Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/obs_thin_lora3k4/rule_A/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+obs_thin_lora3k4,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.15715328289718988,0.14370248630767413,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.051780375935338484,0.025890187967669242,0.047227068156926205,0.1112485037819655,0.2299596551914457,0.0747591498563802,0.23954741593799955
+obs_thin_lora3k4,BD,ifng_response_log2fc_high_vs_other,-0.13051198620933357,-0.13048804551718746,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.03678005352439473,0.018390026762197365,0.04576956552297555,-0.17243269414979562,-0.08863915965316378,-0.18903725893275708,-0.07198671348591007
+obs_thin_lora3k4,BD,ifng_response_c1q_high_minus_other,0.08581950519738223,0.08703819725739281,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.017658191351498865,0.008829095675749432,0.015305436952896309,0.06326569658744735,0.10593592968729593,0.057721382285097086,0.11391762810966737
+obs_thin_lora3k4,BD,proinflammatory_log2fc_bgcorr_high_vs_other,-0.10805799650724325,-0.11161454009125277,0.0,-1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.07853200240520822,0.03926600120260411,0.051624770502817205,-0.20052128139622447,-0.008481624450243008,-0.23301993695773632,0.016903943943249816
+obs_thin_lora3k4,BD,proinflammatory_log2fc_high_vs_other,-0.3654903309773711,-0.32944091258328334,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.09007270355280157,0.045036351776400786,0.0762410029494523,-0.4975400179739412,-0.3055394807689764,-0.5088161022916351,-0.22216455966310708
+obs_thin_lora3k4,BD,proinflammatory_c1q_high_minus_other,0.00914037639074753,0.008768151038142852,0.75,0.5,0.25,4,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.008974571605135323,0.004487285802567661,0.008390495508215835,-0.001283579419840808,0.020308782906545225,-0.005140169732385961,0.02342092251388102
+obs_thin_lora3k4,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.17695159553793266,0.17540634938443805,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.05547604729577549,0.027738023647887744,0.08747258707342004,0.12364020855183724,0.23335347483101732,0.08867682466384019,0.2652263664120251
+obs_thin_lora3k4,BD,phagocytosis_antigen_log2fc_high_vs_other,-0.08348895961683049,-0.07258582650621674,0.25,-0.5,0.25,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.08200476856159376,0.04100238428079688,0.06507543409344532,-0.19308064372975703,0.004296458274868499,-0.2139768459790753,0.046998926745414324
+obs_thin_lora3k4,BD,phagocytosis_antigen_c1q_high_minus_other,0.09600706251265204,0.09323055983181477,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.013678282873756813,0.006839141436878407,0.01596460829109772,0.08346835245974338,0.11409877792723522,0.07424186211554565,0.11777226290975842
+obs_thin_lora3k4,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,0.8937834744592843,0.7544459445452056,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.31629858876318595,0.15814929438159298,0.23590971688099294,0.7029578792395398,1.3632841295071858,0.3904818368713583,1.3970851120472103
+obs_thin_lora3k4,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.7332903510547912,0.6265629759002371,1.0,1.0,0.125,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.31384319049830817,0.15692159524915408,0.2476158039832057,0.48983615407349534,1.1901992983451954,0.2338958000348954,1.232684902074687
+obs_thin_lora3k4,BD,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.570860709544772,0.5352432019479597,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.08362921901763089,0.041814609508815444,0.0512072252725968,0.517406477322649,0.6955499569605192,0.4377879600065613,0.7039334590829827
+obs_thin_lora3k4,HC,ifng_response_log2fc_bgcorr_high_vs_other,0.1825138227673539,0.08207672400718174,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.21742038726506557,0.10871019363253279,0.11809338290892232,0.05774252032308244,0.5081593227319696,-0.1634505313051765,0.5284781768398843
+obs_thin_lora3k4,HC,ifng_response_log2fc_high_vs_other,-0.2724799058923688,-0.2833402274186602,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.12073649877588906,0.06036824938794453,0.1734243345258063,-0.3892544061063789,-0.13398476262577583,-0.46459861811347836,-0.0803611936712593
+obs_thin_lora3k4,HC,ifng_response_c1q_high_minus_other,0.10320487891818333,0.10906692602893633,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.03754730484549531,0.018773652422747655,0.04221172534981732,0.0542606693209145,0.14042499429394617,0.04345873812872953,0.16295101970763715
+obs_thin_lora3k4,HC,proinflammatory_log2fc_bgcorr_high_vs_other,-0.13903455943366008,-0.19678810941105931,0.25,-0.5,0.375,4,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.19319870393941604,0.09659935196970802,0.2307836952187702,-0.2862202926598195,0.12365827374729775,-0.44645681020245787,0.16838769133513767
