s13,HC,ifng_response_log2fc_bgcorr_high_vs_other,0.2535238442733919,0.2346245222545954,0.9,0.8,0.00390625,10,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.1724685592621262,0.05453934720360479,0.18813803981552385,-0.10859316851294024,0.4675717900880366,0.1301472693424191,0.37690041920436473
+lora3k4_raw_s13,HC,ifng_response_log2fc_high_vs_other,-0.8198616480729776,-0.7607501947170565,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.3362008041583734,0.10631602923206684,0.548868475714474,-1.2609531290045946,-0.32569773539473934,-1.060365215120561,-0.5793580810253942
+lora3k4_raw_s13,HC,ifng_response_c1q_high_minus_other,0.09884555998344366,0.09436076159377219,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.01650048556865652,0.005217911689569325,0.012861928370877226,0.07685253079406099,0.1362665076609479,0.08704182368003593,0.11064929628685138
+lora3k4_raw_s13,HC,proinflammatory_log2fc_bgcorr_high_vs_other,-0.005699236648030928,0.05247406035867122,0.6,0.2,0.76953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.2070309426771215,0.06546893249914616,0.18904390150172695,-0.39000113404283426,0.24626135419679976,-0.1538002512417266,0.14240177794566475
+lora3k4_raw_s13,HC,proinflammatory_log2fc_high_vs_other,-0.7547444571687211,-0.7379857758629966,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.2326919376425222,0.07358365161082414,0.28321609299879247,-1.2129245943780054,-0.4195790887087924,-0.9212022417249945,-0.5882866726124476
+lora3k4_raw_s13,HC,proinflammatory_c1q_high_minus_other,0.013092303189179436,0.019273583457068186,0.7,0.4,0.048828125,10,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.01656260925484951,0.005237556924070865,0.022017778789037275,-0.02078910038637921,0.02856039074506636,0.0012441262778291953,0.024940480100529676
+lora3k4_raw_s13,HC,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.3426526359981283,0.32441742873614965,1.0,1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.08774078251189964,0.027746071642307264,0.09396365604653156,0.24401874831537335,0.5379775868808088,0.27988666129297074,0.40541861070328583
+lora3k4_raw_s13,HC,phagocytosis_antigen_log2fc_high_vs_other,-0.5481119523839261,-0.5579174769193531,0.0,-1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.1428049746184677,0.04515889809968928,0.16650608257304178,-0.7817120054763447,-0.2774216322656465,-0.6502684771842124,-0.4459554275836397
+lora3k4_raw_s13,HC,phagocytosis_antigen_c1q_high_minus_other,0.12279874322067368,0.12467631919616387,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.02061076569897168,0.006517696392882285,0.031666068551331916,0.09581638032262713,0.15762117193565517,0.108054689640571,0.13754279680077636
+lora3k4_raw_s13,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,1.4203218123867771,1.3984181925142227,1.0,1.0,0.001953125,10,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.20202946380504008,0.06388732600864744,0.30176504799210147,1.1677287788609532,1.7344939484222872,1.2757986402442913,1.564844984529263
+lora3k4_raw_s13,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.7499019647033068,0.760249395655605,1.0,1.0,0.001953125,10,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.2640201340441439,0.08349049717224571,0.31238145280735097,0.17083156487861212,1.043435119354268,0.5610333384995279,0.9387705909070858
+lora3k4_raw_s13,HC,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.7724649085778302,0.7666808973046665,1.0,1.0,0.001953125,10,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.07270970280228148,0.022992826884913692,0.10244936871021793,0.6382267891824445,0.8620078253086525,0.7204515205471436,0.8244782966085169

paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/lora3k4_raw_s13/rule_A/sample.csv

@@ -0,0 +1,20 @@
