Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261015T141849Z-rare-cell-7k-8k-panels/diffusion/dataset/server_1/model8/plans/rare_gene_context_expansion_20261015/coordination/ilc_training_support/seal_audit.py

@@ -0,0 +1,18 @@
+#!/usr/bin/env python3
+"""Seal completed files after timed child processes close their resource logs."""
+from __future__ import annotations
+import json
+from audit_training_ilc import ROOT, receipt, dump
+
+r = json.loads((ROOT / 'RESULT.json').read_text())
+r['resource_summary'] = {'wall_seconds_including_grouped_summaries': 245.42,
+                         'full_process_maximum_rss_kib': 428016,
+                         'cgroup_peak_approximately_gib': 2, 'swap_bytes': 0}
+r['outputs'] = [receipt(p) for p in sorted(ROOT.iterdir())
+                if p.is_file() and p.name not in ['RESULT.json', 'ASSET_MANIFEST.json']]
+dump('RESULT.json', r)
+files = [receipt(p) for p in sorted(ROOT.iterdir()) if p.is_file() and p.name != 'ASSET_MANIFEST.json']
+dump('ASSET_MANIFEST.json', {'status': 'sealed', 'source_host': 'server_1', 'files': files})
+assert all(receipt(x['path'])['sha256'] == x['sha256'] for x in r['outputs'])
+print(json.dumps({'status': 'sealed', 'files': len(files), 'bytes': sum(x['bytes'] for x in files),
+                  'result_sha256': receipt(ROOT / 'RESULT.json')['sha256']}))

paper-releases/pbisc-diffusion/updates/20261015T141849Z-rare-cell-7k-8k-panels/diffusion/dataset/server_1/model8/plans/rare_gene_context_expansion_20261015/coordination/ilc_training_support/selected_dataset_support.csv

@@ -0,0 +1,13 @@
+dataset_id,cells,samples,original_donor_ids,corrected_donors
+005_A_collection_dde06e0f-ab3b-46be-96a2-a8082383c4_OneK1K_Yazar_et_al._single-cell_eQTL_mapping,350,245,245,245
+006_A_collection_ced320a1-29f3-47c1-a735-513c7084d5_AIDA_Asian_Immune_Diversity_Atlas,556,278,278,278
+009_A_Human_Immune_Health_Atlas_Human_Immune_Health_Atlas_AIFI_immune_dynamics_across_healthy_age,661,85,85,85
+010_A_collection_4a9fd4d7-d870-4265-89a5-ad51ab811d_ScaleBio_single-cell_RNA_sequencing_of_human_PBMCs,631,1,1,1
+053_B_collection_b0cf0afa-ec40-4d65-b570-ed4ceacc68_Integrated_analysis_of_multimodal_single-cell_data_CITE-seq_PBMC,85,17,6,6
+065_A_GSE271896_GSE271896_Sound_Life_deep_longitudinal_immune_profiling,4616,678,77,77
+093_C_Local_and_systemic_SARS-CoV-2_response_CELLxG_Local_and_systemic_SARS-CoV-2_response_CELLxGENE,310,52,50,50
+200_A_GSE275067_Immunobiology_of_Aging_Cohort_PBMC_Profiling,1671,177,177,177
+300b_A_GSE132802_DRESS_DiHS_PBMC_only_scRNAseq,9,3,3,2
+301_A_GSE163121_SLE_healthy_Bcell_PBMC_scRNAseq,21,3,3,3
+302_A_GSE314010_SLE_IL36_stim_PBMC_scRNAseq,44,3,3,3
+304_A_Parse_10M_PBMC_12donor_90cytokines,7485,875,10,10

paper-releases/pbisc-diffusion/updates/20261015T141849Z-rare-cell-7k-8k-panels/diffusion/dataset/server_1/model8/plans/rare_gene_context_expansion_20261015/coordination/ilc_training_support/selected_training_ilc.parquet

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:2a909d1dc14fe3775303416d913e2e909bf046058963a50b6aac5d0ac8011648
+size 555808

paper-releases/pbisc-diffusion/updates/20261015T141849Z-rare-cell-7k-8k-panels/diffusion/dataset/server_1/model8/plans/rare_gene_context_expansion_20261015/coordination/ilc_training_support/source_label_support.csv

@@ -0,0 +1,13 @@
+dataset_id,source_label,label_original,cells
+005_A_collection_dde06e0f-ab3b-46be-96a2-a8082383c4_OneK1K_Yazar_et_al._single-cell_eQTL_mapping,ILC,innate lymphoid cell,350
+006_A_collection_ced320a1-29f3-47c1-a735-513c7084d5_AIDA_Asian_Immune_Diversity_Atlas,ILC,innate lymphoid cell,556
+009_A_Human_Immune_Health_Atlas_Human_Immune_Health_Atlas_AIFI_immune_dynamics_across_healthy_age,ILC,ILC,661
+010_A_collection_4a9fd4d7-d870-4265-89a5-ad51ab811d_ScaleBio_single-cell_RNA_sequencing_of_human_PBMCs,ILC,innate lymphoid cell,631
+053_B_collection_b0cf0afa-ec40-4d65-b570-ed4ceacc68_Integrated_analysis_of_multimodal_single-cell_data_CITE-seq_PBMC,ILC,innate lymphoid cell,85
+065_A_GSE271896_GSE271896_Sound_Life_deep_longitudinal_immune_profiling,ILC,ILC,4616
+093_C_Local_and_systemic_SARS-CoV-2_response_CELLxG_Local_and_systemic_SARS-CoV-2_response_CELLxGENE,ILC,innate lymphoid cell,310
+200_A_GSE275067_Immunobiology_of_Aging_Cohort_PBMC_Profiling,ILC,ILC,1671
+300b_A_GSE132802_DRESS_DiHS_PBMC_only_scRNAseq,ILC,ILC,9
+301_A_GSE163121_SLE_healthy_Bcell_PBMC_scRNAseq,ILC,ILC,21
+302_A_GSE314010_SLE_IL36_stim_PBMC_scRNAseq,ILC,ILC,44
+304_A_Parse_10M_PBMC_12donor_90cytokines,ILC,ILC,7485