+obs_thin_lora3k4,HC,proinflammatory_log2fc_high_vs_other,-0.5548411726853553,-0.5767911870641476,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.1812176010384976,0.0906088005192488,0.2075407888591666,-0.7416122505648908,-0.324170066048235,-0.8431988151240271,-0.2664835302466834
+obs_thin_lora3k4,HC,proinflammatory_c1q_high_minus_other,0.028980679787566112,0.02899813139765471,0.75,0.5,0.25,4,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.027624577874777585,0.013812288937388792,0.03324031994148368,-0.0028331362978797348,0.06075959265283476,-0.014976188108737881,0.0729375476838701
+obs_thin_lora3k4,HC,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.10645374542600766,0.13515330561242,0.75,0.5,0.25,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.10676561156066848,0.05338280578033424,0.1284333758950471,-0.03719426928265279,0.1927026397618434,-0.0634341675952948,0.2763416584473101
+obs_thin_lora3k4,HC,phagocytosis_antigen_log2fc_high_vs_other,-0.30093609164532564,-0.30675130868557743,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.2723819366930505,0.13619096834652525,0.39552305176202174,-0.5834630692482314,-0.006778679961916365,-0.7343565356727353,0.132484352382084
+obs_thin_lora3k4,HC,phagocytosis_antigen_c1q_high_minus_other,0.11562659464443442,0.11673490125459679,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.018057569456198387,0.009028784728099194,0.029698195980873365,0.09760242419590437,0.13143415187263974,0.08689297204529317,0.14436021724357567
+obs_thin_lora3k4,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,0.6717776610906977,0.6486903052999875,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.12602940073367297,0.06301470036683648,0.11433083680342548,0.5463907207499076,0.8433393130129084,0.471236760729699,0.8723185614516964
+obs_thin_lora3k4,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.4287647580451886,0.4743760925246945,0.75,0.5,0.25,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.3238300806631181,0.16191504033155904,0.24365236950874636,-0.006828208374359588,0.773135055505725,-0.08652116382784397,0.9440506799182211
+obs_thin_lora3k4,HC,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.5059301792510312,0.5000581932007465,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.04356217612047714,0.02178108806023857,0.06476107423207583,0.4673866053830449,0.556217725219587,0.4366130360286659,0.5752473224733965

paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/obs_thin_lora3k4/rule_A/sample.csv

@@ -0,0 +1,9 @@
+cohort,sample_id,group,source,n_monocytes,n_c1q_high,c1q_high_fraction,ifng_response_mean_c1q_high,ifng_response_mean_other,ifng_response_c1q_high_minus_other,proinflammatory_mean_c1q_high,proinflammatory_mean_other,proinflammatory_c1q_high_minus_other,phagocytosis_antigen_mean_c1q_high,phagocytosis_antigen_mean_other,phagocytosis_antigen_c1q_high_minus_other,ifng_response_log2fc_bgcorr_high_vs_other,proinflammatory_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,ifng_response_log2fc_high_vs_other,proinflammatory_log2fc_high_vs_other,phagocytosis_antigen_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_mean_c1q_high,phagocytosis_antigen_mhcii_fcgr_mean_other,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,background_log2fc_all_genes
+obs_thin_lora3k4,PBMC_BD_1,BD,real,489,47,0.09611451942740286,0.40924168744665346,0.31911157107063787,0.09013011637601559,0.2551164342129083,0.24834321979251167,0.006773214420396634,0.6519377298998936,0.5531691687852623,0.09876856111463128,0.2299596551914457,-0.20052128139622447,0.12364020855183724,0.7072271750024848,-0.11394059091797573,-0.4975400179739412,-0.19308064372975703,0.48983615407349534,2.0363021316161904,1.5188956542935415,0.517406477322649,-0.3121783752289923
+obs_thin_lora3k4,PBMC_BD_2,BD,real,946,82,0.08668076109936575,0.4130383323735123,0.32909205423474225,0.08394627813877004,0.2273325867510144,0.21656949909512532,0.01076308765588907,0.6456899373209753,0.5579973787719771,0.08769255854899827,0.1112485037819655,-0.10920463591370487,0.13537683571535472,0.8016647140879266,-0.14703550011639918,-0.34826815834875746,-0.0830732655677427,0.6749129878437575,1.9460782037485922,1.4063874315585463,0.5396907721900459,-0.25644421834078296
+obs_thin_lora3k4,PBMC_BD_3,BD,real,735,59,0.08027210884353742,0.4117631908069261,0.34849749421947873,0.06326569658744735,0.2533593748006409,0.2546429542204817,-0.001283579419840808,0.6230985763969331,0.5396302239371897,0.08346835245974338,0.1320029661046367,-0.11402444426880066,0.21543586305352141,0.7029578792395398,-0.08863915965316378,-0.3055394807689764,0.004296458274868499,0.5782129639567167,1.839343989171663,1.3085483574657895,0.5307956317058735,-0.24990639315893975
