Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/fewshot_draw2/per_donor.csv

@@ -0,0 +1,13 @@
+donor,group,bp_comp_l1_final_cells,bp_comp_l1_first_cells,bp_comp_l1_final_mrna,bp_comp_l1_first_mrna,lora_comp_l1,bp_first_T cell,bp_final_T cell,obs_T cell,bp_first_B cell,bp_final_B cell,obs_B cell,bp_first_Monocyte,bp_final_Monocyte,obs_Monocyte,bp_first_NK cell,bp_final_NK cell,obs_NK cell,bp_first_DC,bp_final_DC,obs_DC,bp_first_Other,bp_final_Other,obs_Other
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+7085CA_d14,mild,1.8027653819075455,1.0653669792000702,1.6073823130645124,0.7348760505465461,0.3310838170550461,0.36408250602942427,6.866607225248428e-06,0.472533019264743,0.015496879086687412,0.024337571744554965,0.07133843694792631,0.012949057723513305,0.004717871565290218,0.16210986792294102,0.04000889715689695,0.03682797683521432,0.24270211155043325,0.0020543449638871134,2.196854386715105e-06,0.018591738874400604,0.5654083150395909,0.9341075163933286,0.032724825439555814
+2AD75E_d0,mild,1.7610673094123874,0.5733476171722127,1.551661907053594,0.3735716678245243,0.197648078339616,0.7070802574271382,0.04759226492914535,0.6034056934875861,0.01967979261323431,0.03029351548501659,0.06408423241908229,0.029591524209958642,0.002885384017369195,0.14064734173924348,0.050076711531118735,0.031674501006970016,0.15949564539191471,0.0035531013151389574,1.3115984483042974e-06,0.025347718705316522,0.1900186129034111,0.8875530229630506,0.007019368256856883
+2AD75E_d7,mild,1.731638630704408,0.6869970075883178,1.5029222749852673,0.524012853185762,0.2086464107692796,0.5702786600711202,0.057949702188233254,0.5808172206876845,0.038322897289424764,0.0494686392531674,0.14372797409277074,0.00839956818432562,8.649063052088606e-07,0.10277169254214687,0.025870166357064125,0.014950159698138553,0.14715687208305553,0.0018195556707031873,6.699687483854478e-07,0.013715591961139155,0.35530915242736205,0.8776299639854072,0.011810648633203162
+2AD75E_d14,mild,1.8444368423538888,0.6790311074789022,1.6477667080873695,0.4416278932357288,0.2226281040023371,0.5663225334509098,0.011096161925890424,0.5811422728600643,0.030931343967799067,0.038455293789784545,0.12503651767455448,0.02940328950784002,0.006419673630673376,0.14198071866783524,0.02100948866783314,0.011511903472203539,0.12496348232544552,0.002519806441802369,5.617801390275712e-07,0.016579024247735902,0.34981353796381565,0.9325164054013091,0.010297984224364592
+82CCF5_d0,severe,1.5401545382880522,0.9569795313541548,1.1458130907716235,0.5683518785862222,0.3621728395061728,0.3331858827077917,0.03834663085094427,0.5422222222222223,0.033768256297010406,0.05008935870955716,0.11832098765432099,0.04362073100274614,0.03610799161369767,0.1539753086419753,0.032318447601622266,0.029624470547392923,0.09303703703703704,0.0028638302939990585,1.1927146289412878e-06,0.016691358024691356,0.5542428520968306,0.8458303555637791,0.07575308641975309
+82CCF5_d7,severe,1.858747248170304,1.2139855730348867,1.7246830990965083,0.8943483672822099,0.2080515653775322,0.3206771563177258,0.0019763101956662543,0.619060773480663,0.02040769912676026,0.02836643070651476,0.09972375690607735,0.012196555104626914,0.004656627011057254,0.14152854511970533,0.00613357208090905,0.0036740728009728436,0.09410681399631676,0.001640112988814524,8.173369168535002e-07,0.013627992633517496,0.6389449043811634,0.9613257419488721,0.03195211786372008
+82CCF5_d14,severe,1.7513936455326227,0.9877776380593217,1.5683757221872319,0.6518150872489297,0.2173878437047757,0.3842340765591556,0.011220081541906787,0.6330499276410999,0.02489933712068642,0.0337232714374526,0.10121201157742403,0.022021574709305113,0.010090790855728084,0.11369392185238784,0.0037360901052236697,7.497533663225993e-05,0.06828871201157742,0.0020269042125818986,8.59798582528834e-07,0.014562228654124458,0.5630820172930472,0.9448900210296978,0.0691931982633864
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/fewshot_draw2/summary.json