+cohort,sample_id,group,source,n_monocytes,n_c1q_high,c1q_high_fraction,ifng_response_mean_c1q_high,ifng_response_mean_other,ifng_response_c1q_high_minus_other,proinflammatory_mean_c1q_high,proinflammatory_mean_other,proinflammatory_c1q_high_minus_other,phagocytosis_antigen_mean_c1q_high,phagocytosis_antigen_mean_other,phagocytosis_antigen_c1q_high_minus_other,ifng_response_log2fc_bgcorr_high_vs_other,proinflammatory_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,ifng_response_log2fc_high_vs_other,proinflammatory_log2fc_high_vs_other,phagocytosis_antigen_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_mean_c1q_high,phagocytosis_antigen_mhcii_fcgr_mean_other,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,background_log2fc_all_genes
+lora3k4_raw_s13,BDU1,BD,generated,792,42,0.05303030303030303,0.32963792651938606,0.24099478352067952,0.08864314299870654,0.18004509279419104,0.15860281437389073,0.021442278420300304,0.5474318874880725,0.4256240614359548,0.12180782605211765,0.1618625483033621,-0.013602423628989616,0.2758410231588391,1.3057689439819593,-0.34051114989732867,-0.40645556002875616,-0.2063695886526385,1.0252143775574334,1.9084443328241179,1.183831219119603,0.7246131137045149,-0.2898454082666253
+lora3k4_raw_s13,BDU2,BD,generated,600,20,0.03333333333333333,0.34152538558097195,0.26000173675690014,0.08152364882407181,0.16321856768601148,0.16362579930388818,-0.00040723161787670215,0.5471374245217381,0.4522169122376227,0.09492051228411535,0.2292858405215234,-0.06021488644929362,0.2232866660472696,1.280582421001362,-0.6084578665440029,-0.6550565654420809,-0.46558069281954373,0.885814157541979,1.9004143216483445,1.2271708325852724,0.6732434890630721,-0.47958866129297406
+lora3k4_raw_s13,BDU3,BD,generated,873,46,0.052691867124856816,0.34896801063926797,0.28615687555241603,0.06281113508685193,0.19307075143294486,0.17590880250385202,0.01716194892909284,0.5397701954882174,0.4397320899053183,0.10003810558289905,0.3395638212071894,0.08047365185607276,0.2895649111121892,0.8264857593050368,-0.13922778154321266,-0.30967358454360394,-0.10559769198440322,0.6134464367242222,1.7756006333156977,1.2071435884339874,0.5684570448817103,-0.2712467211968574
+lora3k4_raw_s13,BDV1,BD,generated,900,66,0.07333333333333333,0.3657626777921832,0.2863779248809027,0.0793847529112805,0.19368938892443396,0.17693476067451572,0.016754628249918246,0.5429093221475815,0.4427938834960355,0.10011543865154598,0.2962325424230513,-0.10303588445356109,0.16970222681270883,0.9502896504179441,-0.018691948131044266,-0.3704876927625502,-0.11596370580945686,0.8309806087345117,1.8333700562310116,1.239463908123049,0.5939061481079626,-0.1896826026938437
+lora3k4_raw_s13,BDV2,BD,generated,800,55,0.06875,0.3504813806860701,0.27546456489002974,0.07501681579604036,0.1694966319557017,0.16910322999152252,0.0003934019641791686,0.5455447915423534,0.4445940437531705,0.10095074778918284,0.09573919346099626,-0.11605259502353563,0.16570873624448657,0.8041094270004152,-0.3435540888273607,-0.46200444212021263,-0.22100113317185457,0.5873376340367434,1.8386492543821298,1.270839294143445,0.5678099602386848,-0.24329996129306894
+lora3k4_raw_s13,BDV3,BD,generated,804,36,0.04477611940298507,0.3496527338592487,0.2550698532457489,0.09458288061349984,0.17306632058646035,0.1600735158785093,0.012992804707951056,0.5558329392413117,0.44052902849414005,0.11530391074717167,0.2094938883635494,0.03074195468962293,0.2892613829987164,1.441876783749936,-0.373673542615097,-0.38238596644823747,-0.17710482383399437,1.1622168206244228,1.8421901688399411,1.1697088777690032,0.6724812910709379,-0.331279268490314
+lora3k4_raw_s13,BDV4,BD,generated,678,35,0.051622418879056046,0.35030753537000336,0.2587168709743025,0.09159066439570085,0.16312304803361377,0.15862895057271523,0.004494097460898544,0.5627606390932763,0.44737332526635215,0.11538731382692419,0.1624051889001096,-0.0935725466816418,0.17781235268742626,0.9196536513130769,-0.48028893547600326,-0.5688655391844384,-0.31968998262272824,0.5964174393036611,1.9709342218668435,1.249883830997012,0.7210503908698316,-0.36273709207927435
