Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/work/corpus_c1q/SAMPLE.json +121 -0
- paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/work/corpus_c1q/scanvi_labels/labels.parquet +3 -0
- paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/work/scanvi_labels_lora3k4_raw_s13_f01common/labels.manifest.json +168 -0
- paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/work/scanvi_labels_zsk4_raw_s13_f01common/labels.manifest.json +168 -0
paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/work/corpus_c1q/SAMPLE.json
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"shard_offsets": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/full_recipe_allcells_6k_broad_20260909/coverage_v1/shard_offsets.csv"
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}
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paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/work/corpus_c1q/scanvi_labels/labels.parquet
ADDED
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@@ -0,0 +1,3 @@
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| 1 |
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version https://git-lfs.github.com/spec/v1
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oid sha256:63ff40b7a69092c2e8061f6c11347c4d55bfe07047894c3da94c15671c4b93df
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size 3946818
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paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/work/scanvi_labels_lora3k4_raw_s13_f01common/labels.manifest.json
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@@ -0,0 +1,168 @@
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| 1 |
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{
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| 2 |
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"dataset_id": "GSE198533",
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| 3 |
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"split": "",
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| 4 |
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"input_h5ad": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/behcet_c1q_lora3_20261004/work/lora3k4_raw_s13_poisson.h5ad",
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| 5 |
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"method": "generated_GSE198533_all19_lora3study_lora3k4_raw_s13",
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"out_parquet": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/behcet_c1q_lora3_20261004/work/scanvi_labels_lora3k4_raw_s13_f01common/labels.parquet",
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"training_source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/reference/aifi_reference_f01common.h5ad",
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"target_truth_used_for_fitting": false,
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| 9 |
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"classifier": "aifi_scanvi_rebuild_20260916_frozen_predict[aifi_scanvi_f01common_v1]",
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| 10 |
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"labels": [
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| 11 |
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"T cell",
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| 12 |
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"B cell",
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| 13 |
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"Monocyte",
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| 14 |
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"NK cell",
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| 15 |
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"DC",
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| 16 |
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"Other"
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| 17 |
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],
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| 18 |
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"l2_labels": [
|
| 19 |
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"ASDC",
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| 20 |
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"CD14 monocyte",
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| 21 |
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"CD16 monocyte",
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| 22 |
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"CD56bright NK cell",
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| 23 |
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"CD56dim NK cell",
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| 24 |
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"CD8aa",
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| 25 |
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"DN T cell",
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"Effector B cell",
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"Erythrocyte",
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| 28 |
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"ILC",
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| 29 |
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"Intermediate monocyte",
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| 30 |
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"MAIT",
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| 31 |
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"Memory B cell",
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| 32 |
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"Memory CD4 T cell",
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| 33 |
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"Memory CD8 T cell",
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| 34 |
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"Naive B cell",
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| 35 |
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"Naive CD4 T cell",
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| 36 |
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"Naive CD8 T cell",
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| 37 |
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"Plasma cell",
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| 38 |
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"Platelet",
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| 39 |
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"Progenitor cell",
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| 40 |
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"Proliferating NK cell",
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| 41 |
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"Proliferating T cell",
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| 42 |
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"Transitional B cell",
|
| 43 |
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"Treg",
|
| 44 |
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"cDC1",
|
| 45 |
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"cDC2",
|
| 46 |
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"gdT",
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| 47 |
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"pDC"
|
| 48 |
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],
|
| 49 |
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"n_cells": 95000,
|
| 50 |
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"n_genes": 1005,
|
| 51 |
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"note": "Evaluation-only annotation with a frozen AIFI scANVI (zero query-training epochs); L1 outside PBMC5 -> Other, never dropped.",
|
| 52 |
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"label_source_column": "AIFI_L2 (reference) -> AIFI_L2_TO_L1 -> PBMC5 + Other",
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| 53 |
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"query_train_epochs": 0,
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| 54 |
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"confidence_threshold": 0.0,
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| 55 |
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"subset": false,
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| 56 |
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"evaluator_aligned": true,
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| 57 |
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"gene_space": {
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| 58 |
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"join_key": "ensembl_id",
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| 59 |
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"model_genes": 1005,
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| 60 |
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"query_genes": 6000,
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| 61 |
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"model_genes_missing_from_query_zero_padded": 0,
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| 62 |
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"query_genes_outside_model_dropped": 4995,
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|
paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/work/scanvi_labels_zsk4_raw_s13_f01common/labels.manifest.json
ADDED
|
@@ -0,0 +1,168 @@
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