+obs_thin_lora3k4,PBMC_BD_4,BD,real,1402,60,0.042796005706134094,0.40270631783016964,0.2967703881428737,0.10593592968729593,0.23638218856915535,0.21607340566261013,0.020308782906545225,0.6062492820900215,0.4921505041627863,0.11409877792723522,0.15540200651071157,-0.008481624450243008,0.23335347483101732,1.3632841295071858,-0.17243269414979562,-0.3106136668178093,-0.06209838744469078,1.1901992983451954,1.9746609195156302,1.279110962555111,0.6955499569605192,-0.35136537372455845
+obs_thin_lora3k4,PBMC_HC_1,HC,real,272,29,0.10661764705882353,0.4652967693013318,0.3248717750073856,0.14042499429394617,0.2978963855422593,0.23713679288942452,0.06075959265283476,0.714995300992117,0.5835611491194773,0.13143415187263974,0.05774252032308244,-0.2862202926598195,0.08784720652313795,0.6219611794748706,-0.2102689449815565,-0.508004358577479,-0.13918333905861546,0.506817128217178,1.8098731491310698,1.342486543748025,0.4673866053830449,-0.23614286161856138
+obs_thin_lora3k4,PBMC_HC_2,HC,real,743,28,0.03768506056527591,0.3877952619106062,0.3335345925896917,0.0542606693209145,0.25683723244276985,0.2596703687406496,-0.0028331362978797348,0.6241614089369254,0.526558984741021,0.09760242419590437,0.07841726913604807,-0.28233081182238656,-0.03719426928265279,0.6754194311251043,-0.3892544061063789,-0.7416122505648908,-0.4743192783125394,0.441935056832211,1.8853765133470497,1.41368718299493,0.4716893303521197,-0.48153192146184093
+obs_thin_lora3k4,PBMC_HC_3,HC,real,1306,103,0.07886676875957122,0.42216907688980265,0.32688258026523925,0.0952864966245634,0.23347356616265816,0.21603685990087348,0.017436706261784674,0.6509406236946024,0.5483658984811319,0.10257472521347044,0.08573617887831543,-0.11124540699973205,0.18245940470170205,0.8433393130129084,-0.13398476262577583,-0.324170066048235,-0.006778679961916365,0.773135055505725,1.9910187626182394,1.4348010373986524,0.556217725219587,-0.22483172249104755
+obs_thin_lora3k4,PBMC_HC_4,HC,real,473,21,0.04439746300211417,0.39128948934935837,0.2684421339160491,0.12284735543330927,0.24103166463823514,0.2004721081047104,0.04055955653352475,0.6349947570676621,0.5040996797719389,0.13089507729572314,0.5081593227319696,0.12365827374729775,0.1927026397618434,0.5463907207499076,-0.3564115098557639,-0.645578015550816,-0.5834630692482314,-0.006828208374359588,1.775887863109995,1.2474608070606217,0.5284270560493733,-0.778001139836871

paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/obs_thin_lora3k4/rule_B/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+obs_thin_lora3k4,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.1400575632567922,0.13246800053181768,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.12436317715559703,0.06218158857779851,0.19563721992293392,0.02487115967686464,0.2704230922866688,-0.0578320035692943,0.3379471300828787
+obs_thin_lora3k4,BD,ifng_response_log2fc_high_vs_other,-0.45786947689628704,-0.4644061276414329,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.10626726166294014,0.05313363083147007,0.09898803818412272,-0.5790228304533406,-0.3236428218489417,-0.6269644040222074,-0.28877454977036665
+obs_thin_lora3k4,BD,ifng_response_c1q_high_minus_other,0.10637419441193285,0.10085221782656703,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.021906157941805175,0.010953078970902587,0.023422031116124037,0.0873256211163207,0.13646672087827666,0.07151660870950324,0.14123178011436247
+obs_thin_lora3k4,BD,proinflammatory_log2fc_bgcorr_high_vs_other,-0.0723840070809468,-0.05808375573840696,0.25,-0.5,0.375,4,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.12084592084123573,0.060422960420617865,0.08395386899824286,-0.23312679150934018,0.05975827466236692,-0.26467683422584587,0.11990882006395223
+obs_thin_lora3k4,BD,proinflammatory_log2fc_high_vs_other,-0.606087070940153,-0.6229458600387767,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.1203161951357178,0.0601580975678589,0.13553021241141538,-0.72777197756042,-0.45068458612263884,-0.7975369862778824,-0.41463715560242365
+obs_thin_lora3k4,BD,proinflammatory_c1q_high_minus_other,0.02106037036165056,0.01939061390567029,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.01106018949380616,0.00553009474690308,0.0166782654077307,0.011649492814962747,0.03381076082029891,0.0034611407665000107,0.038659599956801106
+obs_thin_lora3k4,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.21428856679000252,0.23067643570641488,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.03528886799762157,0.017644433998810785,0.01965489195887765,0.161432428408661,0.23436896733851945,0.15813610300166492,0.2704410305783401
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paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/obs_thin_lora3k4/rule_B/sample.csv

@@ -0,0 +1,9 @@
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