Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/ji2025_chili/fold4/real_lora/RUN.json +102 -0
- paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/ye2026_sepsis/fewshot_n5/draw0/lora/RUN.json +150 -0
- paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/ye2026_sepsis/fewshot_n5/draw1/lora/RUN.json +150 -0
- paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/ye2026_sepsis/fewshot_n5/draw2/lora/RUN.json +150 -0
paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/ji2025_chili/fold4/real_lora/RUN.json
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{
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"schema": "pbisc_sdd.ft_intradataset.run.v1",
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"source_checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/runs/f01_6k_1x_seed20260627/checkpoint_epoch_016.pt",
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| 4 |
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"source_checkpoint_sha256": "8c7cd0e83e2bc19fe03dfcbc084919a1e2f61be8cc8bc12f4caf543dfda91633",
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| 5 |
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"dataset_dir": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili",
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"condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/conditions_raw_fixed.npz",
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"condition_npz_sha256": "73a8fe0617391a14b876b80178cdd8ae704cfb3542be2496903eb6f3f9e48b57",
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"fold": 4,
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"mode": "lora",
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"trainable": {
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"mode": "lora",
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"lora_layers": [
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"time_encoder.0",
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"time_encoder.2",
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"condition_encoder.0",
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"condition_encoder.3",
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"context_mixer.2",
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"down_blocks.0.input_projection",
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"down_blocks.0.context_projection.1",
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"down_blocks.1.input_projection",
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"down_blocks.1.context_projection.1",
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"down_blocks.2.input_projection",
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"down_blocks.2.context_projection.1",
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"down_blocks.3.input_projection",
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"down_blocks.3.context_projection.1",
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"up_blocks.0.input_projection",
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"up_blocks.0.context_projection.1",
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"up_blocks.1.input_projection",
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"up_blocks.1.context_projection.1",
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"up_blocks.2.input_projection",
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"up_blocks.2.context_projection.1",
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"output_trunk.0",
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"value_head",
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"active_head"
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"lr": 0.0005,
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"batch_size": 256,
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| 51 |
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| 54 |
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| 55 |
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"train_rows": [
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"N064_TOL",
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"N032_AC",
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"N038_BC",
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"N038_AC",
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"N055_AC",
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"N128_BC",
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"N128_AC",
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"N158_AC",
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"N001_TOL",
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"N001_FU1",
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"N002_TOL",
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"N002_FU1",
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"N005_BC",
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"N005_AC",
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"N012_TOL",
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"N012_FU1",
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"N018_BC",
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"N018_AC",
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"N022_TOL",
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"N022_FU1",
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"N035_TOL",
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"N043_TOL",
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"N043_FU1"
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],
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"inner_val_rows": [
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"N136_TOL",
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"N136_FU1",
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"N150_BC"
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],
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"test_rows_never_loaded_for_training": [
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"N138_TOL",
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"N138_FU1",
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"N129_BC",
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"N129_AC",
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"N147_TOL",
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"N159_BC"
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"seed": 20260927,
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| 99 |
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"written_utc": "2026-09-28T07:22:00.856812+00:00",
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| 100 |
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"checkpoint_sha256": "517e829604dc01a81d637d3f23d988bc5c8a25a8fb96647cd2fc88bbc81abf97",
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}
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paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/ye2026_sepsis/fewshot_n5/draw0/lora/RUN.json
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{
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| 2 |
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"schema": "pbisc_sdd.ft_intradataset.run.v1",
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| 3 |
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"source_checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/runs/f01_6k_1x_seed20260627/checkpoint_epoch_016.pt",
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| 4 |
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"source_checkpoint_sha256": "8c7cd0e83e2bc19fe03dfcbc084919a1e2f61be8cc8bc12f4caf543dfda91633",
|
| 5 |
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"dataset_dir": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ye2026_sepsis",
|
| 6 |
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"condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ye2026_sepsis/conditions_raw_fixed.npz",
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| 7 |
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"condition_npz_sha256": "ce8b61d7dcd3e62b9e63d52189cfb5bba881f87a661384277a7949a629231cb4",
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| 8 |
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"fold": 0,
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| 9 |
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"mode": "lora",
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"trainable": {
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"mode": "lora",
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"lora_layers": [
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| 13 |
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"time_encoder.0",
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"time_encoder.2",
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"condition_encoder.0",
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"condition_encoder.3",
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| 17 |
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"context_mixer.2",
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| 18 |
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"down_blocks.0.input_projection",
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| 19 |
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"down_blocks.0.context_projection.1",
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| 20 |
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"down_blocks.1.input_projection",
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"down_blocks.1.context_projection.1",
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"down_blocks.2.input_projection",
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"down_blocks.2.context_projection.1",
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"down_blocks.3.input_projection",
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"down_blocks.3.context_projection.1",
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"up_blocks.0.input_projection",
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"up_blocks.0.context_projection.1",
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| 28 |
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"up_blocks.1.input_projection",
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| 29 |
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"up_blocks.1.context_projection.1",
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| 30 |
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"up_blocks.2.input_projection",
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| 31 |
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"up_blocks.2.context_projection.1",
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| 32 |
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"output_trunk.0",
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| 33 |
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"value_head",
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| 34 |
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"active_head"
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| 35 |
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| 36 |
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"lora_rank": 16,
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| 37 |
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"PIC02",
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"PIC05",
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"Res-PS16",
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"Res-PS21",
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"Res-PS22",
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"Res-PS25",
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| 122 |
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"Res-S166",
|
| 123 |
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|
| 124 |
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"Res-S177",
|
| 125 |
+
"Res-S184",
|
| 126 |
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"Res-S19",
|
| 127 |
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"Res-S26",
|
| 128 |
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"Res-S40",
|
| 129 |
+
"Res-S87",
|
| 130 |
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"Skin-S140",
|
| 131 |
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"Skin-S142",
|
| 132 |
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"Skin-S152",
|
| 133 |
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"Skin-S38",
|
| 134 |
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"Skin-S43",
|
| 135 |
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"Skin-S46",
|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/ye2026_sepsis/fewshot_n5/draw1/lora/RUN.json
ADDED
|
@@ -0,0 +1,150 @@
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|
| 1 |
+
{
|
| 2 |
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"schema": "pbisc_sdd.ft_intradataset.run.v1",
|
| 3 |
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|
| 4 |
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|
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|
| 6 |
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|
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| 8 |
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| 9 |
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|
| 11 |
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| 12 |
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|
| 13 |
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| 17 |
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| 18 |
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| 19 |
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| 20 |
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| 21 |
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| 22 |
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| 23 |
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| 24 |
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| 25 |
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| 26 |
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|
| 27 |
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| 28 |
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| 29 |
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|
| 30 |
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|
| 31 |
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|
| 32 |
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|
| 33 |
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|
| 34 |
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|
| 35 |
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| 36 |
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|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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| 47 |
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| 48 |
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|
| 49 |
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|
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|
| 51 |
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"train_donors_file": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ye2026_sepsis/fewshot_n5/draw1/train_donors.txt",
|
| 52 |
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"fixed_steps": 3000,
|
| 53 |
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|
| 54 |
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|
paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/ye2026_sepsis/fewshot_n5/draw2/lora/RUN.json
ADDED
|
@@ -0,0 +1,150 @@
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|
| 1 |
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{
|
| 2 |
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|
| 3 |
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|
| 6 |
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