Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scores/immicro/healthy/fold0/n5/contrast/immicro/strict/manifest.json

@@ -0,0 +1,12 @@
+{
+ "schema": "paired_ft_contrast_extra.v1",
+ "dataset": "immicro",
+ "design": "scored",
+ "unit": "strict",
+ "written_utc": "2026-10-12T12:31:34.895023+00:00",
+ "skipped": true,
+ "reason": "no case-control contrast (--no-contrast)",
+ "calls": [
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/immicro/healthy/fold0/n5/score"
+ ]
+}

paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scores/immicro/healthy/fold0/n5/extras/immicro/strict/en.csv

@@ -0,0 +1,25 @@
+dataset,design,unit,set,cellset,distance,n_samples,n_cells_real,n_cells_gen,n_pcs,lb,ub,dif_mean,en,lb_exact,lb_queries,n_representative_rows,en_reps_at_lb,seconds
+immicro,scored,strict,real_R2,pc,sq,22,3300,3300,100,174.45375563476955,234.1106868907661,195.99465128256668,0.36107951237655894,True,"[3300, 3300]",,,4.6
+immicro,scored,strict,real_R2,pc,l2,22,3300,3300,100,13.016179182007932,15.079988489859169,13.767595769315252,0.36409206240554637,True,"[3300, 3300]",,,4.6
+immicro,scored,strict,real_R2,all,sq,22,41702,41714,100,134.95212095836138,180.0197486687422,145.40543980824611,0.23194739508059198,False,"[20000, 20000]",,,12.4
+immicro,scored,strict,real_R2,all,l2,22,41702,41714,100,11.491511721422913,13.289704868175052,11.915115536763123,0.23557192179567274,False,"[20000, 20000]",,,12.4
+immicro,scored,strict,lora,pc,sq,22,3300,3300,100,174.7441535335443,225.46737858526004,246.63248750452928,1.4172666248585337,True,"[3300, 3300]",,,4.8
+immicro,scored,strict,lora,pc,l2,22,3300,3300,100,13.004413719429413,14.803085688348974,15.468322836609712,1.369849066286577,True,"[3300, 3300]",,,4.8
+immicro,scored,strict,lora,all,sq,22,83416,33000,100,133.2221496059342,170.97928344614175,190.1180873384246,1.5068923921312571,False,"[20000, 20000]",,,15.4
+immicro,scored,strict,lora,all,l2,22,83416,33000,100,11.405155330964918,12.946468183046163,13.633074864710522,1.4454687318912773,False,"[20000, 20000]",,,15.4
+immicro,scored,strict,pairedcal,pc,sq,22,3300,3300,100,181.8166022195253,218.92737025701288,293.04944366617724,2.9973198435098314,True,"[3300, 3300]",,,4.8
+immicro,scored,strict,pairedcal,pc,l2,22,3300,3300,100,13.197215248752155,14.588902500841398,16.745851052636922,2.5498802252858526,True,"[3300, 3300]",,,4.8
+immicro,scored,strict,pairedcal,all,sq,22,83416,33000,100,135.9526053893482,168.89383373209841,228.08134305982696,2.796760846677859,False,"[20000, 20000]",,,15.3
+immicro,scored,strict,pairedcal,all,l2,22,83416,33000,100,11.495378275641732,12.865613654539997,14.894836910520239,2.480930420590829,False,"[20000, 20000]",,,15.3
+immicro,scored,strict,scsemi,pc,sq,22,3300,3300,100,137.27689066267342,231.02199751833004,370.67490699760265,2.489708787620267,True,"[3300, 3300]",,,5.6
+immicro,scored,strict,scsemi,pc,l2,22,3300,3300,100,11.353184085324685,14.966120199274885,18.988316649094383,2.113276383241063,True,"[3300, 3300]",,,5.6
+immicro,scored,strict,scsemi,all,sq,22,83416,33000,100,109.8865150561636,167.2984373511355,326.1803524815723,3.7674028107634285,False,"[20000, 20000]",,,16.1
+immicro,scored,strict,scsemi,all,l2,22,83416,33000,100,10.205540461047567,12.795005779388857,17.828109697030325,2.943684621683011,False,"[20000, 20000]",,,16.1
+immicro,scored,strict,raw,pc,sq,22,3300,3300,100,219.9433829744183,192.47618280834047,436.9881765689739,-7.901962787696404,True,"[3300, 3300]",,,4.7
+immicro,scored,strict,raw,pc,l2,22,3300,3300,100,14.274760672272924,13.662263930286043,20.2144513142715,-9.697505692407091,True,"[3300, 3300]",,,4.7
+immicro,scored,strict,raw,all,sq,22,83416,33000,100,144.83429507252777,164.03683355250368,315.75265334973295,8.900821027148885,False,"[20000, 20000]",,,15.0
+immicro,scored,strict,raw,all,l2,22,83416,33000,100,11.800926087122686,12.674640051448733,17.405142500722935,6.414246129078581,False,"[20000, 20000]",,,15.0
+immicro,scored,strict,refcal,pc,sq,22,3300,3300,100,169.94402714245834,213.21157155670087,390.6771106850174,5.101585646489786,True,"[3300, 3300]",,,5.6
+immicro,scored,strict,refcal,pc,l2,22,3300,3300,100,12.73632019512054,14.384701298044371,19.425868257334518,4.058253307046731,True,"[3300, 3300]",,,5.6
+immicro,scored,strict,refcal,all,sq,22,83416,33000,100,127.41251112796166,166.40804632157253,318.1767076615128,4.8919496959438185,False,"[20000, 20000]",,,16.8
+immicro,scored,strict,refcal,all,l2,22,83416,33000,100,11.129795371493126,12.769097352250851,17.62606436707807,3.962826295483526,False,"[20000, 20000]",,,16.8

paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scores_pilot/diffusion_only/scoring_support.json

@@ -0,0 +1,54 @@
+{
+  "schema": "pbisc.paper.strict-score-binding.v1",
+  "support_sha256": "85c04462a9c768c205fc0adfcb0a40e5f94f504a93d6d822944387bc055b65d4",
+  "cohort": "immicro",
+  "unit": "fold0_n5",
+  "test_sample_ids": [
+    "HS3",
+    "HS6",
+    "HS7",
+    "HS13",
+    "HS18",
+    "HS31",
+    "HS34",
+    "HS37",
+    "HS38",
+    "HS52",
+    "HS58",
+    "HS60",
+    "HS66",
+    "HS81",
+    "HS82",
+    "HS83",
+    "HS85",
+    "HS86",
+    "HS95",
+    "HS98",
+    "HS101",
+    "HS107"
+  ],
+  "test_donor_ids": [
+    "HS3",
+    "HS6",
+    "HS7",
+    "HS13",
+    "HS18",
+    "HS31",
+    "HS34",
+    "HS37",
+    "HS38",
+    "HS52",
+    "HS58",
+    "HS60",
+    "HS66",
+    "HS81",
+    "HS82",
+    "HS83",
+    "HS85",
+    "HS86",
+    "HS95",
+    "HS98",
+    "HS101",
+    "HS107"
+  ]
+}

paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scores_pilot/diffusion_only/test_sample_ids.txt

@@ -0,0 +1,22 @@
+HS3
+HS6
+HS7
+HS13
+HS18
+HS31
+HS34
+HS37
+HS38
+HS52
+HS58
+HS60
+HS66
+HS81
+HS82
+HS83
+HS85
+HS86
+HS95
+HS98
+HS101
+HS107