Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw2/lora/scoring_support.json

@@ -0,0 +1,77 @@
+{
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+  "support_sha256": "fa20d986ff3869bc9b0a15ab6f16bae3a01a5f09a515f0a961146219c92595b4",
+  "cohort": "ji2025_chili",
+  "unit": "draw2_n5",
+  "test_sample_ids": [
+    "N064_TOL",
+    "N064_FU1",
+    "N038_BC",
+    "N038_AC",
+    "N055_AC",
+    "N136_TOL",
+    "N136_FU1",
+    "N138_TOL",
+    "N138_FU1",
+    "N128_BC",
+    "N128_AC",
+    "N129_BC",
+    "N129_AC",
+    "N150_BC",
+    "N158_AC",
+    "N159_BC",
+    "N001_TOL",
+    "N001_FU1",
+    "N002_TOL",
+    "N002_FU1",
+    "N012_TOL",
+    "N012_FU1",
+    "N022_TOL",
+    "N022_FU1",
+    "N043_TOL",
+    "N043_FU1"
+  ],
+  "test_donor_ids": [
+    "N064",
+    "N064",
+    "N038",
+    "N038",
+    "N055",
+    "N136",
+    "N136",
+    "N138",
+    "N138",
+    "N128",
+    "N128",
+    "N129",
+    "N129",
+    "N150",
+    "N158",
+    "N159",
+    "N001",
+    "N001",
+    "N002",
+    "N002",
+    "N012",
+    "N012",
+    "N022",
+    "N022",
+    "N043",
+    "N043"
+  ],
+  "arm_bindings": {
+    "lora": {
+      "arm": "lora",
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+      "receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ji2025_chili/disease/draw2/lora.log",
+      "receipt_sha256": "5abd988cc3e1303cb7393b78a9a0ff61f0dd481aa2d0dde0b458be9dcef41a22",
+      "source_binding": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/ji2025_chili/disease/draw2/lora/RUN.json",
+      "source_binding_sha256": "599e93e9eddd3575f9ab22d8ff2b794182502f9a2c5c18f0cb66c92daa40f99b",
+      "condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/ji2025_chili/disease/draw2/test_raw.npz",
+      "condition_sha256": "70953ef3c751fa832f2c8bf184fa1cd9fc6ef2e04329101441f0fce90b64ddc0",
+      "checkpoint_sha256": "2f29a930b31c4e7b8c02c7654fbd0d6f3c5d3b607587eab42c3fbf0709becfa9",
+      "support_sha256": "fa20d986ff3869bc9b0a15ab6f16bae3a01a5f09a515f0a961146219c92595b4"
+    }
+  }
+}

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw4/lora/receipts/score.json

@@ -0,0 +1,71 @@
+{
+  "state": "completed",
+  "stage": "score",
+  "at": "2026-10-15T11:42:13.286010+00:00",
+  "outputs": [
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+    },
+    {
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+    },
+    {
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+    },
+    {
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+    },
+    {
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+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw4/lora/score/summary.json",
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+    },
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw4/lora/scoring_support.json",
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+  ],
+  "support_sha256": "f2d01b9433a50d6169032b65106820dbc52a98c5d2341e1cb66192c345df10ec",
+  "binding": {
+    "arm": "lora",
+    "npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ji2025_chili/disease/draw4/lora.npz",
+    "npz_sha256": "371f1d2814991411c3f58dd08ef19d9b2f48303ed32ca2c0ec7b12239cf1f567",
+    "receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ji2025_chili/disease/draw4/lora.log",
+    "receipt_sha256": "d9287c078172245709f7865a546e6a0225bc6d949faaca2e2c2f18330f3b7dda",
+    "source_binding": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/ji2025_chili/disease/draw4/lora/RUN.json",
+    "source_binding_sha256": "dfb7b6645233d7836c90a710e1f33f12f67d609b0dca2007a99cacb322780e0e",
+    "condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/ji2025_chili/disease/draw4/test_raw.npz",
+    "condition_sha256": "cc4771e4a9c4ec2ada5be09852a568ab87c74b950e63a012ef3159f6a27a9bc5",
+    "checkpoint_sha256": "b3c0902776d357be1dad36ee6b92aab47f04f9a7d8587ad76ebf8a75a2e9304d",
+    "support_sha256": "f2d01b9433a50d6169032b65106820dbc52a98c5d2341e1cb66192c345df10ec"
+  },
+  "reuse": {
+    "source_summary": {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/disease_width_comparison_20261015/ji2025_chili/draw4/score/summary.json",
+      "sha256": "be6b35eb4418260a9eaa85bb8c7998bc3b4b2db79fe64d8238ab0f3ea41ccbf5",
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+    "source_arm": "lora",
+    "validated_support_sha256": "f2d01b9433a50d6169032b65106820dbc52a98c5d2341e1cb66192c345df10ec",
+    "annotation_reexecuted": false
+  }
+}

