Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/obs/rule_C/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+obs,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.18268462465457486,0.19967361087522345,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.10717621012080047,0.05358810506040024,0.07968479816657634,0.037056892190223636,0.29433438467762885,0.01214335769794897,0.35322589161120077
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+obs,BD,ifng_response_c1q_high_minus_other,0.09875285296835412,0.0953640156650124,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.02512824792562883,0.012564123962814415,0.017533432325932297,0.07178196493608374,0.13250141560730794,0.05876820308376889,0.13873750285293934
+obs,BD,proinflammatory_log2fc_bgcorr_high_vs_other,-0.1166332110719507,-0.13431174359597725,0.0,-1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.03834949975177604,0.01917474987588802,0.02493121828769994,-0.13856901806502228,-0.059340339030825986,-0.17765582296920976,-0.05561059917469163
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+obs,BD,proinflammatory_c1q_high_minus_other,0.01755295828332245,0.015156509460647963,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.013550786304392406,0.006775393152196203,0.009202965957358651,0.00371906921265569,0.03617974499933818,-0.004009366620728892,0.03911528318737379
+obs,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.1877075352141816,0.16026244463306819,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.07622332265848733,0.038111661329243665,0.06130272562810635,0.13123466624186778,0.29907058534872216,0.06641921942870613,0.3089958509996571
+obs,BD,phagocytosis_antigen_log2fc_high_vs_other,-0.15346025274573388,-0.16993446704913645,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.08134484474314398,0.04067242237157199,0.06951110108407707,-0.23277209720759845,-0.04119997967706421,-0.28289805304908155,-0.024022452442386183
+obs,BD,phagocytosis_antigen_c1q_high_minus_other,0.10795469130630714,0.10395349465619569,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.016680336842153528,0.008340168421076764,0.016261665906155853,0.09284167797130283,0.13107009794153435,0.08141255312920753,0.13449682948340674
+obs,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,0.9578773840053443,0.9539231106350732,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.2453812020975859,0.12269060104879295,0.2118300237396884,0.6643106784689534,1.2593526362822771,0.5674211340045757,1.3483336340061127
+obs,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.736594602389882,0.747305299168173,1.0,1.0,0.125,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.25693742278721643,0.12846871139360821,0.20872777939070386,0.4135242041451379,1.0382436070780439,0.32774982647073453,1.1454393783090293
+obs,BD,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.6346574716620166,0.6358661921953916,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.11666219748029666,0.05833109874014833,0.07252739146174236,0.49057940596068184,0.7763180962966014,0.4490218819932924,0.8202930613307408
+obs,HC,ifng_response_log2fc_bgcorr_high_vs_other,0.20708614197411723,0.16959021181138134,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.1563310853815032,0.0781655426907516,0.13450180755386282,0.06292436669734039,0.42623977757636583,-0.04167150056256114,0.4558437845107956
+obs,HC,ifng_response_log2fc_high_vs_other,-0.4163141719505828,-0.40842697890774793,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.2936891465849202,0.1468445732924601,0.38092805160837473,-0.7535505113214762,-0.09485221866535914,-0.8836391416761351,0.051010797774969474
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+obs,HC,proinflammatory_log2fc_bgcorr_high_vs_other,-0.17727823944845528,-0.2361413389307369,0.25,-0.5,0.25,4,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.23927930307520287,0.11963965153760144,0.20378620697751829,-0.39604061263695184,0.15921033270460463,-0.5580250064497252,0.2034685275528147
+obs,HC,proinflammatory_log2fc_high_vs_other,-0.7304986490949136,-0.7899039472916956,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.17674222545007234,0.08837111272503617,0.15562431779285102,-0.8668391549418836,-0.47534754685437985,-1.011734970280515,-0.44926232790931214
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+obs,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,0.6250217552569585,0.6945402871968596,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.3655735900085957,0.18278679500429784,0.3597282174079038,0.12981360567119143,0.9811928409629235,0.04331259484088035,1.2067309156730366
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+obs,HC,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.5903686545563906,0.5910824993999528,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.02021551193538846,0.01010775596769423,0.021622279446236736,0.565773389766713,0.6135362296589442,0.5582012639222929,0.6225360451904884

paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/obs/rule_C/sample.csv

@@ -0,0 +1,9 @@
+cohort,sample_id,group,source,n_monocytes,n_c1q_high,c1q_high_fraction,ifng_response_mean_c1q_high,ifng_response_mean_other,ifng_response_c1q_high_minus_other,proinflammatory_mean_c1q_high,proinflammatory_mean_other,proinflammatory_c1q_high_minus_other,phagocytosis_antigen_mean_c1q_high,phagocytosis_antigen_mean_other,phagocytosis_antigen_c1q_high_minus_other,ifng_response_log2fc_bgcorr_high_vs_other,proinflammatory_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,ifng_response_log2fc_high_vs_other,proinflammatory_log2fc_high_vs_other,phagocytosis_antigen_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_mean_c1q_high,phagocytosis_antigen_mhcii_fcgr_mean_other,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,background_log2fc_all_genes
+obs,PBMC_BD_1,BD,real,489,37,0.07566462167689161,0.425956473417567,0.3321615041913054,0.09379496922626157,0.2710481149468992,0.25661680349337657,0.01443131145352261,0.6665707124697942,0.5670869250893305,0.0994837873804637,0.2099172275717068,-0.13856901806502228,0.17315827520066335,0.6643106784689534,-0.1871183065811899,-0.47779586088900505,-0.1843465148500988,0.4135242041451379,2.043313121757202,1.5527337157965202,0.49057940596068184,-0.3703534086148575
+obs,PBMC_BD_2,BD,real,946,60,0.06342494714587738,0.43840057280814887,0.34146751070438564,0.09693306210376323,0.2416141520729389,0.2257324446051656,0.015881707467773315,0.680630377604911,0.5722071756729833,0.10842320193192767,0.1894299941787401,-0.13089571124321,0.13123466624186778,0.9118767544441683,-0.14454258270350878,-0.44001081681743426,-0.15552241924817412,0.7122733467298548,2.069733491327239,1.433138819880006,0.6365946714472333,-0.32749503857978535
+obs,PBMC_BD_3,BD,real,735,37,0.050340136054421766,0.43122456140541254,0.3594425964693288,0.07178196493608374,0.2661688478599518,0.26244977864729613,0.00371906921265569,0.6458445357212792,0.5530028577499764,0.09284167797130283,0.037056892190223636,-0.1377277759487445,0.29907058534872216,0.9959694668259781,-0.30463463042603034,-0.4462822489524996,-0.04119997967706421,0.7823372516064913,1.9716630117200968,1.3365252987765468,0.63513771294355,-0.3680843218118448
+obs,PBMC_BD_4,BD,real,1402,39,0.02781740370898716,0.4412138455517879,0.30871242994447995,0.13250141560730794,0.26111490474294813,0.22493515974360995,0.03617974499933818,0.6390091792133311,0.5079390812717968,0.13107009794153435,0.29433438467762885,-0.059340339030825986,0.14736661406547302,1.2593526362822771,-0.12271790893657954,-0.4357924271723348,-0.23277209720759845,1.0382436070780439,2.085658698271529,1.3093406019749276,0.7763180962966014,-0.4424764885948838
+obs,PBMC_HC_1,HC,real,272,20,0.07352941176470588,0.4993185670724193,0.3378432625223306,0.16147530455008868,0.30665117731276736,0.24653839568996855,0.06011278162279882,0.739776378705472,0.600805048900149,0.138971329805323,0.14047490858864367,-0.39604061263695184,0.03454532339053501,0.7924625595868401,-0.2642579932781843,-0.7514030034443787,-0.3497989448329081,0.5471729509237425,1.9313672152803316,1.3655938255136186,0.565773389766713,-0.3771546454138753
+obs,PBMC_HC_2,HC,real,743,17,0.02288021534320323,0.40881218040161754,0.343912057214426,0.06490012318719152,0.2639426781790553,0.268279513003685,-0.0043368348246297095,0.6587784507620924,0.5384429122214537,0.12033553854063872,0.06292436669734039,-0.2794569860254897,-0.08383513974124465,0.596618014806879,-0.5525959645373116,-0.8668391549418836,-0.6524435612938139,0.3102333799948363,2.0226944564121214,1.4380663366609545,0.5846281197511669,-0.6381630278174989
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+obs,PBMC_HC_4,HC,real,473,12,0.02536997885835095,0.44067636430972273,0.27970240564424853,0.1609739586654742,0.27300271341952403,0.2098266744987154,0.06317603892080864,0.6889437813687892,0.5194386070397526,0.16950517432903656,0.42623977757636583,0.15921033270460463,0.15675260980149355,0.12981360567119143,-0.7535505113214762,-0.8284048911390123,-0.8458304807869333,-0.5487021635155486,1.8882686450829127,1.2747324154239685,0.6135362296589442,-0.9903990034833745

paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/obs/rule_D/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+obs,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.16993906368608175,0.18216525681357204,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.09343203422122845,0.046716017110614225,0.06410436787490031,0.04470991802168404,0.2707158230954988,0.021267847634837023,0.3186102797373265
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paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups_k4000/per_arm/obs/rule_D/sample.csv

@@ -0,0 +1,9 @@
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