Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/fewshot_draw1_full/contrast.csv

@@ -0,0 +1,17 @@
+genes,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast
+zero_filled,T cell,mean_cp10k,2916,0.5273478561919054,0.6571144835533105,-0.07709936255727917,0.8492213818414895
+zero_filled,T cell,pseudobulk_log1p_cpm,2916,0.5674491619879618,0.6872156600560435,-0.1296799554041427,0.8886002521646037
+zero_filled,B cell,mean_cp10k,3099,0.13600794782389583,0.3825835491576257,0.03444113371340963,0.27554479929824993
+zero_filled,B cell,pseudobulk_log1p_cpm,3099,0.07860252742601168,0.3771207985959151,-0.008337232509317824,0.2283622068892362
+zero_filled,Monocyte,mean_cp10k,3045,0.47211182751447117,0.4614533190457718,0.26912894978425245,0.6151744405251474
+zero_filled,Monocyte,pseudobulk_log1p_cpm,3045,0.2918972707509529,0.5171610414843097,0.14834242158792404,0.332924622074135
+zero_filled,NK cell,mean_cp10k,2993,0.15499323367939974,0.5038596937916778,0.04321692077302229,0.23560925481799977
+zero_filled,NK cell,pseudobulk_log1p_cpm,2993,0.12236014071143231,0.5135427805432597,0.023202167747752148,0.200284375217911
+covered,T cell,mean_cp10k,2842,0.5324404316207973,0.6563220613055337,-0.07883139746804602,0.8578231049808777
+covered,T cell,pseudobulk_log1p_cpm,2842,0.5731466345422983,0.6866441651787444,-0.14092646325252436,0.8998050902764156
+covered,B cell,mean_cp10k,3020,0.13702839761609706,0.38340171521715155,0.034201532511185004,0.278267125982371
+covered,B cell,pseudobulk_log1p_cpm,3020,0.07943111978638812,0.38037128810634563,-0.00955608266030937,0.23142908300848836
+covered,Monocyte,mean_cp10k,2976,0.47345255769896966,0.46413887186299696,0.26719390418345423,0.6199801219331202
+covered,Monocyte,pseudobulk_log1p_cpm,2976,0.29505954244137694,0.5181098361289569,0.150665675869145,0.33515333626332133
+covered,NK cell,mean_cp10k,2918,0.15663835113665972,0.5014945324170147,0.044450347658081306,0.23785977875655046
+covered,NK cell,pseudobulk_log1p_cpm,2918,0.12401991157007157,0.51222810436626,0.02531876755068273,0.20052900448564104

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/fewshot_draw1_full/per_donor.csv

@@ -0,0 +1,11 @@
+donor,group,bp_comp_l1_final_cells,bp_comp_l1_first_cells,bp_comp_l1_final_mrna,bp_comp_l1_first_mrna,lora_comp_l1,bp_first_T cell,bp_final_T cell,obs_T cell,bp_first_B cell,bp_final_B cell,obs_B cell,bp_first_Monocyte,bp_final_Monocyte,obs_Monocyte,bp_first_NK cell,bp_final_NK cell,obs_NK cell,bp_first_DC,bp_final_DC,obs_DC,bp_first_Other,bp_final_Other,obs_Other
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+180E1A_d7,severe,1.935232312784139,1.6868110323966135,1.9336563733942453,1.4823453442111372,0.0691422276775878,0.1244855489552129,5.647174478455854e-07,0.7348692285903126,1.8741499106194043e-06,6.185050840856022e-07,0.04909829100179398,1.4184318366653475e-06,0.0002792008645953521,0.09064299877254273,1.2455224355112813e-06,5.09592305428284e-07,0.08280615617033331,1.6680103554098641e-06,2.211965556982108e-07,0.010480596733075253,0.8755082449302488,0.9997188851240116,0.03210272873194221
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/fewshot_draw1_full/summary.json

@@ -0,0 +1,147 @@
+{
+ "dataset": "giroux2022",
+ "comparison": "fewshot",
+ "draw": 1,
+ "gene_mode": "full",
+ "stored_scores": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_nosex/giroux2022/fewshot_n5/draw1",
+ "lora_arm": "lora5",
+ "n_donors": 10,
+ "contrast": true,
+ "genes_scoring": 5563,
+ "genes_covered_by_Z_all_donors": 5209,
+ "bayesprism": {
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+ "observed_mean_fraction": {
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+  "Monocyte": 0.2119,
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+ "lora": {
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+  "logfc_r_mean_cp10k_covered_genes": 0.5013392952006742,
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+ "other_arms": {
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+ "gates": {
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+  "broadcast_r_equal": true,
+  "broadcast_deg_equal": true
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+ "n_case": 6,
+ "n_control": 4,
+ "deg_per_type": {
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+  "covered": {
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+ },
+ "tool_sha256": "15ed044bbfc39c501c7187ad78586902f2aa0635e7b3a90786b4587cedc2008a",
+ "score_ft_sha256": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
+ "seconds": 1.7
+}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/fewshot_draw2/contrast.csv

@@ -0,0 +1,17 @@
+genes,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast
+zero_filled,T cell,mean_cp10k,2872,0.2951549080080418,0.3625775242708975,-0.11387781480958126,0.9251548350076603
+zero_filled,T cell,pseudobulk_log1p_cpm,2872,0.3909443308917275,0.48116424377694494,-0.23064591847889387,0.9472156105319298
+zero_filled,B cell,mean_cp10k,3000,0.44918491178810255,0.3415650846257105,0.3103874190053224,0.7611478982041667
+zero_filled,B cell,pseudobulk_log1p_cpm,3000,0.440594394358909,0.444312077425732,0.1305349576790646,0.8552300850777248
+zero_filled,Monocyte,mean_cp10k,3030,0.6046798611429678,0.5778525672489366,0.2535420403626784,0.8696379024645923
+zero_filled,Monocyte,pseudobulk_log1p_cpm,3030,0.5520654720784444,0.5873665894516398,0.01306393623174854,0.9334420403766075
+zero_filled,NK cell,mean_cp10k,2903,0.2875405620543598,0.3037611845888768,0.057179711383660875,0.8529985010719096
+zero_filled,NK cell,pseudobulk_log1p_cpm,2903,0.35146587457202016,0.3887293796905318,0.017427991654839815,0.8849001495390935
+covered,T cell,mean_cp10k,2868,0.29525534583572505,0.3658417420815674,-0.12655895832041947,0.9274514990124751
+covered,T cell,pseudobulk_log1p_cpm,2868,0.3911956270833982,0.48048082478912313,-0.2316498130386969,0.9483303718606197
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+covered,B cell,pseudobulk_log1p_cpm,2996,0.4406488274435038,0.444012828234951,0.1302746667986801,0.8569103207302351
+covered,Monocyte,mean_cp10k,3026,0.606028690494537,0.5787971476903684,0.254000129838585,0.8716491854945737
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