@@ -0,0 +1,147 @@
+{
+ "dataset": "giroux2022",
+ "comparison": "fewshot",
+ "draw": 2,
+ "gene_mode": "score",
+ "stored_scores": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_nosex/giroux2022/fewshot_n5/draw2",
+ "lora_arm": "lora5",
+ "n_donors": 12,
+ "contrast": true,
+ "genes_scoring": 5563,
+ "genes_covered_by_Z_all_donors": 5385,
+ "bayesprism": {
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+  "comp_l1_by_variant": {
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+  "partial_r_mean_cp10k": 0.12680783898552012,
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+ "observed_mean_fraction": {
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+ "gates": {
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+  "broadcast_r_equal": true,
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+ "n_case": 6,
+ "n_control": 6,
+ "deg_per_type": {
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+ "tool_sha256": "15ed044bbfc39c501c7187ad78586902f2aa0635e7b3a90786b4587cedc2008a",
+ "score_ft_sha256": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
+ "seconds": 0.6
+}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/fewshot_draw2_cibersortx/contrast.csv

@@ -0,0 +1,17 @@
+genes,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast
+zero_filled,T cell,mean_cp10k,2872,0.14207699218896452,0.3625775242708975,0.03670999356082373,0.30189764776429945
+zero_filled,T cell,pseudobulk_log1p_cpm,2872,0.17063072551567537,0.48116424377694494,0.011389224964314035,0.3350700663650392
+zero_filled,B cell,mean_cp10k,3000,,0.3415650846257105,,
+zero_filled,B cell,pseudobulk_log1p_cpm,3000,,0.444312077425732,,
+zero_filled,Monocyte,mean_cp10k,3030,,0.5778525672489366,,
+zero_filled,Monocyte,pseudobulk_log1p_cpm,3030,,0.5873665894516398,,
+zero_filled,NK cell,mean_cp10k,2903,,0.3037611845888768,,
+zero_filled,NK cell,pseudobulk_log1p_cpm,2903,,0.3887293796905318,,
+covered,T cell,mean_cp10k,1167,0.28706463437770313,0.3744566448404962,0.06455789214026282,0.644368490356193
+covered,T cell,pseudobulk_log1p_cpm,1167,0.36539445954002553,0.4204107659037112,0.11380409268959311,0.6917769350353612
+covered,B cell,mean_cp10k,0,,,,
+covered,B cell,pseudobulk_log1p_cpm,0,,,,
+covered,Monocyte,mean_cp10k,0,,,,
+covered,Monocyte,pseudobulk_log1p_cpm,0,,,,
+covered,NK cell,mean_cp10k,0,,,,
+covered,NK cell,pseudobulk_log1p_cpm,0,,,,

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/fewshot_draw2_cibersortx/per_donor.csv

@@ -0,0 +1,13 @@
+donor,group,bp_comp_l1_final_cells,bp_comp_l1_first_cells,bp_comp_l1_final_mrna,bp_comp_l1_first_mrna,lora_comp_l1,bp_first_T cell,bp_final_T cell,obs_T cell,bp_first_B cell,bp_final_B cell,obs_B cell,bp_first_Monocyte,bp_final_Monocyte,obs_Monocyte,bp_first_NK cell,bp_final_NK cell,obs_NK cell,bp_first_DC,bp_final_DC,obs_DC,bp_first_Other,bp_final_Other,obs_Other
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