Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/immicro/fewshot_n5/draw4/lora/RUN.json +175 -0
- paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/immicro/fold0/lora_r4/RUN.json +176 -0
- paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/immicro/fold0/lora_r64/RUN.json +176 -0
- paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/immicro/fold0/real_full/RUN.json +147 -0
paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/immicro/fewshot_n5/draw4/lora/RUN.json
ADDED
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| 1 |
+
{
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| 2 |
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"schema": "pbisc_sdd.ft_intradataset.run.v1",
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| 3 |
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"source_checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/runs/f01_6k_1x_seed20260627/checkpoint_epoch_016.pt",
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| 4 |
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"source_checkpoint_sha256": "8c7cd0e83e2bc19fe03dfcbc084919a1e2f61be8cc8bc12f4caf543dfda91633",
|
| 5 |
+
"dataset_dir": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/immicro",
|
| 6 |
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"condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/immicro/conditions_raw_fixed.npz",
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| 7 |
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"condition_npz_sha256": "2be5717d19e86bdf38e4838d4bd2886a211ba78bfbfe749c458305a3e0ac2dcc",
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"fold": 0,
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"mode": "lora",
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"trainable": {
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"mode": "lora",
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"lora_layers": [
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"time_encoder.0",
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"time_encoder.2",
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"condition_encoder.0",
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"condition_encoder.3",
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| 17 |
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"context_mixer.2",
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| 18 |
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"down_blocks.0.input_projection",
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| 19 |
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"down_blocks.0.context_projection.1",
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| 20 |
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"down_blocks.1.input_projection",
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| 21 |
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"down_blocks.1.context_projection.1",
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"down_blocks.2.input_projection",
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"down_blocks.2.context_projection.1",
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"down_blocks.3.input_projection",
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"down_blocks.3.context_projection.1",
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"up_blocks.0.input_projection",
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"up_blocks.0.context_projection.1",
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"up_blocks.1.input_projection",
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"up_blocks.1.context_projection.1",
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"up_blocks.2.input_projection",
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"up_blocks.2.context_projection.1",
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"output_trunk.0",
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| 33 |
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"value_head",
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| 34 |
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"active_head"
|
| 35 |
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],
|
| 36 |
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"lora_rank": 16,
|
| 37 |
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"lora_alpha": 16.0,
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| 38 |
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"n_trainable": 1296224,
|
| 39 |
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"n_total_base": 54185184,
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| 40 |
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"trainable_tensors": 44
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| 41 |
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},
|
| 42 |
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"lr": 0.0005,
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| 43 |
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"warmup": 200,
|
| 44 |
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"batch_size": 256,
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| 45 |
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"ema_decay": 0.999,
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| 46 |
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"max_steps": 3000,
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"steps_run": 3000,
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| 48 |
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"eval_every": 250,
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"patience": 8,
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| 50 |
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"train_subset": null,
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| 51 |
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"train_donors_file": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/immicro/fewshot_n5/draw4/train_donors.txt",
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"fixed_steps": 3000,
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| 53 |
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"selected_step": 3000,
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| 54 |
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"selected_inner_val_loss": NaN,
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| 55 |
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"pretrained_inner_val_loss": NaN,
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"train_rows": [
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"HS19",
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"HS76",
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"HS84"
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],
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"inner_val_rows": [],
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"test_rows_never_loaded_for_training": [
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"HS1",
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"HS2",
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"HS91",
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| 156 |
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"HS109",
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"HS110",
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| 168 |
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| 173 |
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| 174 |
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| 175 |
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}
|
paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/immicro/fold0/lora_r4/RUN.json
ADDED
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@@ -0,0 +1,176 @@
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|
| 1 |
+
{
|
| 2 |
+
"schema": "pbisc_sdd.ft_intradataset.run.v1",
|
| 3 |
+
"source_checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/runs/f01_6k_1x_seed20260627/checkpoint_epoch_016.pt",
|
| 4 |
+
"source_checkpoint_sha256": "8c7cd0e83e2bc19fe03dfcbc084919a1e2f61be8cc8bc12f4caf543dfda91633",
|
| 5 |
+
"dataset_dir": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/immicro",
|
| 6 |
+
"condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/immicro/conditions_raw_fixed.npz",
|
| 7 |
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"condition_npz_sha256": "2be5717d19e86bdf38e4838d4bd2886a211ba78bfbfe749c458305a3e0ac2dcc",
|
| 8 |
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"fold": 0,
|
| 9 |
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"mode": "lora",
|
| 10 |
+
"trainable": {
|
| 11 |
+
"mode": "lora",
|
| 12 |
+
"lora_layers": [
|
| 13 |
+
"time_encoder.0",
|
| 14 |
+
"time_encoder.2",
|
| 15 |
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"condition_encoder.0",
|
| 16 |
+
"condition_encoder.3",
|
| 17 |
+
"context_mixer.2",
|
| 18 |
+
"down_blocks.0.input_projection",
|
| 19 |
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"down_blocks.0.context_projection.1",
|
| 20 |
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"down_blocks.1.input_projection",
|
| 21 |
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"down_blocks.1.context_projection.1",
|
| 22 |
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paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/immicro/fold0/lora_r64/RUN.json
ADDED
|
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| 1 |
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| 174 |
+
"checkpoint_sha256": "4eefc4ed554cf367f6a72e53c71875c88d5456d8eed91a3ed72094c1417904c0",
|
| 175 |
+
"reload_forward_max_abs_diff": 0.0
|
| 176 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261013T144247Z-f01-trunk4x-campaign-launch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/baseline_records/immicro/fold0/real_full/RUN.json
ADDED
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| 1 |
+
{
|
| 2 |
+
"schema": "pbisc_sdd.ft_intradataset.run.v1",
|
| 3 |
+
"source_checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/runs/f01_6k_1x_seed20260627/checkpoint_epoch_016.pt",
|
| 4 |
+
"source_checkpoint_sha256": "8c7cd0e83e2bc19fe03dfcbc084919a1e2f61be8cc8bc12f4caf543dfda91633",
|
| 5 |
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"dataset_dir": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/immicro",
|
| 6 |
+
"condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/immicro/conditions_raw_fixed.npz",
|
| 7 |
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"condition_npz_sha256": "2be5717d19e86bdf38e4838d4bd2886a211ba78bfbfe749c458305a3e0ac2dcc",
|
| 8 |
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"fold": 0,
|
| 9 |
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"mode": "full",
|
| 10 |
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"trainable": {
|
| 11 |
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"mode": "full",
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| 12 |
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"n_trainable": 54185184,
|
| 13 |
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|
| 14 |
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"trainable_tensors": 64
|
| 15 |
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},
|
| 16 |
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"lr": 5e-05,
|
| 17 |
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|
| 18 |
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"batch_size": 256,
|
| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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"eval_every": 250,
|
| 23 |
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|
| 24 |
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| 25 |
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| 26 |
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| 27 |
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}
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