Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/17017e057327e87b/summary.json

@@ -0,0 +1,214 @@
+{
+  "schema": "paired_ft_scores.v1",
+  "dataset": "immicro",
+  "written_utc": "2026-10-15T09:50:42.171479+00:00",
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+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py",
+    "--dataset",
+    "immicro",
+    "--out",
+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/all_width_results_20261015/immicro/healthy/fold2/n20/score",
+    "--arm",
+    "lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold2/n20/lora.npz",
+    "--condition",
+    "lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold2/n20/test_raw.npz",
+    "--donors",
+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/all_width_results_20261015/immicro/healthy/fold2/n20/test_samples.txt",
+    "--threads",
+    "2",
+    "--no-contrast",
+    "--no-deg"
+  ],
+  "arms": [
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+  "donors": [
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+    "HS59",
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+    "HS71",
+    "HS73",
+    "HS80",
+    "HS91",
+    "HS102",
+    "HS105",
+    "HS108",
+    "HS111"
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+        "checkpoint_sha256": "2d1b577a9dbd09885a3adb5ab566754ce4e0468dd44505ba564eecb723fad11b",
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+  "code_sha256": {
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+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/umap/cell_immicro_5arm/tools/stage_b_embed.py": "d056cfdf38fb0e5f478756f370174e993b75d0c973c48e02e21749175a4ca2da",
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+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/predict_scanvi.py": "482ee5dcf4d72b54bc36cbb6dcff62e5030bc7afc46cb5fb01eca73a82ee45a5",
+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/poisson_readout.py": "8bfa080942fbcdc89ae23b276524a1a83266fb8cbc56b9af279e50f82e6cde38"
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+  "core_reused_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/all_width_results_20261015/immicro/healthy/fold2/n20/score"
+}

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/3d360c39edcaee31/summary.json

@@ -0,0 +1,700 @@
+{
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+ "dataset": "immicro",
+ "written_utc": "2026-10-12T14:37:38.332155+00:00",
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+  "--dataset",
+  "immicro",
+  "--out",
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+  "--donors",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/immicro/healthy/fold1/n5/test_sample_ids.txt",
+  "--threads",
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+  "--arm",
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+  "--arm",
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+  "--arm",
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+  "--arm",
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+  "--no-contrast",
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/56a59d101a2931bc/donor_bootstrap_2000.csv

@@ -0,0 +1,113 @@
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/9899af8df6145f56/en.csv

@@ -0,0 +1,25 @@
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+imperial_eskd,scored,strict,lora,all,sq,142,480410,213000,100,169.51556791917358,253.535233806371,278.099158146541,1.2923592242457724,False,"[20000, 20000]",,,82.3
+imperial_eskd,scored,strict,lora,all,l2,142,480410,213000,100,12.80098299375653,15.664209264782434,16.469178906369013,1.2811407710708649,False,"[20000, 20000]",,,82.3
+imperial_eskd,scored,strict,pairedcal,pc,sq,142,21232,21232,100,202.23037930470602,314.5826533861815,338.29761927984805,1.2110768659339193,True,"[21232, 21232]",,,14.9
+imperial_eskd,scored,strict,pairedcal,pc,l2,142,21232,21232,100,14.001004668166708,17.3510517571739,18.080737006860808,1.2178134307667765,True,"[21232, 21232]",,,14.9
+imperial_eskd,scored,strict,pairedcal,all,sq,142,480410,213000,100,160.4468838983892,253.21437357196618,274.4680771101256,1.2291072401866785,False,"[20000, 20000]",,,77.2
+imperial_eskd,scored,strict,pairedcal,all,l2,142,480410,213000,100,12.470952743111123,15.660221835188981,16.349912233060245,1.2162534354923058,False,"[20000, 20000]",,,77.2
+imperial_eskd,scored,strict,scsemi,pc,sq,142,21232,21232,100,138.10966819798477,313.11657434719945,443.2490360812131,1.7435847224398098,True,"[21232, 21232]",,,15.1
+imperial_eskd,scored,strict,scsemi,pc,l2,142,21232,21232,100,11.32712646622382,17.271405032485475,20.753223531999385,1.5857428215554876,True,"[21232, 21232]",,,15.1
+imperial_eskd,scored,strict,scsemi,all,sq,142,480410,213000,100,120.22325761615271,251.0792108385235,395.84992388454367,2.106336467550722,False,"[20000, 20000]",,,78.2
+imperial_eskd,scored,strict,scsemi,all,l2,142,480410,213000,100,10.547456582230483,15.568717270864509,19.61666635574302,1.8061619055233136,False,"[20000, 20000]",,,78.2
+imperial_eskd,scored,strict,raw,pc,sq,142,21232,21232,100,235.5240093871863,289.26859349882454,637.1761070875402,7.4733501866168,True,"[21232, 21232]",,,15.3
+imperial_eskd,scored,strict,raw,pc,l2,142,21232,21232,100,14.929477232576014,16.604719118448333,24.538904377211768,5.7361430762173224,True,"[21232, 21232]",,,15.3
+imperial_eskd,scored,strict,raw,all,sq,142,480410,213000,100,172.61264781787483,244.2076291595517,486.2265168306749,4.380389004029801,False,"[20000, 20000]",,,77.0
+imperial_eskd,scored,strict,raw,all,l2,142,480410,213000,100,12.842687644399724,15.377713854657127,21.56868916468429,3.442174082846481,False,"[20000, 20000]",,,77.0
+imperial_eskd,scored,strict,refcal,pc,sq,142,21232,21232,100,191.9625577832589,313.8934257353471,369.3184632583628,1.4545611661256652,True,"[21232, 21232]",,,14.9
+imperial_eskd,scored,strict,refcal,pc,l2,142,21232,21232,100,13.636528063773802,17.329842366365124,18.888996717727576,1.422155880496959,True,"[21232, 21232]",,,14.9
+imperial_eskd,scored,strict,refcal,all,sq,142,480410,213000,100,154.64290245554412,252.43938076857356,302.2523794975936,1.5093537066802891,False,"[20000, 20000]",,,77.5
+imperial_eskd,scored,strict,refcal,all,l2,142,480410,213000,100,12.24397384001664,15.637779713854625,17.165710071162863,1.450211477647168,False,"[20000, 20000]",,,77.5