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw4/lora/score/contrast.csv

@@ -0,0 +1,14 @@
+arm,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast,n_case_donors_obs,n_control_donors_obs,n_case_donors_gen,n_control_donors_gen,n_cells_obs,n_cells_gen,deg_scored,top50_overlap,top50_jaccard,obs_top_list_size,gen_top_list_size,n_sig_obs,n_sig_gen,top50_overlap_broadcast,top50_jaccard_broadcast,broadcast_top_list_size,n_sig_broadcast
+lora,T cell,mean_cp10k,3051,0.3464364408740981,0.2205889279030323,0.3071974185919106,0.2582726720080219,14,10,14,10,38484,26157,,,,,,,,,,,
+lora,T cell,pseudobulk_log1p_cpm,3051,0.2469392245119465,0.2235497430019164,0.2132863791207901,0.1919826043463615,14,10,14,10,38484,26157,,,,,,,,,,,
+lora,B cell,mean_cp10k,3274,-0.339197782330589,0.1250583519693801,-0.3603696082305658,0.1244478197560501,14,10,14,10,5290,2451,,,,,,,,,,,
+lora,B cell,pseudobulk_log1p_cpm,3274,-0.1799755524623922,0.0317979106726547,-0.183404094651643,0.0843575504478827,14,10,14,10,5290,2451,,,,,,,,,,,
+lora,Monocyte,mean_cp10k,3154,0.3276353820988733,0.3600824414237215,0.2727260677449931,0.2207241157297518,14,10,14,10,24894,3923,,,,,,,,,,,
+lora,Monocyte,pseudobulk_log1p_cpm,3154,0.2196084159673186,0.3483113415451248,0.181692191687341,0.1468217839996729,14,10,14,10,24894,3923,,,,,,,,,,,
+lora,NK cell,mean_cp10k,3068,0.1446411034203739,0.1960867229799584,0.1214806622517802,0.1357651686321512,14,10,14,10,13678,2494,,,,,,,,,,,
+lora,NK cell,pseudobulk_log1p_cpm,3068,0.0789587735851894,0.0719120521618234,0.074751365896709,0.0632766350505918,14,10,14,10,13678,2494,,,,,,,,,,,
+lora,T cell,welch_top50_deg,5752,,,,,14,10,14,10,38484,26157,True,3.0,0.0309278350515463,50.0,50.0,296.0,98.0,0.0,0.0,2.0,2.0
+lora,B cell,welch_top50_deg,5752,,,,,14,10,14,10,5290,2451,True,1.0,0.0357142857142857,21.0,8.0,21.0,8.0,0.0,0.0,2.0,2.0
+lora,Monocyte,welch_top50_deg,5752,,,,,14,10,14,10,24894,3923,True,3.0,0.0309278350515463,50.0,50.0,238.0,51.0,0.0,0.0,2.0,2.0
+lora,NK cell,welch_top50_deg,5752,,,,,14,10,14,10,13678,2494,True,1.0,0.0285714285714285,18.0,18.0,18.0,18.0,0.0,0.0,2.0,2.0
+lora,DC,welch_top50_deg,5752,,,,,12,10,14,10,1186,475,True,0.0,0.0,50.0,0.0,216.0,0.0,0.0,0.0,2.0,2.0

