Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/paired_test/draw2_test_raw_K4000.PARTS.json

@@ -0,0 +1,66 @@
+{
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+ "cells": 213000,
+ "per_row_keys": [
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+  "bulk_measurement_fraction",
+  "output_availability_mask",
+  "recipe_k",
+  "cells_per_bulk",
+  "sample_ids",
+  "donor_ids",
+  "groups",
+  "donor_n_cells",
+  "dataset_rows"
+ ],
+ "row_stride": 10000019,
+ "base_seed": 20260927,
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+ "parts": [
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+   "n_samples": 47,
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+   "file": "draw2_test_raw_K4000_part0.npz",
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+   "last_sample": "C108_1801"
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+  {
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+   "rows": [
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+   "n_samples": 48,
+   "cells": 72000,
+   "file": "draw2_test_raw_K4000_part1.npz",
+   "sha256": "a19b728ccbdab812c860fd41db1578bdc19c209867810d100637df850527bbb2",
+   "seed": 490261820,
+   "first_sample": "C108_2201",
+   "last_sample": "C146_1201"
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+  {
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+   "rows": [
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+   "n_samples": 47,
+   "cells": 70500,
+   "file": "draw2_test_raw_K4000_part2.npz",
+   "sha256": "641629b373f79e53f2ed786845f989f45b9d8b180d8674ae8a863b7f230420c5",
+   "seed": 970262732,
+   "first_sample": "C146_1401",
+   "last_sample": "C251_2905"
+  }
+ ]
+}

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/paired_test/draw3_test_raw_K4000.PARTS.json

@@ -0,0 +1,66 @@
+{
+ "source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/paired_test/draw3_test_raw_K4000.npz",
+ "source_sha256": "375f75ac1f6094649e4cf0faf32c1b72bbaa82038879715b46410d8a21556921",
+ "n_rows": 145,
+ "cells": 217500,
+ "per_row_keys": [
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+  "bulk_measurement_fraction",
+  "output_availability_mask",
+  "recipe_k",
+  "cells_per_bulk",
+  "sample_ids",
+  "donor_ids",
+  "groups",
+  "donor_n_cells",
+  "dataset_rows"
+ ],
+ "row_stride": 10000019,
+ "base_seed": 20260927,
+ "tool": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/tools/split_conditions.py",
+ "tool_sha256": "eb488d6cc6f3be5fd11f1f035361788a1affaf7ac20ebae159ce3d68ec17866a",
+ "parts": [
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+   "n_samples": 48,
+   "cells": 72000,
+   "file": "draw3_test_raw_K4000_part0.npz",
+   "sha256": "70b771185ba4ac6126b7e0664046cdd923156fd52b79a69752c5afdb93b24883",
+   "seed": 20260927,
+   "first_sample": "C20_1004",
+   "last_sample": "C123_2404"
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+  {
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+   "rows": [
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+   "n_samples": 49,
+   "cells": 73500,
+   "file": "draw3_test_raw_K4000_part1.npz",
+   "sha256": "7768bad9a89f4c0b223681bbf604a8c20444dc869e876c3fa99740bbaa88376f",
+   "seed": 500261839,
+   "first_sample": "C123_2904",
+   "last_sample": "C146_2301"
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+  {
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+   "rows": [
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+    145
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+   "n_samples": 48,
+   "cells": 72000,
+   "file": "draw3_test_raw_K4000_part2.npz",
+   "sha256": "edb9c8b961662962421c733b0d171756bab214977bbf22ef2c072ae62eff5788",
+   "seed": 990262770,
+   "first_sample": "C146_2701",
+   "last_sample": "C246_2905"
+  }
+ ]
+}

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/paired_test/draw4_test_raw_K4000.PARTS.json

@@ -0,0 +1,66 @@
+{
+ "source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/paired_test/draw4_test_raw_K4000.npz",
+ "source_sha256": "73869f7b529e5c2660089321efe2bebb373a0b0efbfcf9b78eaa3509b590d339",
+ "n_rows": 143,
+ "cells": 214500,
+ "per_row_keys": [
+  "bulk_counts",
+  "bulk_measurement_fraction",
+  "output_availability_mask",
+  "recipe_k",
+  "cells_per_bulk",
+  "sample_ids",
+  "donor_ids",
+  "groups",
+  "donor_n_cells",
+  "dataset_rows"
+ ],
+ "row_stride": 10000019,
+ "base_seed": 20260927,
+ "tool": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/tools/split_conditions.py",
+ "tool_sha256": "eb488d6cc6f3be5fd11f1f035361788a1affaf7ac20ebae159ce3d68ec17866a",
+ "parts": [
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+   "rows": [
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+   ],
+   "n_samples": 48,
+   "cells": 72000,
+   "file": "draw4_test_raw_K4000_part0.npz",
+   "sha256": "b6a7848a453bea58db127024c1ac06c93437f344494ba8a593473a804523548a",
+   "seed": 20260927,
+   "first_sample": "C20_1004",
+   "last_sample": "C108_1501"
+  },
+  {
+   "part": 1,
+   "rows": [
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+    95
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+   "n_samples": 47,
+   "cells": 70500,
+   "file": "draw4_test_raw_K4000_part1.npz",
+   "sha256": "5e2cd2cd92c1a7fb63840484b237823dc0640232d1fb529238dba741370422d7",
+   "seed": 500261839,
+   "first_sample": "C108_1801",
+   "last_sample": "C146_1201"
+  },
+  {
+   "part": 2,
+   "rows": [
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+   ],
+   "n_samples": 48,
+   "cells": 72000,
+   "file": "draw4_test_raw_K4000_part2.npz",
+   "sha256": "ccabc7a3d5f189f54bc6fd7c2a1cadac73d653421995bc9ccab2baf0c409cd01",
+   "seed": 970262732,
+   "first_sample": "C146_1401",
+   "last_sample": "C251_2905"
+  }
+ ]
+}

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/data/ye2026_sepsis/K_BUILD.json

@@ -0,0 +1,112 @@
+{
+ "dataset": "ye2026_sepsis",
+ "k": 4000,
+ "cells_per_bulk": {
+  "training": "unchanged (not used by ft_sdd.py)",
+  "paired": 1500,
+  "bulkonly": 4000
+ },
+ "written_utc": "2026-10-05T17:38:24.971003+00:00",
+ "tool": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/tools/build_k_conditions.py",
+ "tool_sha256": "ef86fa3ba086ca31ada2c85d930e216608b3199da5ff0463cc17c4471ddda92b",
+ "builder": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/realbulk_generation_20260922/build_realbulk_conditions.py",
+ "builder_sha256": "e818d69e6801b5699579db7fc450590a266708d1fc2d544743e8624c9ee6a30a",
+ "prepare_dataset_sha256": "36384262b23cf6260eff645812911c1a44f791ca8e4182765d91f2aabb3ccaef",
+ "first_plan_build_conditions_sha256": "38cb97593c9a916b0dcd8d470a8c756e65c7ccc4bee6193f688e509d2e922862",
+ "depth_anchor": 3869.603120208939,
+ "checks": {
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+  "paired_draw0_K1000_equals_test_raw": true,
+  "paired_draw1_K1000_equals_test_raw": true,
+  "paired_draw2_K1000_equals_test_raw": true,
+  "paired_draw3_K1000_equals_test_raw": true,
+  "paired_draw4_K1000_equals_test_raw": true,
+  "bulkonly_K1000_equals_bulkonly_raw": true
+ },
+ "files": {
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+   "cells_per_bulk": [
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+  "paired": {
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+  "bulkonly_meta.csv": {
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+  }
+ }
+}