junidude14 commited on
Commit
6658f62
·
verified ·
1 Parent(s): 77ea679

Publish verified PBISC dataset README.md

Browse files
Files changed (1) hide show
  1. README.md +47 -0
README.md ADDED
@@ -0,0 +1,47 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ language:
3
+ - en
4
+ size_categories:
5
+ - 10M<n<100M
6
+ tags:
7
+ - single-cell-rna-seq
8
+ - bulk-rna-seq
9
+ - diffusion
10
+ configs:
11
+ - config_name: shard_catalog
12
+ default: true
13
+ data_files:
14
+ - split: catalog
15
+ path: index/metadata/source_shards.parquet
16
+ ---
17
+ # PBISC Diffusion training data
18
+
19
+ Private archival/reproduction release for PBISC Diffusion. The catalog preview
20
+ lists shards; it is not the expression matrix or a train/test example split.
21
+ Expression remains unchanged sparse CSR Zarr (base v3, overlay v2) in transport
22
+ archives. Use the PBISC code package to verify and restore assets.
23
+
24
+ The release has 41,395,184 logical cells, 22 source datasets, 432 shards and
25
+ 20,097 ordered genes. It includes row-aligned cell metadata, measurement masks,
26
+ donor splits, sealed E2 recipes, All-K top-ups and the train-fitted conditioner.
27
+ Canonical counts are shared across model panels. Measured zero and unmeasured
28
+ coordinates remain distinct. Source assay units and sparse values are preserved.
29
+
30
+ `release.json` is the complete asset/hash manifest. `relocation.json` binds new
31
+ paths while retaining original source/index fingerprints. Original manifests
32
+ are preserved rather than rewritten. No new random split is created.
33
+
34
+ Public redistribution rights have not been established by this export.
35
+ `provenance/rights.tsv` records each study as unverified. Private archival storage
36
+ does not establish a blanket dataset license. No license is inferred from public
37
+ accessibility of an upstream download. This dataset remains private pending a
38
+ source-specific rights review.
39
+
40
+ Code: https://github.com/junidude/PBISC
41
+ Model: https://huggingface.co/junidude14/PBISC
42
+
43
+ Verify and restore pinned assets with `pbisc data download` or `pbisc data restore`.
44
+ These archives are not directly loaded as dense matrices by `load_dataset()`.
45
+ Plan approximately 112 GB for transport plus a similar amount for full extraction;
46
+ selected-shard restoration is supported. The current release is file/provenance
47
+ packaging, not a new biological validation of the source datasets.