+lora3k4_raw_s13,BDV5,BD,generated,937,54,0.0576307363927428,0.3602325926254365,0.2783804412515949,0.08185215137384161,0.1936865117241531,0.1892512431138634,0.0044352686102897,0.5369363405792271,0.4298190314799798,0.10711730909924733,0.23530565053946664,0.013645007097881951,0.25305484022041563,0.9428513139298201,-0.14336309715130216,-0.3113168639548247,-0.0621093756033873,0.8403501700250873,1.873229110642467,1.197531222898364,0.6756978877441031,-0.2241780784380311
+lora3k4_raw_s13,BDV6,BD,generated,1027,32,0.0311587147030185,0.35169841788560974,0.23990221329299197,0.11179620459261777,0.17013707830337652,0.1628013124520524,0.007335765851324116,0.5180728456660383,0.39892319092866513,0.11914965473737316,0.21889692533226487,-0.047128886343830376,0.2622551114144149,1.7858710932195438,-0.46730617436320354,-0.5748409088943397,-0.32126122134493906,1.316654080992318,1.949170240904512,1.0975635666852666,0.8516066742192454,-0.3820353803447626
+lora3k4_raw_s13,HC1,HC,generated,842,17,0.020190023752969122,0.32135338566146965,0.22646359818156359,0.09488978747990606,0.17670212783551187,0.1533543081705426,0.023347819664969266,0.5425842865727063,0.41028140885887404,0.13230287771383226,-0.10859316851294024,0.07735026532757118,0.3237708777302573,1.340001541332226,-1.1640375093568978,-0.6933902025195858,-0.5792987438733906,0.7361465819702251,1.8561273664907816,1.1221674737013811,0.7339598927894004,-0.6069790043696128
+lora3k4_raw_s13,HC10,HC,generated,618,24,0.038834951456310676,0.35847123696064465,0.24464395747908263,0.11382727948156202,0.18403315202402906,0.15935470819442502,0.024678443829604046,0.5239728236613314,0.42326739684013487,0.10070542682119649,0.4675717900880366,0.11063739431810356,0.2469181350444785,1.2467626873738542,-0.32569773539473934,-0.4195790887087924,-0.41837662796235997,0.7172701303109542,1.8441876426529575,1.1375945835677506,0.706593059085207,-0.4332742207631436
+lora3k4_raw_s13,HC2,HC,generated,664,21,0.03162650602409638,0.32872448888376826,0.2379232208438074,0.09080126803996086,0.1559977484449369,0.16011209928459627,-0.004114350839659359,0.5059795137369797,0.41016313341435257,0.09581638032262713,0.3969709947960371,-0.04910207573163761,0.325063979742042,1.1960672983077334,-0.588551485505472,-0.7825813492064074,-0.5365362099653155,0.6300922038513983,1.8821509037727273,1.1443151128552729,0.7378357909174544,-0.5470013541503902
+lora3k4_raw_s13,HC3,HC,generated,467,12,0.02569593147751606,0.33833384248726706,0.24721958957986423,0.09111425290740283,0.18226850924086993,0.15370811849580357,0.02856039074506636,0.5674880753952467,0.43448701562943315,0.13300105976581356,0.429412514895331,0.24626135419679976,0.37930493814032973,1.7344939484222872,-0.8575118741964408,-0.64131190699676,-0.6677739803985231,0.861378494873283,1.9207661107329341,1.162285901803062,0.7584802089298721,-0.6781545063872085
+lora3k4_raw_s13,HC4,HC,generated,770,32,0.04155844155844156,0.3463870719085479,0.24907722730089388,0.09730984460765402,0.1618083767570433,0.16339069948829138,-0.001582322731248087,0.5498017213258646,0.4327519606473691,0.11704976067849548,0.25202137757118115,-0.0559916650872077,0.3229229107744587,1.4568348436962195,-0.49383264554677253,-0.5800932507431278,-0.2774216322656465,1.043435119354268,1.9546436480489375,1.1492105028674042,0.8054331451815333,-0.4127464930446622
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paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/lora3k4_raw_s13/rule_B/group.csv

@@ -0,0 +1,25 @@
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paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/lora3k4_raw_s13/rule_B/sample.csv

@@ -0,0 +1,20 @@
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