Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/cv_pooled_cibersortx/per_donor.csv

@@ -0,0 +1,25 @@
+donor,group,bp_comp_l1_final_cells,bp_comp_l1_first_cells,bp_comp_l1_final_mrna,bp_comp_l1_first_mrna,lora_comp_l1,bp_first_T cell,bp_final_T cell,obs_T cell,bp_first_B cell,bp_final_B cell,obs_B cell,bp_first_Monocyte,bp_final_Monocyte,obs_Monocyte,bp_first_NK cell,bp_final_NK cell,obs_NK cell,bp_first_DC,bp_final_DC,obs_DC,bp_first_Other,bp_final_Other,obs_Other
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/cv_pooled_cibersortx/summary.json

@@ -0,0 +1,111 @@
+{
+ "dataset": "giroux2022",
+ "comparison": "cv",
+ "draw": null,
+ "gene_mode": "cibersortx",
+ "stored_scores": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_nosex/giroux2022/pooled",
+ "lora_arm": "real_lora__raw",
+ "n_donors": 24,
+ "contrast": true,
+ "genes_scoring": 5563,
+ "genes_covered_by_Z_all_donors": 0,
+ "bayesprism": {
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+  "comp_l1_by_variant": {
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+ "observed_mean_fraction": {
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+ "lora": {
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+ "broadcast": {},
+ "other_arms": {
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+ "gates": {
+  "observed_composition_equal": true
+ },
+ "method": "cibersortx",
+ "has_cell_type_expression": false,
+ "hires_imputed_genes": {},
+ "scsemi_cv": {
+  "pooled": {
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+ "tool_sha256": "b541f68dc286497e8347d487af58ff3550a383d126eeabe347c0726e4fb28799",
+ "score_ft_sha256": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
+ "seconds": 5.0
+}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/cv_pooled_full/contrast.csv

@@ -0,0 +1,17 @@
+genes,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast
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+zero_filled,NK cell,mean_cp10k,2931,0.2190347694798697,0.554884628817489,0.024963722296947214,0.3598185091005313
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+covered,T cell,mean_cp10k,2811,0.464010614315103,0.5855239172412614,-0.2793830470292327,0.9323363337684845
+covered,T cell,pseudobulk_log1p_cpm,2811,0.5253405385715044,0.6076161925430101,-0.2557278750243797,0.9591531000178395
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+covered,B cell,pseudobulk_log1p_cpm,2952,0.1691712261796796,0.4659057935593639,0.011766387323417974,0.34210374762146534
+covered,Monocyte,mean_cp10k,2968,0.6989115000643733,0.6799841690205164,0.2954986603974299,0.8716781433750392
+covered,Monocyte,pseudobulk_log1p_cpm,2968,0.6833970406472392,0.6754480699282861,0.18887331113510167,0.9433543755386138
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+covered,NK cell,pseudobulk_log1p_cpm,2862,0.10779370914206804,0.5360381827898101,0.03797359407989504,0.1418947430849017

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/cv_pooled_full/per_donor.csv

@@ -0,0 +1,25 @@
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