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw4/lora/score/per_donor.csv

@@ -0,0 +1,25 @@
+arm,donor,group,n_generated_cells,n_observed_cells,n_reference_cells,gen_T cell,obs_T cell,gen_B cell,obs_B cell,gen_Monocyte,obs_Monocyte,gen_NK cell,obs_NK cell,gen_DC,obs_DC,gen_Other,obs_Other,comp_l1,comp_l1_obs_loo_null,pb_r,pb_own_rank,pb_top1,precision,coverage,precision_depth_matched,coverage_depth_matched,mono_pct_gen,mono_pct_obs,median_umi_gen,median_umi_obs
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+lora,N038_BC,BC,1500,2801,150,0.6426666666666667,0.5608711174580507,0.0693333333333333,0.0046411995715815,0.1433333333333333,0.1656551231702963,0.114,0.2170653338093538,0.0146666666666666,0.0342734737593716,0.016,0.0174937522313459,0.2929753659407355,0.3982170836225578,0.8769061074385608,6,False,0.9933333333333332,0.76,0.9933333333333332,0.9333333333333332,14.333333333333334,16.565512317029633,1431.0,1317.0
+lora,N038_AC,AC,1500,3976,150,0.6546666666666666,0.6830985915492958,0.0773333333333333,0.0082997987927565,0.1406666666666666,0.1290241448692153,0.096,0.1207243460764587,0.0173333333333333,0.0319416498993963,0.014,0.0269114688128772,0.1613521126760563,0.544696017292601,0.8748000453868361,3,False,1.0,0.9266666666666666,0.9866666666666668,0.9466666666666668,14.066666666666666,12.90241448692153,1352.5,910.5
+lora,N055_AC,AC,1500,4308,150,0.6866666666666666,0.340297121634169,0.104,0.0779944289693593,0.1213333333333333,0.324744661095636,0.0613333333333333,0.2051996285979573,0.0146666666666666,0.0060352831940575,0.012,0.0457288765088208,0.7620129990714948,0.2380379337775038,0.8552299645949105,11,False,0.9933333333333332,0.7333333333333333,0.9733333333333334,0.8666666666666667,12.133333333333333,32.47446610956361,1276.0,1139.5
+lora,N136_TOL,TOL,1500,759,150,0.892,0.4861660079051383,0.05,0.1001317523056653,0.03,0.1910408432147562,0.0173333333333333,0.0922266139657444,0.004,0.0013175230566534,0.0066666666666666,0.1291172595520421,0.8170329380764164,0.3772248941314246,0.8182561128898834,11,False,0.98,0.3666666666666666,0.9866666666666668,0.7933333333333333,3.0,19.104084321475625,1172.0,1837.0
+lora,N136_FU1,FU1,1500,2927,150,0.8006666666666666,0.4246668944311582,0.1006666666666666,0.147249743764947,0.0426666666666666,0.193372053296891,0.0386666666666666,0.0953194396993508,0.008,0.0023915271609156,0.0093333333333333,0.1370003416467372,0.7632164901491858,0.4066704938920718,0.8176943365684306,13,False,0.98,0.8,0.9533333333333334,0.9066666666666666,4.266666666666667,19.3372053296891,1147.5,1501.0
+lora,N138_TOL,TOL,1500,5129,150,0.822,0.1380386040163774,0.0653333333333333,0.0280756482745174,0.056,0.5878338857477091,0.0286666666666666,0.1770325599532072,0.0093333333333333,0.0060440631702086,0.0186666666666666,0.0629752388379801,1.449016702411126,0.7408047250846135,0.804038371718428,24,False,0.9733333333333334,0.7133333333333334,0.98,0.72,5.6000000000000005,58.78338857477091,986.0,1117.0
+lora,N138_FU1,FU1,1500,2107,150,0.6886666666666666,0.2728998576174656,0.078,0.0484100616990982,0.1673333333333333,0.4831514000949217,0.0326666666666666,0.1134314190792596,0.0173333333333333,0.0052206929283341,0.016,0.0768865685809207,0.914938775510204,0.5503179306259297,0.84478964934787,21,False,1.0,0.56,0.9933333333333332,0.6866666666666666,16.733333333333334,48.31514000949217,1310.0,1446.0
+lora,N128_BC,BC,1500,3902,150,0.6926666666666667,0.5158892875448488,0.086,0.0681701691440287,0.1073333333333333,0.2942080984110712,0.086,0.0784213223987698,0.018,0.0333162480779087,0.01,0.0099948744233726,0.4043820263112934,0.2621662754087492,0.8590866721344809,6,False,0.9933333333333332,0.9133333333333332,0.9866666666666668,0.9866666666666668,10.733333333333334,29.420809841107125,1082.0,1088.0
+lora,N128_AC,AC,1500,2713,150,0.6833333333333333,0.5488389237007003,0.0713333333333333,0.0652414301511242,0.1093333333333333,0.2790269074824917,0.098,0.070770364909694,0.0173333333333333,0.0294876520457058,0.0206666666666666,0.0066347217102838,0.3636957857230619,0.2841884958130783,0.864877831364432,5,False,0.9866666666666668,0.8466666666666667,0.9866666666666668,0.9933333333333332,10.933333333333334,27.90269074824917,1018.5,1181.0
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